Wall clock time and date at job start Mon Mar 30 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 120.00141 * 2 1 4 4 H 1.08000 * 120.00110 * 203.04623 * 3 2 1 5 5 C 1.38811 * 119.99670 * 23.05195 * 3 2 1 6 6 N 1.31615 * 120.00092 * 12.92827 * 5 3 2 7 7 Si 1.86804 * 119.99874 * 192.92514 * 5 3 2 8 8 H 1.48494 * 109.46843 * 89.99836 * 7 5 3 9 9 H 1.48501 * 109.47052 * 209.99984 * 7 5 3 10 10 H 1.48506 * 109.46837 * 329.99907 * 7 5 3 11 11 C 1.46503 * 120.00055 * 180.02562 * 2 1 3 12 12 C 1.52989 * 109.47383 * 89.99433 * 11 2 1 13 13 C 1.53002 * 109.47253 * 180.02562 * 12 11 2 14 14 N 1.46498 * 109.47447 * 180.02562 * 13 12 11 15 15 C 1.46503 * 120.00085 * 270.00281 * 14 13 12 16 16 C 1.34774 * 120.00099 * 90.00016 * 14 13 12 17 17 O 1.21279 * 120.00215 * 0.02562 * 16 14 13 18 18 C 1.50699 * 119.99991 * 180.02562 * 16 14 13 19 19 H 1.08998 * 115.56428 * 325.70233 * 18 16 14 20 20 C 1.53003 * 117.49680 * 111.39244 * 18 16 14 21 21 C 1.53002 * 60.03313 * 107.50368 * 20 18 16 22 22 C 1.52994 * 117.50199 * 107.47990 * 21 20 18 23 23 C 1.53002 * 117.49312 * 252.47733 * 21 20 18 24 24 H 1.09000 * 109.46724 * 275.11986 * 1 2 3 25 25 H 1.09000 * 109.46962 * 35.12075 * 1 2 3 26 26 H 1.08997 * 109.47197 * 155.12142 * 1 2 3 27 27 H 0.97004 * 120.00201 * 180.02562 * 6 5 3 28 28 H 1.09007 * 109.46559 * 329.99209 * 11 2 1 29 29 H 1.09001 * 109.47265 * 210.00027 * 11 2 1 30 30 H 1.09007 * 109.47456 * 60.00325 * 12 11 2 31 31 H 1.08999 * 109.47604 * 300.00001 * 12 11 2 32 32 H 1.08998 * 109.46884 * 60.00344 * 13 12 11 33 33 H 1.09001 * 109.47312 * 300.00543 * 13 12 11 34 34 H 1.08998 * 109.47069 * 270.00058 * 15 14 13 35 35 H 1.09006 * 109.47078 * 29.99733 * 15 14 13 36 36 H 1.08996 * 109.47384 * 149.99643 * 15 14 13 37 37 H 1.08996 * 117.50026 * 359.97438 * 20 18 16 38 38 H 1.09002 * 117.50019 * 214.99865 * 20 18 16 39 39 H 1.09000 * 109.47181 * 111.39191 * 22 21 20 40 40 H 1.09002 * 109.47311 * 231.39103 * 22 21 20 41 41 H 1.08996 * 109.47319 * 351.38864 * 22 21 20 42 42 H 1.08998 * 109.47560 * 8.60853 * 23 21 20 43 43 H 1.09003 * 109.47223 * 128.60801 * 23 21 20 44 44 H 1.09000 * 109.47165 * 248.60237 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5387 2.3400 0.4707 6 7 0.4119 2.2596 1.1460 7 14 2.3160 4.0073 0.1458 8 1 1.7988 4.5534 -1.1346 9 1 1.9760 4.9363 1.2534 10 1 3.7910 3.8577 0.0604 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 6 3.2169 -3.0352 -1.4437 14 7 3.4615 -3.4574 -2.8250 15 6 2.4848 -4.3023 -3.5167 16 6 4.5851 -3.0684 -3.4596 17 8 5.3939 -2.3693 -2.8870 18 6 4.8364 -3.5022 -4.8808 19 1 4.4720 -4.4960 -5.1406 20 6 4.7882 -2.4257 -5.9670 21 6 6.1306 -3.0276 -5.5466 22 6 6.8133 -3.9847 -6.5258 23 6 7.0706 -2.1488 -4.7190 24 1 -0.3633 0.0917 1.0236 25 1 -0.3633 0.8406 -0.5912 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0152 3.0661 1.4747 28 1 1.6084 -2.0286 0.5131 29 1 3.1499 -1.1387 0.5133 30 1 3.0415 -0.9500 -1.9568 31 1 1.5000 -1.8400 -1.9570 32 1 2.6274 -3.7948 -0.9303 33 1 4.1693 -2.9056 -0.9297 34 1 2.7264 -5.3514 -3.3460 35 1 1.4864 -4.0923 -3.1329 36 1 2.5147 -4.0919 -4.5857 37 1 4.5743 -1.4038 -5.6537 38 1 4.3917 -2.7112 -6.9413 39 1 7.7161 -3.5182 -6.9200 40 1 7.0772 -4.9069 -6.0081 41 1 6.1330 -4.2108 -7.3468 42 1 6.5496 -1.2387 -4.4218 43 1 7.3875 -2.6930 -3.8293 44 1 7.9446 -1.8886 -5.3162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570195528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:58 Heat of formation + Delta-G solvation = 6.695695 kcal Electronic energy + Delta-G solvation = -21024.634577 eV Core-core repulsion = 17978.628428 eV Total energy + Delta-G solvation = -3046.006149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32716 -37.64503 -36.02841 -35.21211 -32.31473 -30.35782 -29.40650 -27.54086 -26.91715 -25.99811 -25.59169 -23.56048 -21.82947 -20.18270 -19.71060 -18.51281 -17.22848 -16.57687 -15.82205 -15.35283 -14.78366 -14.62625 -14.23731 -13.91620 -13.76126 -13.35976 -13.23958 -12.87576 -12.80309 -12.66586 -12.53349 -12.40300 -11.99559 -11.85563 -11.67703 -11.31983 -11.22320 -10.87935 -10.76857 -10.65775 -10.38537 -10.31062 -10.09881 -9.91338 -9.79755 -9.67739 -9.35962 -8.59615 -8.40389 -6.64550 -5.64166 -3.10525 2.57621 3.04631 3.44296 3.50084 3.52730 3.66888 4.39502 4.51857 4.57950 4.65185 4.91938 4.95539 5.08094 5.27712 5.33002 5.44297 5.47858 5.48982 5.55126 5.55973 5.60944 5.76386 5.80100 5.85683 5.90371 5.98725 6.09482 6.11459 6.15375 6.24306 6.50492 6.53273 6.72745 6.79965 6.91147 7.10208 7.43830 7.49645 7.78741 7.89900 8.33546 8.49029 9.32931 9.96494 10.45321 11.40710 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004222 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.039032 B = 6630.968442 C = 7479.414034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.604 5.604 3 C -0.251 4.251 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.117 3.883 14 N -0.613 5.613 15 C 0.080 3.920 16 C 0.539 3.461 17 O -0.529 6.529 18 C -0.187 4.187 19 H 0.119 0.881 20 C -0.147 4.147 21 C -0.096 4.096 22 C -0.115 4.115 23 C -0.104 4.104 24 H 0.030 0.970 25 H 0.038 0.962 26 H -0.004 1.004 27 H 0.251 0.749 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 -16.066 -14.334 22.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.326 5.326 3 C -0.380 4.380 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.027 3.973 12 C -0.191 4.191 13 C -0.006 4.006 14 N -0.347 5.347 15 C -0.063 4.063 16 C 0.327 3.673 17 O -0.405 6.405 18 C -0.209 4.209 19 H 0.137 0.863 20 C -0.185 4.185 21 C -0.096 4.096 22 C -0.172 4.172 23 C -0.161 4.161 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.123 -15.553 -13.911 22.049 hybrid contribution -0.032 0.819 -0.215 0.847 sum 7.090 -14.735 -14.126 21.608 Atomic orbital electron populations 1.20766 0.82802 0.95163 0.99350 1.43885 1.01778 1.00773 1.86186 1.19229 0.98248 0.85666 1.34894 0.91450 1.25007 0.97967 0.98479 0.98336 1.70072 1.19572 1.27027 1.38928 0.86264 0.78896 0.84204 0.77314 1.21585 1.21757 1.20418 1.20628 0.96042 0.88297 0.92286 1.22589 0.99170 0.95420 1.01874 1.21575 1.01282 0.96903 0.80800 1.47885 1.20493 1.51381 1.14897 1.21757 0.92980 0.93919 0.97692 1.19659 0.80959 0.79722 0.86927 1.90719 1.45112 1.37213 1.67467 1.22396 1.05539 1.00667 0.92259 0.86291 1.23218 1.00227 0.97762 0.97264 1.21595 0.88890 0.99972 0.99176 1.21385 1.00330 0.98174 0.97320 1.21359 0.97116 0.99268 0.98318 0.95137 0.94273 0.98593 0.93878 0.94792 0.93455 0.91866 0.93029 0.91083 0.90088 0.92959 0.90856 0.91162 0.88102 0.88022 0.91674 0.92113 0.92410 0.91457 0.91435 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.19 8.98 59.85 0.54 4.73 16 2 N -0.60 -15.97 2.92 -181.12 -0.53 -16.49 16 3 C -0.25 -7.28 9.65 -15.06 -0.15 -7.42 16 4 H 0.07 1.95 7.86 -52.49 -0.41 1.54 16 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -27.51 10.71 55.49 0.59 -26.92 16 7 Si 0.90 22.84 29.57 -169.99 -5.03 17.82 16 8 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 9 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.16 3.34 5.64 -4.05 -0.02 3.31 16 12 C -0.15 -2.78 5.86 -26.74 -0.16 -2.93 16 13 C 0.12 1.76 5.41 -4.04 -0.02 1.73 16 14 N -0.61 -8.26 2.87 -181.57 -0.52 -8.78 16 15 C 0.08 0.75 10.01 59.85 0.60 1.35 16 16 C 0.54 7.94 7.44 -10.99 -0.08 7.86 16 17 O -0.53 -9.70 12.69 5.56 0.07 -9.62 16 18 C -0.19 -2.06 4.52 -91.73 -0.41 -2.48 16 19 H 0.12 1.03 7.26 -51.93 -0.38 0.65 16 20 C -0.15 -1.51 9.52 -26.73 -0.25 -1.76 16 21 C -0.10 -1.01 2.70 -154.47 -0.42 -1.43 16 22 C -0.12 -0.90 9.85 37.15 0.37 -0.53 16 23 C -0.10 -1.30 8.09 37.16 0.30 -1.00 16 24 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 25 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 26 H 0.00 -0.10 8.03 -51.93 -0.42 -0.52 16 27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 30 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.08 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 36 H 0.07 0.56 6.64 -51.93 -0.34 0.22 16 37 H 0.10 1.21 8.05 -51.93 -0.42 0.79 16 38 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 39 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 42 H 0.07 0.99 7.02 -51.93 -0.36 0.63 16 43 H 0.07 0.94 7.26 -51.93 -0.38 0.56 16 44 H 0.05 0.50 7.92 -51.93 -0.41 0.09 16 LS Contribution 352.03 15.07 5.31 5.31 Total: -1.00 -33.26 352.03 -7.92 -41.18 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -8.01 Total: -3.82 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 0.20 Total: 1.34 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.46 Total: -52.20 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.26 -7.92 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570195528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.873 kcal (2) G-P(sol) polarization free energy of solvation -33.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds