Wall clock time and date at job start Mon Mar 30 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99902 * 180.02562 * 8 7 6 11 11 C 1.53787 * 113.61546 * 277.49855 * 10 8 7 12 12 C 1.53783 * 87.07994 * 220.01785 * 11 10 8 13 13 C 1.52993 * 113.61662 * 270.88337 * 12 11 10 14 14 C 1.53784 * 87.08183 * 25.43505 * 12 11 10 15 15 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 16 16 C 1.36935 * 120.00239 * 275.00034 * 15 4 2 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 4 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 4 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 25 25 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 26 26 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 28 28 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 30 30 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 31 31 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 32 32 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 33 33 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 34 34 H 1.08998 * 112.85211 * 48.80559 * 10 8 7 35 35 H 1.08995 * 113.61265 * 334.56485 * 11 10 8 36 36 H 1.08993 * 113.61252 * 105.47382 * 11 10 8 37 37 H 1.09004 * 113.68528 * 139.98922 * 12 11 10 38 38 H 1.08999 * 109.47024 * 157.49810 * 13 12 11 39 39 H 1.08996 * 109.46959 * 277.49757 * 13 12 11 40 40 H 1.08999 * 109.47233 * 37.50173 * 13 12 11 41 41 H 1.09000 * 113.61433 * 220.01950 * 14 12 11 42 42 H 1.08994 * 113.62069 * 89.11231 * 14 12 11 43 43 H 0.97004 * 119.99747 * 95.00774 * 15 4 2 44 44 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1716 -1.1262 1.8272 10 6 5.8857 -2.4707 3.7456 11 6 5.9176 -1.6953 5.0732 12 6 7.2563 -2.3958 5.3595 13 6 7.1048 -3.7347 6.0841 14 6 7.4196 -2.5344 3.8366 15 7 1.5517 -2.1025 1.2491 16 6 0.3102 -2.3897 1.7504 17 1 -0.3092 -1.5980 2.1454 18 6 -0.1524 -3.6985 1.7509 19 7 0.6002 -4.6626 1.2645 20 14 -1.8463 -4.0903 2.4340 21 1 -1.7368 -4.3972 3.8828 22 1 -2.7402 -2.9201 2.2420 23 1 -2.4084 -5.2649 1.7203 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.9331 -1.1563 0.3175 32 1 3.9337 0.3018 1.3383 33 1 3.4281 -1.9369 2.9842 34 1 5.4032 -3.4453 3.8191 35 1 6.0076 -0.6164 4.9466 36 1 5.1215 -1.9767 5.7624 37 1 8.0004 -1.7465 5.8210 38 1 7.9893 -4.3463 5.9061 39 1 6.9943 -3.5583 7.1540 40 1 6.2229 -4.2534 5.7083 41 1 7.8359 -3.4932 3.5276 42 1 7.9201 -1.6850 3.3720 43 1 2.1078 -2.8135 0.8941 44 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568447732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:08 Heat of formation + Delta-G solvation = -30.815531 kcal Electronic energy + Delta-G solvation = -21295.177009 eV Core-core repulsion = 18247.544252 eV Total energy + Delta-G solvation = -3047.632758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.24240 -38.16539 -37.03706 -33.85158 -33.44768 -30.40852 -29.70947 -27.94322 -26.14892 -25.69196 -24.79989 -23.35796 -21.91207 -20.33152 -19.40689 -18.56370 -17.58352 -17.16376 -15.86855 -15.34593 -14.97603 -14.69098 -14.34882 -13.94802 -13.68263 -13.60972 -13.45184 -13.24414 -12.70686 -12.42948 -12.38777 -12.17479 -11.94167 -11.66787 -11.34194 -11.20765 -10.98766 -10.91410 -10.80648 -10.41349 -10.36401 -10.31224 -10.17333 -10.07669 -9.93068 -9.39137 -9.23032 -8.92743 -8.63655 -7.10952 -6.14492 -3.15969 2.91953 3.47614 3.51016 3.59623 3.65610 4.43388 4.52130 4.60858 4.69298 4.73410 5.22558 5.27377 5.31535 5.37410 5.47584 5.50731 5.58207 5.60024 5.65262 5.71554 5.75145 5.81484 5.83783 5.92879 5.95404 6.05214 6.12333 6.16525 6.19034 6.31242 6.37830 6.39456 6.48202 6.56571 6.63526 6.90321 7.00533 7.25595 7.76997 7.93746 8.57737 8.69476 9.14506 10.01338 10.16524 11.32624 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.005520 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.555270 B = 5071.005744 C = 6526.124034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.176 3.824 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.713 5.713 8 C 0.518 3.482 9 O -0.556 6.556 10 C -0.138 4.138 11 C -0.119 4.119 12 C -0.116 4.116 13 C -0.137 4.137 14 C -0.113 4.113 15 N -0.732 5.732 16 C -0.327 4.327 17 H 0.068 0.932 18 C -0.043 4.043 19 N -0.942 5.942 20 Si 1.078 2.922 21 H -0.296 1.296 22 H -0.295 1.295 23 H -0.289 1.289 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.367 0.633 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 6.665 6.429 12.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.206 4.206 4 C 0.065 3.935 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.363 5.363 8 C 0.305 3.695 9 O -0.435 6.435 10 C -0.159 4.159 11 C -0.157 4.157 12 C -0.134 4.134 13 C -0.194 4.194 14 C -0.150 4.150 15 N -0.375 5.375 16 C -0.457 4.457 17 H 0.086 0.914 18 C -0.241 4.241 19 N -0.588 5.588 20 Si 0.909 3.091 21 H -0.224 1.224 22 H -0.221 1.221 23 H -0.215 1.215 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.245 0.755 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.201 0.799 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.340 5.969 6.270 12.021 hybrid contribution 0.777 0.886 -0.285 1.213 sum 9.117 6.855 5.985 12.881 Atomic orbital electron populations 1.21809 0.94801 1.03945 0.98972 1.21715 0.97034 0.94462 0.99862 1.21935 1.00455 0.97269 1.00983 1.20477 0.89245 0.87677 0.96057 0.92820 1.21737 0.95611 0.94984 0.88971 1.46041 1.06874 1.52768 1.30661 1.20479 0.82347 0.80891 0.85820 1.90637 1.55695 1.49539 1.47676 1.22766 0.98735 1.00298 0.94085 1.22888 0.98085 0.99567 0.95126 1.22310 0.97675 0.97416 0.96023 1.21620 1.02108 0.95735 0.99908 1.22875 0.93810 1.03116 0.95245 1.42470 1.18304 1.02042 1.74681 1.20020 0.93649 0.95212 1.36862 0.91444 1.25691 1.05672 0.91495 1.01252 1.70853 1.11453 1.33321 1.43133 0.83252 0.74655 0.75329 0.75833 1.22410 1.22135 1.21501 0.94058 0.95007 0.89493 0.92115 0.93076 0.93492 0.93163 0.92179 0.91656 0.75476 0.86945 0.89855 0.90566 0.90435 0.92319 0.92432 0.92183 0.91157 0.88877 0.79906 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 8.26 37.16 0.31 -2.23 16 2 C -0.11 -1.89 2.69 -90.62 -0.24 -2.13 16 3 C -0.15 -2.14 8.84 37.15 0.33 -1.81 16 4 C 0.18 3.27 2.18 -67.93 -0.15 3.13 16 5 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 6 C 0.11 1.93 4.73 -4.04 -0.02 1.91 16 7 N -0.71 -11.98 5.39 -60.29 -0.32 -12.31 16 8 C 0.52 8.66 7.35 -10.99 -0.08 8.57 16 9 O -0.56 -10.95 15.90 5.55 0.09 -10.86 16 10 C -0.14 -1.82 3.80 -90.95 -0.35 -2.16 16 11 C -0.12 -1.33 7.19 -25.91 -0.19 -1.52 16 12 C -0.12 -1.16 4.55 -89.81 -0.41 -1.57 16 13 C -0.14 -1.22 9.59 37.15 0.36 -0.87 16 14 C -0.11 -1.35 7.00 -25.91 -0.18 -1.53 16 15 N -0.73 -16.54 4.44 -53.43 -0.24 -16.77 16 16 C -0.33 -8.29 7.57 -15.06 -0.11 -8.41 16 17 H 0.07 1.71 7.39 -52.48 -0.39 1.32 16 18 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 19 N -0.94 -27.70 13.70 55.49 0.76 -26.94 16 20 Si 1.08 24.83 29.92 -169.99 -5.09 19.74 16 21 H -0.30 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.09 1.89 6.01 -51.93 -0.31 1.58 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.08 6.71 -51.93 -0.35 0.73 16 33 H 0.41 6.97 8.14 -40.82 -0.33 6.64 16 34 H 0.11 1.44 7.66 -51.93 -0.40 1.04 16 35 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 41 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 42 H 0.09 1.24 7.43 -51.93 -0.39 0.85 16 43 H 0.37 8.89 6.63 -40.82 -0.27 8.62 16 44 H 0.26 7.45 6.77 -40.82 -0.28 7.17 16 LS Contribution 346.19 15.07 5.22 5.22 Total: -1.00 -29.34 346.19 -8.13 -37.47 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -7.71 Total: 14.32 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -0.83 Total: -9.87 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.20 Total: -56.01 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.34 -8.13 -37.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568447732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.656 kcal (2) G-P(sol) polarization free energy of solvation -29.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds