Wall clock time and date at job start Mon Mar 30 2020 00:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46494 * 109.47458 * 2 1 4 4 C 1.36740 * 127.14054 * 91.24540 * 3 2 1 5 5 C 1.50698 * 126.34222 * 0.02562 * 4 3 2 6 6 C 1.53003 * 109.47293 * 90.00036 * 5 4 3 7 7 O 1.42894 * 109.47502 * 179.97438 * 6 5 4 8 8 N 1.30294 * 107.30538 * 180.26536 * 4 3 2 9 9 N 1.28530 * 110.05444 * 359.56013 * 8 4 3 10 10 C 1.31212 * 109.86058 * 0.45373 * 9 8 4 11 11 N 1.38582 * 126.47608 * 179.72897 * 10 9 8 12 12 C 1.46899 * 110.99850 * 296.18266 * 11 10 9 13 13 C 1.46898 * 110.99691 * 60.13377 * 11 10 9 14 14 H 1.09002 * 109.47277 * 300.00588 * 13 11 10 15 15 C 1.52998 * 109.47323 * 60.00557 * 13 11 10 16 16 C 1.50705 * 109.47072 * 180.02562 * 13 11 10 17 17 H 1.08004 * 119.99711 * 0.02562 * 16 13 11 18 18 C 1.37876 * 120.00120 * 180.02562 * 16 13 11 19 19 N 1.31513 * 120.00044 * 359.97438 * 18 16 13 20 20 Si 1.86799 * 120.00034 * 179.97438 * 18 16 13 21 21 H 1.48509 * 109.46943 * 59.99885 * 20 18 16 22 22 H 1.48499 * 109.47334 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47213 * 300.00055 * 20 18 16 24 24 H 1.09002 * 109.47131 * 55.91734 * 1 2 3 25 25 H 1.08999 * 109.47567 * 175.92081 * 1 2 3 26 26 H 1.09004 * 109.46994 * 295.91750 * 1 2 3 27 27 H 1.09003 * 109.46994 * 239.99584 * 2 1 3 28 28 H 1.09004 * 109.47561 * 120.00498 * 2 1 3 29 29 H 1.08998 * 109.47508 * 330.00195 * 5 4 3 30 30 H 1.08998 * 109.46870 * 209.99616 * 5 4 3 31 31 H 1.08998 * 109.47222 * 59.99098 * 6 5 4 32 32 H 1.09004 * 109.46823 * 300.00040 * 6 5 4 33 33 H 0.96697 * 114.00294 * 179.97438 * 7 6 5 34 34 H 1.09003 * 109.47225 * 65.96664 * 12 11 10 35 35 H 1.08996 * 109.47431 * 185.96895 * 12 11 10 36 36 H 1.09002 * 109.47077 * 305.97736 * 12 11 10 37 37 H 1.08996 * 109.47354 * 180.02562 * 15 13 11 38 38 H 1.08999 * 109.46646 * 299.99671 * 15 13 11 39 39 H 1.08996 * 109.47325 * 59.99760 * 15 13 11 40 40 H 0.96996 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.3159 2.1516 1.0898 5 6 2.2032 1.7370 2.5342 6 6 3.5249 1.1164 2.9914 7 8 3.4182 0.7238 4.3612 8 7 2.7100 3.3122 0.6479 9 7 2.6907 3.3243 -0.6372 10 6 2.2706 2.1658 -1.0876 11 7 2.1129 1.8067 -2.4168 12 6 1.0830 2.6290 -3.0656 13 6 3.3884 1.8929 -3.1402 14 1 3.7625 2.9158 -3.0965 15 6 4.4057 0.9499 -2.4948 16 6 3.1778 1.4967 -4.5789 17 1 2.1945 1.2098 -4.9216 18 6 4.2402 1.5003 -5.4576 19 7 5.4374 1.8500 -5.0405 20 14 3.9792 1.0084 -7.2407 21 1 2.9922 1.9240 -7.8674 22 1 5.2686 1.0957 -7.9721 23 1 3.4692 -0.3850 -7.3002 24 1 -0.3633 0.5759 -0.8512 25 1 -0.3634 -1.0250 -0.0731 26 1 -0.3633 0.4492 0.9243 27 1 1.8932 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.4022 1.0055 2.6409 30 1 1.9811 2.6109 3.1467 31 1 4.3259 1.8479 2.8846 32 1 3.7470 0.2425 2.3788 33 1 4.2214 0.3212 4.7186 34 1 1.4215 3.6640 -3.1138 35 1 0.9041 2.2579 -4.0747 36 1 0.1591 2.5755 -2.4896 37 1 5.3523 1.0143 -3.0313 38 1 4.5580 1.2370 -1.4543 39 1 4.0317 -0.0730 -2.5385 40 1 6.1848 1.8529 -5.6587 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520757144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:53 Heat of formation + Delta-G solvation = 12.013500 kcal Electronic energy + Delta-G solvation = -21533.263576 eV Core-core repulsion = 18383.947681 eV Total energy + Delta-G solvation = -3149.315895 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.01633 -38.87697 -37.98812 -36.63053 -34.97985 -33.46817 -31.50190 -31.29287 -29.56894 -27.49493 -26.19538 -25.14199 -24.35380 -23.40916 -21.48792 -21.08997 -18.53876 -18.48385 -17.98886 -17.31892 -16.97394 -16.50519 -15.99475 -15.64073 -15.54999 -15.04377 -14.83083 -14.53225 -14.27491 -14.00862 -13.66199 -13.33306 -13.10169 -13.04477 -12.82969 -12.69466 -12.45112 -12.42420 -12.29071 -12.23788 -12.18630 -12.05172 -11.55298 -11.13077 -11.05287 -10.95544 -10.57826 -10.00232 -9.56548 -8.14882 -6.29412 0.71931 1.32649 1.46621 1.48162 1.55884 1.76482 2.41869 2.93441 3.07610 3.17284 3.64029 3.75968 3.87275 4.06877 4.12347 4.20359 4.33352 4.34768 4.41945 4.53243 4.61669 4.66971 4.73752 4.78496 4.83659 4.89745 4.90990 4.99349 5.04823 5.17014 5.22481 5.35485 5.55580 5.63278 5.88505 5.96139 6.13404 6.61115 6.80962 6.82822 7.40015 7.72915 8.92205 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.005078 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.592109 B = 5512.903781 C = 5759.049031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.459 5.459 4 C 0.180 3.820 5 C -0.021 4.021 6 C 0.089 3.911 7 O -0.579 6.579 8 N -0.326 5.326 9 N -0.364 5.364 10 C 0.367 3.633 11 N -0.463 5.463 12 C 0.055 3.945 13 C 0.234 3.766 14 H -0.031 1.031 15 C -0.110 4.110 16 C -0.523 4.523 17 H 0.075 0.925 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.969 3.031 21 H -0.269 1.269 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.045 0.955 25 H 0.105 0.895 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.403 0.597 34 H 0.014 0.986 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.067 0.933 38 H -0.001 1.001 39 H 0.043 0.957 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -8.097 13.701 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.023 4.023 3 N -0.152 5.152 4 C -0.089 4.089 5 C -0.060 4.060 6 C 0.010 3.990 7 O -0.388 6.388 8 N -0.167 5.167 9 N -0.208 5.208 10 C 0.009 3.991 11 N -0.189 5.189 12 C -0.092 4.092 13 C 0.128 3.872 14 H -0.013 1.013 15 C -0.169 4.169 16 C -0.561 4.561 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.794 3.206 21 H -0.194 1.194 22 H -0.214 1.214 23 H -0.190 1.190 24 H 0.064 0.936 25 H 0.124 0.876 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.254 0.746 34 H 0.032 0.968 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.466 -6.933 13.536 17.406 hybrid contribution 0.840 -0.470 -1.142 1.493 sum -7.627 -7.403 12.395 16.328 Atomic orbital electron populations 1.22072 0.92193 1.04709 1.02427 1.22196 0.97164 0.77065 1.05879 1.46669 1.48958 1.14694 1.04907 1.25002 1.02676 0.88747 0.92454 1.19863 0.99626 1.03548 0.82976 1.21857 0.95860 0.98120 0.83158 1.86344 1.43684 1.83444 1.25336 1.73860 1.20014 1.19588 1.03211 1.74583 1.21709 1.20518 1.03969 1.22712 0.99466 0.87078 0.89855 1.59201 1.11709 1.53135 0.94899 1.22194 0.92430 0.94155 1.00420 1.19097 0.82776 0.93007 0.92276 1.01318 1.21550 1.01516 0.98556 0.95256 1.21298 0.95917 1.46000 0.92876 0.90730 1.25780 0.94608 0.94882 1.03301 1.70042 1.00765 1.48549 1.36761 0.85435 0.77230 0.79183 0.78739 1.19445 1.21384 1.18977 0.93604 0.87629 0.91303 0.88961 0.86086 0.86745 0.87442 0.93955 0.92853 0.74624 0.96762 0.89008 0.91168 0.91476 0.98227 0.93826 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.24 71.98 0.74 -2.07 16 2 C 0.10 2.22 6.62 86.38 0.57 2.79 16 3 N -0.46 -14.89 2.81 -514.87 -1.45 -16.34 16 4 C 0.18 5.73 7.32 137.64 1.01 6.73 16 5 C -0.02 -0.44 5.78 29.85 0.17 -0.26 16 6 C 0.09 1.72 7.03 71.98 0.51 2.23 16 7 O -0.58 -9.38 13.66 -148.98 -2.03 -11.42 16 8 N -0.33 -13.56 12.18 -49.54 -0.60 -14.16 16 9 N -0.36 -17.23 12.14 -58.00 -0.70 -17.93 16 10 C 0.37 15.42 5.02 260.11 1.31 16.73 16 11 N -0.46 -20.30 4.66 -710.99 -3.31 -23.62 16 12 C 0.06 2.22 9.14 127.69 1.17 3.38 16 13 C 0.23 12.26 2.00 44.17 0.09 12.35 16 14 H -0.03 -1.91 8.10 -2.39 -0.02 -1.93 16 15 C -0.11 -5.60 8.84 71.98 0.64 -4.96 16 16 C -0.52 -27.81 7.95 25.60 0.20 -27.61 16 17 H 0.07 3.76 6.39 -2.91 -0.02 3.75 16 18 C 0.01 0.73 5.30 84.65 0.45 1.18 16 19 N -0.92 -53.19 11.32 21.45 0.24 -52.95 16 20 Si 0.97 42.19 29.54 68.60 2.03 44.22 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.12 1.90 7.81 -2.38 -0.02 1.88 16 29 H 0.11 1.81 7.88 -2.39 -0.02 1.79 16 30 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.40 2.98 9.12 -74.06 -0.68 2.31 16 34 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 35 H 0.09 3.57 6.31 -2.39 -0.02 3.56 16 36 H 0.07 2.39 8.10 -2.39 -0.02 2.37 16 37 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 38 H 0.00 -0.06 7.22 -2.39 -0.02 -0.08 16 39 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -72.31 331.45 1.37 -70.94 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.36 Total: 10.77 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.85 Total: 10.48 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -5.82 Total: -124.99 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -2.03 Total: -11.42 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -72.31 1.37 -70.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520757144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.951 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds