Wall clock time and date at job start Mon Mar 30 2020 01:38:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36940 * 120.00141 * 2 1
4 4 H 1.08000 * 120.00110 * 203.04623 * 3 2 1
5 5 C 1.38811 * 119.99670 * 23.05195 * 3 2 1
6 6 N 1.31615 * 120.00092 * 12.92827 * 5 3 2
7 7 Si 1.86804 * 119.99874 * 192.92514 * 5 3 2
8 8 H 1.48494 * 109.46843 * 89.99836 * 7 5 3
9 9 H 1.48501 * 109.47052 * 209.99984 * 7 5 3
10 10 H 1.48506 * 109.46837 * 329.99907 * 7 5 3
11 11 C 1.46503 * 120.00055 * 180.02562 * 2 1 3
12 12 C 1.52989 * 109.47383 * 89.99433 * 11 2 1
13 13 C 1.53002 * 109.47253 * 180.02562 * 12 11 2
14 14 N 1.46498 * 109.47447 * 180.02562 * 13 12 11
15 15 C 1.46503 * 120.00085 * 270.00281 * 14 13 12
16 16 C 1.34774 * 120.00099 * 90.00016 * 14 13 12
17 17 O 1.21279 * 120.00215 * 0.02562 * 16 14 13
18 18 C 1.50699 * 119.99991 * 180.02562 * 16 14 13
19 19 H 1.08998 * 115.56428 * 325.70233 * 18 16 14
20 20 C 1.53003 * 117.49680 * 111.39244 * 18 16 14
21 21 C 1.53002 * 60.03313 * 107.50368 * 20 18 16
22 22 C 1.52994 * 117.50199 * 107.47990 * 21 20 18
23 23 C 1.53002 * 117.49312 * 252.47733 * 21 20 18
24 24 H 1.09000 * 109.46724 * 275.11986 * 1 2 3
25 25 H 1.09000 * 109.46962 * 35.12075 * 1 2 3
26 26 H 1.08997 * 109.47197 * 155.12142 * 1 2 3
27 27 H 0.97004 * 120.00201 * 180.02562 * 6 5 3
28 28 H 1.09007 * 109.46559 * 329.99209 * 11 2 1
29 29 H 1.09001 * 109.47265 * 210.00027 * 11 2 1
30 30 H 1.09007 * 109.47456 * 60.00325 * 12 11 2
31 31 H 1.08999 * 109.47604 * 300.00001 * 12 11 2
32 32 H 1.08998 * 109.46884 * 60.00344 * 13 12 11
33 33 H 1.09001 * 109.47312 * 300.00543 * 13 12 11
34 34 H 1.08998 * 109.47069 * 270.00058 * 15 14 13
35 35 H 1.09006 * 109.47078 * 29.99733 * 15 14 13
36 36 H 1.08996 * 109.47384 * 149.99643 * 15 14 13
37 37 H 1.08996 * 117.50026 * 359.97438 * 20 18 16
38 38 H 1.09002 * 117.50019 * 214.99865 * 20 18 16
39 39 H 1.09000 * 109.47181 * 111.39191 * 22 21 20
40 40 H 1.09002 * 109.47311 * 231.39103 * 22 21 20
41 41 H 1.08996 * 109.47319 * 351.38864 * 22 21 20
42 42 H 1.08998 * 109.47560 * 8.60853 * 23 21 20
43 43 H 1.09003 * 109.47223 * 128.60801 * 23 21 20
44 44 H 1.09000 * 109.47165 * 248.60237 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.1651 1.2232 -0.3661
5 6 1.5387 2.3400 0.4707
6 7 0.4119 2.2596 1.1460
7 14 2.3160 4.0073 0.1458
8 1 1.7988 4.5534 -1.1346
9 1 1.9760 4.9363 1.2534
10 1 3.7910 3.8577 0.0604
11 6 2.1975 -1.2687 -0.0006
12 6 2.4524 -1.7099 -1.4431
13 6 3.2169 -3.0352 -1.4437
14 7 3.4615 -3.4574 -2.8250
15 6 2.4848 -4.3023 -3.5167
16 6 4.5851 -3.0684 -3.4596
17 8 5.3939 -2.3693 -2.8870
18 6 4.8364 -3.5022 -4.8808
19 1 4.4720 -4.4960 -5.1406
20 6 4.7882 -2.4257 -5.9670
21 6 6.1306 -3.0276 -5.5466
22 6 6.8133 -3.9847 -6.5258
23 6 7.0706 -2.1488 -4.7190
24 1 -0.3633 0.0917 1.0236
25 1 -0.3633 0.8406 -0.5912
26 1 -0.3633 -0.9323 -0.4323
27 1 -0.0152 3.0661 1.4747
28 1 1.6084 -2.0286 0.5131
29 1 3.1499 -1.1387 0.5133
30 1 3.0415 -0.9500 -1.9568
31 1 1.5000 -1.8400 -1.9570
32 1 2.6274 -3.7948 -0.9303
33 1 4.1693 -2.9056 -0.9297
34 1 2.7264 -5.3514 -3.3460
35 1 1.4864 -4.0923 -3.1329
36 1 2.5147 -4.0919 -4.5857
37 1 4.5743 -1.4038 -5.6537
38 1 4.3917 -2.7112 -6.9413
39 1 7.7161 -3.5182 -6.9200
40 1 7.0772 -4.9069 -6.0081
41 1 6.1330 -4.2108 -7.3468
42 1 6.5496 -1.2387 -4.4218
43 1 7.3875 -2.6930 -3.8293
44 1 7.9446 -1.8886 -5.3162
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001570195528.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:38:58
Heat of formation + Delta-G solvation = -12.920070 kcal
Electronic energy + Delta-G solvation = -21025.485181 eV
Core-core repulsion = 17978.628428 eV
Total energy + Delta-G solvation = -3046.856752 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.36610 -38.67110 -37.72741 -36.59150 -34.12351 -32.12236 -30.34364 -28.36925
-28.11793 -27.84595 -27.06733 -24.93709 -23.25935 -21.98870 -20.65333 -19.48562
-18.79030 -18.18070 -17.16145 -16.67502 -16.38542 -15.93029 -15.52575 -15.29923
-14.91742 -14.63388 -14.54456 -14.46217 -14.07995 -13.78157 -13.53611 -13.35679
-13.25161 -12.97348 -12.85338 -12.74192 -12.68378 -12.57028 -12.50073 -12.27680
-12.12738 -12.11348 -11.90231 -11.45340 -11.16254 -10.80512 -10.69563 -10.42599
-9.64568 -8.78113 -7.86527 -5.35886 1.41133 1.41957 1.51161 1.52035
2.03618 2.47383 2.80163 3.25179 3.51152 3.67854 3.70174 3.84611
4.00404 4.14597 4.19795 4.31508 4.37876 4.51441 4.58027 4.67978
4.72830 4.74390 4.81512 4.82452 4.84263 4.91247 4.94882 4.97276
5.05730 5.08972 5.11584 5.23378 5.25667 5.31428 5.47626 5.52619
5.58456 5.63267 5.68219 6.30109 6.45441 7.12662 7.24349 7.85429
8.27144 9.15820
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.021599 B = 0.004222 C = 0.003743
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1296.039032 B = 6630.968442 C = 7479.414034
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.177 3.823
2 N -0.623 5.623
3 C -0.265 4.265
4 H 0.057 0.943
5 C -0.050 4.050
6 N -0.936 5.936
7 Si 0.965 3.035
8 H -0.284 1.284
9 H -0.287 1.287
10 H -0.275 1.275
11 C 0.153 3.847
12 C -0.127 4.127
13 C 0.125 3.875
14 N -0.615 5.615
15 C 0.073 3.927
16 C 0.525 3.475
17 O -0.579 6.579
18 C -0.186 4.186
19 H 0.154 0.846
20 C -0.141 4.141
21 C -0.101 4.101
22 C -0.109 4.109
23 C -0.100 4.100
24 H 0.007 0.993
25 H 0.011 0.989
26 H 0.035 0.965
27 H 0.250 0.750
28 H 0.061 0.939
29 H 0.033 0.967
30 H 0.021 0.979
31 H 0.058 0.942
32 H 0.105 0.895
33 H 0.060 0.940
34 H 0.078 0.922
35 H 0.078 0.922
36 H 0.087 0.913
37 H 0.073 0.927
38 H 0.136 0.864
39 H 0.069 0.931
40 H 0.065 0.935
41 H 0.078 0.922
42 H 0.033 0.967
43 H 0.046 0.954
44 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.565 -18.254 -16.399 25.402
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 N -0.346 5.346
3 C -0.396 4.396
4 H 0.075 0.925
5 C -0.245 4.245
6 N -0.583 5.583
7 Si 0.794 3.206
8 H -0.211 1.211
9 H -0.213 1.213
10 H -0.200 1.200
11 C 0.026 3.974
12 C -0.168 4.168
13 C 0.002 3.998
14 N -0.347 5.347
15 C -0.069 4.069
16 C 0.315 3.685
17 O -0.459 6.459
18 C -0.207 4.207
19 H 0.171 0.829
20 C -0.178 4.178
21 C -0.102 4.102
22 C -0.166 4.166
23 C -0.157 4.157
24 H 0.025 0.975
25 H 0.030 0.970
26 H 0.054 0.946
27 H 0.059 0.941
28 H 0.080 0.920
29 H 0.051 0.949
30 H 0.040 0.960
31 H 0.077 0.923
32 H 0.124 0.876
33 H 0.078 0.922
34 H 0.096 0.904
35 H 0.097 0.903
36 H 0.105 0.895
37 H 0.092 0.908
38 H 0.154 0.846
39 H 0.088 0.912
40 H 0.084 0.916
41 H 0.097 0.903
42 H 0.052 0.948
43 H 0.065 0.935
44 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 6.861 -17.794 -16.002 24.895
hybrid contribution 0.053 1.465 0.452 1.534
sum 6.914 -16.329 -15.550 23.585
Atomic orbital electron populations
1.20541 0.82483 0.95993 0.97728 1.44155 1.02330 1.01694 1.86449
1.19415 0.98151 0.87304 1.34703 0.92527 1.25740 0.98681 1.01694
0.98414 1.70214 1.20659 1.27664 1.39745 0.85294 0.78184 0.79999
0.77172 1.21082 1.21333 1.19975 1.20798 0.95309 0.87099 0.94160
1.22258 0.99173 0.96214 0.99160 1.21357 1.00156 0.95875 0.82436
1.48006 1.21004 1.51347 1.14326 1.22061 0.92023 0.94488 0.98301
1.20459 0.80697 0.78979 0.88385 1.90703 1.46889 1.39434 1.68867
1.22456 1.06163 1.02232 0.89822 0.82881 1.23269 0.99983 0.96251
0.98297 1.21710 0.88697 1.00328 0.99443 1.21382 1.00722 0.97419
0.97029 1.21254 0.98086 0.98105 0.98283 0.97467 0.96967 0.94624
0.94096 0.92032 0.94867 0.96044 0.92340 0.87640 0.92187 0.90362
0.90314 0.89485 0.90842 0.84608 0.91180 0.91587 0.90284 0.94792
0.93530 0.91651
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.09 8.98 127.77 1.15 10.24 16
2 N -0.62 -33.34 2.92 -726.95 -2.12 -35.46 16
3 C -0.27 -15.78 9.65 84.03 0.81 -14.97 16
4 H 0.06 3.41 7.86 -2.91 -0.02 3.39 16
5 C -0.05 -2.97 5.10 84.86 0.43 -2.54 16
6 N -0.94 -57.53 10.71 21.65 0.23 -57.30 16
7 Si 0.97 47.79 29.57 68.60 2.03 49.82 16
8 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16
9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16
10 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16
11 C 0.15 6.55 5.64 86.37 0.49 7.03 16
12 C -0.13 -4.71 5.86 30.59 0.18 -4.54 16
13 C 0.13 3.65 5.41 86.38 0.47 4.11 16
14 N -0.62 -15.63 2.87 -846.76 -2.43 -18.06 16
15 C 0.07 1.10 10.01 127.77 1.28 2.38 16
16 C 0.53 15.34 7.44 87.66 0.65 15.99 16
17 O -0.58 -22.36 12.69 -3.03 -0.04 -22.40 16
18 C -0.19 -3.70 4.52 -11.51 -0.05 -3.76 16
19 H 0.15 1.98 7.26 -2.39 -0.02 1.96 16
20 C -0.14 -2.63 9.52 30.60 0.29 -2.34 16
21 C -0.10 -1.99 2.70 -52.16 -0.14 -2.13 16
22 C -0.11 -1.35 9.85 71.98 0.71 -0.64 16
23 C -0.10 -2.59 8.09 71.98 0.58 -2.01 16
24 H 0.01 0.39 7.34 -2.39 -0.02 0.38 16
25 H 0.01 0.65 7.34 -2.39 -0.02 0.63 16
26 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16
27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16
28 H 0.06 2.30 8.07 -2.38 -0.02 2.28 16
29 H 0.03 1.49 8.04 -2.39 -0.02 1.47 16
30 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16
31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16
32 H 0.11 2.37 8.07 -2.39 -0.02 2.35 16
33 H 0.06 2.02 7.42 -2.39 -0.02 2.00 16
34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16
35 H 0.08 1.14 8.07 -2.38 -0.02 1.12 16
36 H 0.09 1.04 6.64 -2.39 -0.02 1.03 16
37 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16
38 H 0.14 1.60 8.05 -2.39 -0.02 1.58 16
39 H 0.07 0.81 7.92 -2.39 -0.02 0.79 16
40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
41 H 0.08 0.67 7.90 -2.39 -0.02 0.65 16
42 H 0.03 1.07 7.02 -2.39 -0.02 1.06 16
43 H 0.05 1.37 7.26 -2.39 -0.02 1.35 16
44 H 0.06 1.38 7.92 -2.39 -0.02 1.36 16
Total: -1.00 -75.67 352.03 5.45 -70.22
By element:
Atomic # 1 Polarization: 5.42 SS G_CDS: 0.94 Total: 6.36 kcal
Atomic # 6 Polarization: -0.01 SS G_CDS: 6.85 Total: 6.83 kcal
Atomic # 7 Polarization: -106.50 SS G_CDS: -4.33 Total: -110.82 kcal
Atomic # 8 Polarization: -22.36 SS G_CDS: -0.04 Total: -22.40 kcal
Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal
Total: -75.67 5.45 -70.22 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001570195528.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal
(2) G-P(sol) polarization free energy of solvation -75.666 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.369 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.217 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds