Wall clock time and date at job start Mon Mar 30 2020 00:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46494 * 109.47458 * 2 1 4 4 C 1.36740 * 127.14054 * 91.24540 * 3 2 1 5 5 C 1.50698 * 126.34222 * 0.02562 * 4 3 2 6 6 C 1.53003 * 109.47293 * 90.00036 * 5 4 3 7 7 O 1.42894 * 109.47502 * 179.97438 * 6 5 4 8 8 N 1.30294 * 107.30538 * 180.26536 * 4 3 2 9 9 N 1.28530 * 110.05444 * 359.56013 * 8 4 3 10 10 C 1.31212 * 109.86058 * 0.45373 * 9 8 4 11 11 N 1.38582 * 126.47608 * 179.72897 * 10 9 8 12 12 C 1.46899 * 110.99850 * 296.18266 * 11 10 9 13 13 C 1.46898 * 110.99691 * 60.13377 * 11 10 9 14 14 H 1.09002 * 109.47277 * 300.00588 * 13 11 10 15 15 C 1.52998 * 109.47323 * 60.00557 * 13 11 10 16 16 C 1.50705 * 109.47072 * 180.02562 * 13 11 10 17 17 H 1.08004 * 119.99711 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00120 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00044 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00034 * 179.97438 * 18 16 13 21 21 H 1.48509 * 109.46943 * 59.99885 * 20 18 16 22 22 H 1.48499 * 109.47334 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47213 * 300.00055 * 20 18 16 24 24 H 1.09002 * 109.47131 * 55.91734 * 1 2 3 25 25 H 1.08999 * 109.47567 * 175.92081 * 1 2 3 26 26 H 1.09004 * 109.46994 * 295.91750 * 1 2 3 27 27 H 1.09003 * 109.46994 * 239.99584 * 2 1 3 28 28 H 1.09004 * 109.47561 * 120.00498 * 2 1 3 29 29 H 1.08998 * 109.47508 * 330.00195 * 5 4 3 30 30 H 1.08998 * 109.46870 * 209.99616 * 5 4 3 31 31 H 1.08998 * 109.47222 * 59.99098 * 6 5 4 32 32 H 1.09004 * 109.46823 * 300.00040 * 6 5 4 33 33 H 0.96697 * 114.00294 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47225 * 65.96664 * 12 11 10 35 35 H 1.08996 * 109.47431 * 185.96895 * 12 11 10 36 36 H 1.09002 * 109.47077 * 305.97736 * 12 11 10 37 37 H 1.08996 * 109.47354 * 180.02562 * 15 13 11 38 38 H 1.08999 * 109.46646 * 299.99671 * 15 13 11 39 39 H 1.08996 * 109.47325 * 59.99760 * 15 13 11 40 40 H 0.96996 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3159 2.1516 1.0898 5 6 2.2032 1.7370 2.5342 6 6 3.5249 1.1164 2.9914 7 8 3.4182 0.7238 4.3612 8 7 2.7100 3.3122 0.6479 9 7 2.6907 3.3243 -0.6372 10 6 2.2706 2.1658 -1.0876 11 7 2.1129 1.8067 -2.4168 12 6 1.0830 2.6290 -3.0656 13 6 3.3884 1.8929 -3.1402 14 1 3.7625 2.9158 -3.0965 15 6 4.4057 0.9499 -2.4948 16 6 3.1778 1.4967 -4.5789 17 1 2.1945 1.2098 -4.9216 18 6 4.2402 1.5003 -5.4576 19 7 5.4374 1.8500 -5.0405 20 14 3.9792 1.0084 -7.2407 21 1 2.9922 1.9240 -7.8674 22 1 5.2686 1.0957 -7.9721 23 1 3.4692 -0.3850 -7.3002 24 1 -0.3633 0.5759 -0.8512 25 1 -0.3634 -1.0250 -0.0731 26 1 -0.3633 0.4492 0.9243 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.4022 1.0055 2.6409 30 1 1.9811 2.6109 3.1467 31 1 4.3259 1.8479 2.8846 32 1 3.7470 0.2425 2.3788 33 1 4.2214 0.3212 4.7186 34 1 1.4215 3.6640 -3.1138 35 1 0.9041 2.2579 -4.0747 36 1 0.1591 2.5755 -2.4896 37 1 5.3523 1.0143 -3.0313 38 1 4.5580 1.2370 -1.4543 39 1 4.0317 -0.0730 -2.5385 40 1 6.1848 1.8529 -5.6587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520757144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:54 Heat of formation + Delta-G solvation = 34.718394 kcal Electronic energy + Delta-G solvation = -21532.279018 eV Core-core repulsion = 18383.947681 eV Total energy + Delta-G solvation = -3148.331337 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.55192 -37.36079 -36.92291 -35.40707 -33.10962 -32.25314 -30.30962 -29.39934 -28.16342 -25.59986 -24.47875 -23.95998 -23.29052 -21.69623 -20.23048 -19.44475 -17.66914 -16.77267 -16.37883 -15.82940 -15.54478 -15.05905 -14.64277 -14.42788 -14.12790 -13.70466 -13.50142 -13.15304 -12.93376 -12.40176 -12.37904 -12.11156 -11.85350 -11.54119 -11.35567 -11.15931 -11.08097 -10.94005 -10.81155 -10.38794 -10.31197 -10.20877 -10.12529 -10.00508 -9.75071 -9.12543 -8.55067 -8.45859 -7.74273 -6.09958 -4.16856 2.12127 2.65895 3.27035 3.27758 3.32474 3.34356 3.96006 4.30544 4.60128 4.67299 4.72865 4.81540 5.01654 5.07232 5.21846 5.22794 5.29466 5.44987 5.59763 5.65888 5.75046 5.79096 5.97315 6.05979 6.19972 6.32662 6.47337 6.59432 6.70069 6.86025 6.91211 7.12574 7.35688 7.36922 7.62440 7.71704 7.88409 8.15029 8.42893 8.86507 9.22522 9.48135 10.97001 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.005078 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.592109 B = 5512.903781 C = 5759.049031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.108 3.892 3 N -0.466 5.466 4 C 0.153 3.847 5 C -0.022 4.022 6 C 0.081 3.919 7 O -0.574 6.574 8 N -0.285 5.285 9 N -0.320 5.320 10 C 0.387 3.613 11 N -0.473 5.473 12 C 0.052 3.948 13 C 0.225 3.775 14 H 0.021 0.979 15 C -0.130 4.130 16 C -0.512 4.512 17 H 0.066 0.934 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.383 0.617 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.092 0.908 38 H 0.000 1.000 39 H 0.031 0.969 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.810 -5.856 12.682 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.160 5.160 4 C -0.114 4.114 5 C -0.062 4.062 6 C 0.002 3.998 7 O -0.380 6.380 8 N -0.126 5.126 9 N -0.164 5.164 10 C 0.031 3.969 11 N -0.200 5.200 12 C -0.096 4.096 13 C 0.121 3.879 14 H 0.039 0.961 15 C -0.188 4.188 16 C -0.551 4.551 17 H 0.084 0.916 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.729 3.271 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.075 0.925 27 H 0.123 0.877 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.230 0.770 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.019 0.981 39 H 0.051 0.949 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.875 -4.666 12.486 14.998 hybrid contribution 0.362 -1.158 -0.989 1.565 sum -6.513 -5.825 11.497 14.440 Atomic orbital electron populations 1.22098 0.94131 1.03112 1.02830 1.21777 0.95569 0.79395 1.04756 1.46453 1.49816 1.13568 1.06211 1.24182 1.06309 0.90087 0.90868 1.19640 0.97877 1.02411 0.86230 1.22082 0.97235 0.98281 0.82175 1.86396 1.42037 1.83243 1.26304 1.73947 1.17471 1.17108 1.04051 1.74708 1.20453 1.18710 1.02494 1.22837 0.97942 0.86486 0.89656 1.59272 1.13333 1.53015 0.94392 1.22187 0.91900 0.95665 0.99832 1.19422 0.80999 0.95942 0.91578 0.96102 1.21805 1.02856 0.98187 0.95955 1.21009 0.95501 1.46268 0.92300 0.91586 1.24914 0.94996 0.95044 0.98978 1.69885 0.99904 1.47525 1.35339 0.86508 0.77397 0.79066 0.84129 1.20145 1.21264 1.20197 0.91385 0.90545 0.92468 0.87655 0.89608 0.89681 0.87917 0.92502 0.93597 0.76994 0.94595 0.89228 0.93892 0.88950 0.98057 0.94943 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 10.24 37.15 0.38 -1.37 16 2 C 0.11 1.38 6.62 -4.05 -0.03 1.35 16 3 N -0.47 -7.87 2.81 -114.09 -0.32 -8.19 16 4 C 0.15 2.53 7.32 -154.02 -1.13 1.40 16 5 C -0.02 -0.26 5.78 -27.88 -0.16 -0.42 16 6 C 0.08 0.89 7.03 37.16 0.26 1.15 16 7 O -0.57 -5.60 13.66 -35.23 -0.48 -6.08 16 8 N -0.28 -5.84 12.18 32.99 0.40 -5.44 16 9 N -0.32 -7.33 12.14 30.32 0.37 -6.96 16 10 C 0.39 8.05 5.02 -318.87 -1.60 6.45 16 11 N -0.47 -10.23 4.66 -176.08 -0.82 -11.05 16 12 C 0.05 1.02 9.14 60.06 0.55 1.57 16 13 C 0.22 5.70 2.00 -68.86 -0.14 5.56 16 14 H 0.02 0.62 8.10 -51.93 -0.42 0.20 16 15 C -0.13 -3.21 8.84 37.16 0.33 -2.88 16 16 C -0.51 -13.49 7.95 -34.44 -0.27 -13.76 16 17 H 0.07 1.68 6.39 -52.48 -0.34 1.35 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 20 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 28 H 0.09 0.86 7.81 -51.93 -0.41 0.46 16 29 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 30 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.38 2.02 9.12 45.56 0.42 2.44 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.75 6.31 -51.93 -0.33 1.42 16 36 H 0.04 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 38 H 0.00 0.01 7.22 -51.93 -0.38 -0.36 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -32.18 331.45 -7.69 -39.87 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.53 Total: 0.95 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.90 Total: 0.65 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.26 Total: -55.99 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.48 Total: -6.08 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.18 -7.69 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520757144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.584 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds