Wall clock time and date at job start Mon Mar 30 2020 01:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47357 * 2 1 4 4 C 1.52999 * 109.47466 * 120.00275 * 2 1 3 5 5 H 1.09005 * 109.47033 * 299.99570 * 4 2 1 6 6 C 1.52997 * 109.47264 * 179.97438 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99902 * 180.02562 * 8 7 6 11 11 C 1.53787 * 113.61546 * 277.49855 * 10 8 7 12 12 C 1.53783 * 87.07994 * 220.01785 * 11 10 8 13 13 C 1.52993 * 113.61662 * 270.88337 * 12 11 10 14 14 C 1.53784 * 87.08183 * 25.43505 * 12 11 10 15 15 N 1.46498 * 109.46890 * 59.99492 * 4 2 1 16 16 C 1.36935 * 120.00239 * 275.00034 * 15 4 2 17 17 H 1.08004 * 120.00069 * 0.02562 * 16 15 4 18 18 C 1.38811 * 120.00368 * 180.02562 * 16 15 4 19 19 N 1.31624 * 119.99540 * 359.72375 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46758 * 269.72270 * 20 18 16 22 22 H 1.48499 * 109.47026 * 29.72118 * 20 18 16 23 23 H 1.48496 * 109.47474 * 149.72153 * 20 18 16 24 24 H 1.09005 * 109.46643 * 299.99916 * 1 2 3 25 25 H 1.08994 * 109.47045 * 59.99526 * 1 2 3 26 26 H 1.08994 * 109.47364 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46643 * 240.00084 * 2 1 3 28 28 H 1.09003 * 109.47639 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47252 * 300.00191 * 3 2 1 30 30 H 1.08999 * 109.47272 * 59.99952 * 3 2 1 31 31 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 32 32 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 33 33 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 34 34 H 1.08998 * 112.85211 * 48.80559 * 10 8 7 35 35 H 1.08995 * 113.61265 * 334.56485 * 11 10 8 36 36 H 1.08993 * 113.61252 * 105.47382 * 11 10 8 37 37 H 1.09004 * 113.68528 * 139.98922 * 12 11 10 38 38 H 1.08999 * 109.47024 * 157.49810 * 13 12 11 39 39 H 1.08996 * 109.46959 * 277.49757 * 13 12 11 40 40 H 1.08999 * 109.47233 * 37.50173 * 13 12 11 41 41 H 1.09000 * 113.61433 * 220.01950 * 14 12 11 42 42 H 1.08994 * 113.62069 * 89.11231 * 14 12 11 43 43 H 0.97004 * 119.99747 * 95.00774 * 15 4 2 44 44 H 0.97000 * 120.00481 * 0.27542 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2074 2.1392 6 6 3.5701 -0.7218 1.2488 7 7 4.0584 -1.5141 2.3803 8 6 5.3834 -1.6553 2.5820 9 8 6.1716 -1.1262 1.8272 10 6 5.8857 -2.4707 3.7456 11 6 5.9176 -1.6953 5.0732 12 6 7.2563 -2.3958 5.3595 13 6 7.1048 -3.7347 6.0841 14 6 7.4196 -2.5344 3.8366 15 7 1.5517 -2.1025 1.2491 16 6 0.3102 -2.3897 1.7504 17 1 -0.3092 -1.5980 2.1454 18 6 -0.1524 -3.6985 1.7509 19 7 0.6002 -4.6626 1.2645 20 14 -1.8463 -4.0903 2.4340 21 1 -1.7368 -4.3972 3.8828 22 1 -2.7402 -2.9201 2.2420 23 1 -2.4084 -5.2649 1.7203 24 1 -0.3633 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.9331 -1.1563 0.3175 32 1 3.9337 0.3018 1.3383 33 1 3.4281 -1.9369 2.9842 34 1 5.4032 -3.4453 3.8191 35 1 6.0076 -0.6164 4.9466 36 1 5.1215 -1.9767 5.7624 37 1 8.0004 -1.7465 5.8210 38 1 7.9893 -4.3463 5.9061 39 1 6.9943 -3.5583 7.1540 40 1 6.2229 -4.2534 5.7083 41 1 7.8359 -3.4932 3.5276 42 1 7.9201 -1.6850 3.3720 43 1 2.1078 -2.8135 0.8941 44 1 1.4796 -4.4592 0.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568447732.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:08 Heat of formation + Delta-G solvation = -48.520978 kcal Electronic energy + Delta-G solvation = -21295.944775 eV Core-core repulsion = 18247.544252 eV Total energy + Delta-G solvation = -3048.400524 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43029 -39.46767 -38.45251 -35.42844 -35.15044 -32.07920 -30.78547 -29.37689 -27.50337 -26.62832 -26.10652 -25.08715 -23.36908 -21.65882 -20.82275 -19.62313 -19.34512 -18.50614 -17.26004 -16.71490 -16.50837 -16.11014 -15.63048 -15.51755 -15.34805 -14.90165 -14.60758 -14.38400 -13.88052 -13.68201 -13.56069 -13.33015 -13.18967 -12.93105 -12.84484 -12.67046 -12.50131 -12.21351 -11.93273 -11.92067 -11.91891 -11.60022 -11.51896 -11.28352 -11.21693 -11.17271 -10.87852 -10.63989 -10.06883 -9.06069 -8.27186 -5.22600 1.58933 1.61802 1.70579 1.83916 2.27339 2.74797 3.47678 3.50121 3.59443 3.69295 3.71391 3.78482 3.82083 4.13742 4.21251 4.23617 4.34972 4.52176 4.55151 4.61112 4.66676 4.72319 4.79555 4.84504 4.88733 4.92237 4.98286 5.01887 5.08009 5.09981 5.17789 5.21527 5.26037 5.34974 5.46784 5.54301 5.56131 5.68824 5.72930 6.55464 6.57745 7.14003 7.21403 8.04296 8.17398 9.23278 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.005520 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.555270 B = 5071.005744 C = 6526.124034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.140 4.140 4 C 0.179 3.821 5 H 0.054 0.946 6 C 0.121 3.879 7 N -0.712 5.712 8 C 0.515 3.485 9 O -0.589 6.589 10 C -0.142 4.142 11 C -0.114 4.114 12 C -0.101 4.101 13 C -0.136 4.136 14 C -0.115 4.115 15 N -0.739 5.739 16 C -0.303 4.303 17 H 0.071 0.929 18 C -0.103 4.103 19 N -0.980 5.980 20 Si 1.120 2.880 21 H -0.287 1.287 22 H -0.275 1.275 23 H -0.302 1.302 24 H 0.046 0.954 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.409 0.591 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.357 0.643 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.098 8.060 7.741 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 C -0.198 4.198 4 C 0.070 3.930 5 H 0.072 0.928 6 C -0.004 4.004 7 N -0.362 5.362 8 C 0.303 3.697 9 O -0.470 6.470 10 C -0.163 4.163 11 C -0.152 4.152 12 C -0.120 4.120 13 C -0.193 4.193 14 C -0.153 4.153 15 N -0.380 5.380 16 C -0.434 4.434 17 H 0.089 0.911 18 C -0.295 4.295 19 N -0.629 5.629 20 Si 0.947 3.053 21 H -0.214 1.214 22 H -0.200 1.200 23 H -0.229 1.229 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.245 0.755 34 H 0.135 0.865 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.189 0.811 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.381 7.422 7.596 13.529 hybrid contribution 0.798 0.549 -0.743 1.220 sum 9.179 7.971 6.853 13.955 Atomic orbital electron populations 1.21712 0.95301 1.01703 1.00280 1.21623 0.96500 0.96422 0.98267 1.21841 1.00831 0.94806 1.02280 1.20601 0.90023 0.85670 0.96702 0.92771 1.21606 0.94480 0.95676 0.88653 1.46072 1.07145 1.52661 1.30372 1.21110 0.81802 0.80526 0.86215 1.90616 1.56295 1.51038 1.49046 1.22894 0.99568 1.00203 0.93678 1.22899 0.99273 0.99210 0.93773 1.22269 0.97062 0.98106 0.94544 1.21636 1.02182 0.94998 1.00507 1.22883 0.92585 1.02784 0.97022 1.42584 1.17483 1.03502 1.74444 1.20231 0.94107 0.94838 1.34229 0.91134 1.26838 1.08247 0.92041 1.02347 1.70963 1.11588 1.34248 1.46117 0.82683 0.71794 0.75254 0.75531 1.21382 1.20026 1.22931 0.93531 0.92942 0.93343 0.93400 0.92428 0.91906 0.92177 0.93696 0.90250 0.75542 0.86522 0.90206 0.89527 0.89027 0.91504 0.91104 0.92925 0.90647 0.90349 0.81056 0.94656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.26 71.98 0.59 -4.08 16 2 C -0.11 -3.57 2.69 -10.80 -0.03 -3.59 16 3 C -0.14 -3.64 8.84 71.98 0.64 -3.00 16 4 C 0.18 6.53 2.18 44.99 0.10 6.63 16 5 H 0.05 2.01 8.08 -2.38 -0.02 1.99 16 6 C 0.12 4.12 4.73 86.38 0.41 4.53 16 7 N -0.71 -23.86 5.39 -463.06 -2.49 -26.36 16 8 C 0.52 17.17 7.35 87.66 0.64 17.82 16 9 O -0.59 -23.27 15.90 -3.05 -0.05 -23.32 16 10 C -0.14 -3.67 3.80 -11.01 -0.04 -3.71 16 11 C -0.11 -2.36 7.19 31.12 0.22 -2.14 16 12 C -0.10 -1.82 4.55 -10.27 -0.05 -1.87 16 13 C -0.14 -2.12 9.59 71.98 0.69 -1.43 16 14 C -0.11 -2.66 7.00 31.12 0.22 -2.44 16 15 N -0.74 -33.60 4.44 -322.94 -1.43 -35.03 16 16 C -0.30 -15.33 7.57 84.03 0.64 -14.70 16 17 H 0.07 3.50 7.39 -2.91 -0.02 3.48 16 18 C -0.10 -5.65 5.50 84.86 0.47 -5.18 16 19 N -0.98 -58.89 13.70 21.65 0.30 -58.59 16 20 Si 1.12 50.07 29.92 68.60 2.05 52.12 16 21 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 27 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.06 1.43 6.55 -2.39 -0.02 1.42 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 2.51 6.71 -2.39 -0.02 2.50 16 33 H 0.41 13.88 8.14 -92.71 -0.75 13.13 16 34 H 0.12 2.92 7.66 -2.39 -0.02 2.90 16 35 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 36 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.05 0.90 7.34 -2.39 -0.02 0.88 16 41 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 42 H 0.08 2.06 7.43 -2.39 -0.02 2.04 16 43 H 0.36 17.77 6.63 -92.71 -0.61 17.15 16 44 H 0.24 14.64 6.77 -92.71 -0.63 14.01 16 Total: -1.00 -63.28 346.19 2.62 -60.66 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -0.25 Total: 43.68 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.50 Total: -13.16 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -3.63 Total: -119.98 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.05 Total: 52.12 kcal Total: -63.28 2.62 -60.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568447732.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.139 kcal (2) G-P(sol) polarization free energy of solvation -63.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds