Wall clock time and date at job start Mon Mar 30 2020 00:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.47394 * 2 1 4 4 C 1.36739 * 127.13710 * 90.93458 * 3 2 1 5 5 C 1.50692 * 126.34815 * 359.97438 * 4 3 2 6 6 C 1.53001 * 109.47321 * 89.99631 * 5 4 3 7 7 O 1.42907 * 109.47165 * 179.97438 * 6 5 4 8 8 N 1.30303 * 107.30427 * 180.24371 * 4 3 2 9 9 N 1.28531 * 110.04859 * 359.56193 * 8 4 3 10 10 C 1.31209 * 109.86290 * 0.44988 * 9 8 4 11 11 N 1.38588 * 126.47118 * 179.68985 * 10 9 8 12 12 C 1.46896 * 110.99962 * 306.64348 * 11 10 9 13 13 C 1.46905 * 110.99621 * 70.59854 * 11 10 9 14 14 H 1.09000 * 109.46897 * 54.99528 * 13 11 10 15 15 C 1.52998 * 109.46964 * 294.99774 * 13 11 10 16 16 C 1.50701 * 109.46897 * 174.99733 * 13 11 10 17 17 H 1.08001 * 119.99949 * 0.02562 * 16 13 11 18 18 C 1.37871 * 119.99775 * 179.97438 * 16 13 11 19 19 N 1.31512 * 120.00322 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99838 * 179.97438 * 18 16 13 21 21 H 1.48494 * 109.47244 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46617 * 120.00363 * 20 18 16 23 23 H 1.48493 * 109.47428 * 240.00168 * 20 18 16 24 24 H 1.09001 * 109.46750 * 295.55583 * 1 2 3 25 25 H 1.08996 * 109.46748 * 55.55566 * 1 2 3 26 26 H 1.08993 * 109.47047 * 175.55635 * 1 2 3 27 27 H 1.09008 * 109.46817 * 239.99505 * 2 1 3 28 28 H 1.08998 * 109.46958 * 120.00151 * 2 1 3 29 29 H 1.09000 * 109.47115 * 329.99538 * 5 4 3 30 30 H 1.08998 * 109.47271 * 209.99461 * 5 4 3 31 31 H 1.09000 * 109.47102 * 59.99899 * 6 5 4 32 32 H 1.08998 * 109.46808 * 300.00113 * 6 5 4 33 33 H 0.96692 * 114.00009 * 179.97438 * 7 6 5 34 34 H 1.08996 * 109.47486 * 54.87680 * 12 11 10 35 35 H 1.09007 * 109.46628 * 174.87654 * 12 11 10 36 36 H 1.08995 * 109.47255 * 294.86636 * 12 11 10 37 37 H 1.09004 * 109.46840 * 180.02562 * 15 13 11 38 38 H 1.09000 * 109.46983 * 300.00162 * 15 13 11 39 39 H 1.09004 * 109.47243 * 60.00335 * 15 13 11 40 40 H 0.97000 * 120.00462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3104 2.1535 1.0899 5 6 2.1893 1.7420 2.5345 6 6 3.5079 1.1213 3.0003 7 8 3.3932 0.7316 4.3704 8 7 2.7073 3.3133 0.6480 9 7 2.6947 3.3229 -0.6372 10 6 2.2767 2.1636 -1.0877 11 7 2.1253 1.8023 -2.4170 12 6 1.2886 2.7735 -3.1344 13 6 3.4309 1.6467 -3.0722 14 1 4.0370 0.9363 -2.5101 15 6 4.1429 3.0001 -3.1183 16 6 3.2308 1.1362 -4.4759 17 1 2.2335 0.9468 -4.8446 18 6 4.3208 0.9121 -5.2898 19 7 5.5352 1.1432 -4.8411 20 14 4.0728 0.2786 -7.0296 21 1 2.6217 0.1002 -7.2893 22 1 4.6317 1.2571 -7.9969 23 1 4.7680 -1.0242 -7.1859 24 1 -0.3633 0.4433 0.9271 25 1 -0.3633 0.5812 -0.8475 26 1 -0.3633 -1.0245 -0.0796 27 1 1.8934 -0.5140 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.3872 1.0113 2.6381 30 1 1.9645 2.6172 3.1440 31 1 4.3101 1.8520 2.8967 32 1 3.7328 0.2461 2.3908 33 1 4.1941 0.3290 4.7331 34 1 1.7071 3.7727 -3.0140 35 1 1.2606 2.5165 -4.1934 36 1 0.2773 2.7517 -2.7285 37 1 5.1115 2.8847 -3.6049 38 1 3.5367 3.7106 -3.6803 39 1 4.2876 3.3693 -2.1030 40 1 6.3021 0.9851 -5.4136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520757142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:51 Heat of formation + Delta-G solvation = 17.228793 kcal Electronic energy + Delta-G solvation = -21516.054365 eV Core-core repulsion = 18366.964622 eV Total energy + Delta-G solvation = -3149.089743 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.00970 -39.06637 -37.99160 -36.64469 -34.92514 -33.47985 -31.52507 -30.78684 -29.41732 -27.27483 -27.00695 -25.21334 -24.28310 -23.14991 -21.56587 -21.05750 -18.53503 -18.37491 -17.88805 -17.37842 -17.06964 -16.49650 -16.09232 -15.61165 -15.37310 -15.01809 -14.74843 -14.69066 -14.17571 -13.95385 -13.51654 -13.22315 -13.18021 -13.06510 -12.83200 -12.73263 -12.59837 -12.42117 -12.32638 -12.26730 -12.07818 -12.01730 -11.52326 -11.10214 -10.96680 -10.90178 -10.54600 -10.03032 -9.46422 -8.14951 -6.28514 0.71789 1.33702 1.44496 1.46826 1.58433 1.76748 2.41956 2.95695 3.09688 3.16227 3.63725 3.75885 3.87035 4.07423 4.13784 4.21629 4.32665 4.34431 4.42599 4.54120 4.63587 4.69793 4.76761 4.78848 4.90256 4.97077 5.00671 5.06539 5.09673 5.16853 5.21963 5.40158 5.61123 5.64089 5.83917 6.00076 6.19517 6.62391 6.81511 6.82476 7.40846 7.73530 8.92246 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.005081 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.821098 B = 5509.810180 C = 5616.087687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.462 5.462 4 C 0.179 3.821 5 C -0.021 4.021 6 C 0.089 3.911 7 O -0.579 6.579 8 N -0.327 5.327 9 N -0.348 5.348 10 C 0.357 3.643 11 N -0.464 5.464 12 C 0.051 3.949 13 C 0.235 3.765 14 H 0.000 1.000 15 C -0.155 4.155 16 C -0.516 4.516 17 H 0.072 0.928 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.968 3.032 21 H -0.260 1.260 22 H -0.284 1.284 23 H -0.281 1.281 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.403 0.597 34 H 0.026 0.974 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 -5.413 13.209 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.022 4.022 3 N -0.155 5.155 4 C -0.089 4.089 5 C -0.060 4.060 6 C 0.010 3.990 7 O -0.388 6.388 8 N -0.167 5.167 9 N -0.191 5.191 10 C -0.001 4.001 11 N -0.189 5.189 12 C -0.097 4.097 13 C 0.129 3.871 14 H 0.017 0.983 15 C -0.214 4.214 16 C -0.554 4.554 17 H 0.090 0.910 18 C -0.185 4.185 19 N -0.561 5.561 20 Si 0.793 3.207 21 H -0.184 1.184 22 H -0.210 1.210 23 H -0.207 1.207 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.254 0.746 34 H 0.045 0.955 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.599 -4.259 13.055 16.202 hybrid contribution 1.013 -0.799 -1.129 1.715 sum -7.586 -5.058 11.925 15.011 Atomic orbital electron populations 1.22052 0.92093 1.04633 1.02456 1.22168 0.97263 0.77125 1.05668 1.46662 1.48929 1.14805 1.05071 1.24976 1.02892 0.88675 0.92370 1.19858 0.99551 1.03577 0.83030 1.21864 0.95936 0.98116 0.83110 1.86346 1.43720 1.83509 1.25241 1.73873 1.19951 1.19429 1.03497 1.74613 1.20691 1.20261 1.03579 1.22839 0.99782 0.87586 0.89874 1.59308 1.18347 1.46402 0.94869 1.22222 0.95151 0.92607 0.99680 1.19060 0.82202 0.92501 0.93308 0.98256 1.22233 1.02364 0.98312 0.98528 1.21287 0.93669 1.43810 0.96662 0.91000 1.25747 0.94642 0.95512 1.02622 1.70056 0.98757 1.49263 1.38023 0.85351 0.78734 0.77621 0.78987 1.18405 1.20983 1.20740 0.91187 0.93617 0.87752 0.89317 0.86150 0.86883 0.87334 0.93835 0.93013 0.74639 0.95523 0.89454 0.91265 0.92060 0.94904 0.95358 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 10.24 71.98 0.74 -2.19 16 2 C 0.10 2.35 6.62 86.38 0.57 2.92 16 3 N -0.46 -15.20 2.81 -514.85 -1.45 -16.65 16 4 C 0.18 5.69 7.32 137.63 1.01 6.70 16 5 C -0.02 -0.44 5.78 29.85 0.17 -0.27 16 6 C 0.09 1.73 7.03 71.98 0.51 2.24 16 7 O -0.58 -9.54 13.66 -148.98 -2.04 -11.58 16 8 N -0.33 -13.27 12.18 -49.54 -0.60 -13.87 16 9 N -0.35 -15.78 9.73 -58.00 -0.56 -16.35 16 10 C 0.36 14.91 6.21 260.11 1.61 16.52 16 11 N -0.46 -20.24 4.77 -711.00 -3.39 -23.64 16 12 C 0.05 2.02 8.66 127.69 1.11 3.13 16 13 C 0.24 12.12 2.32 44.17 0.10 12.22 16 14 H 0.00 -0.03 8.11 -2.39 -0.02 -0.05 16 15 C -0.15 -8.20 8.20 71.98 0.59 -7.61 16 16 C -0.52 -27.26 7.81 25.60 0.20 -27.06 16 17 H 0.07 3.66 6.81 -2.91 -0.02 3.64 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.92 -52.65 11.32 21.44 0.24 -52.40 16 20 Si 0.97 42.10 29.54 68.60 2.03 44.13 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 28 H 0.12 2.03 7.83 -2.39 -0.02 2.01 16 29 H 0.11 1.83 7.89 -2.39 -0.02 1.82 16 30 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.40 3.10 9.12 -74.06 -0.68 2.42 16 34 H 0.03 1.12 6.53 -2.39 -0.02 1.10 16 35 H 0.09 3.50 6.30 -2.38 -0.02 3.49 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 3.53 6.07 -2.38 -0.01 3.52 16 38 H 0.03 1.67 6.59 -2.39 -0.02 1.65 16 39 H 0.03 1.48 5.95 -2.38 -0.01 1.47 16 40 H 0.26 14.24 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -70.12 325.45 1.65 -68.47 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.37 Total: 14.08 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 7.06 Total: 7.80 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -5.77 Total: -122.91 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -2.04 Total: -11.58 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -70.12 1.65 -68.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520757142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.699 kcal (2) G-P(sol) polarization free energy of solvation -70.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds