Wall clock time and date at job start Mon Mar 30 2020 01:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36940 * 120.00141 * 2 1 4 4 H 1.08000 * 120.00110 * 203.04623 * 3 2 1 5 5 C 1.38811 * 119.99670 * 23.05195 * 3 2 1 6 6 N 1.31615 * 120.00092 * 12.92827 * 5 3 2 7 7 Si 1.86804 * 119.99874 * 192.92514 * 5 3 2 8 8 H 1.48494 * 109.46843 * 89.99836 * 7 5 3 9 9 H 1.48501 * 109.47052 * 209.99984 * 7 5 3 10 10 H 1.48506 * 109.46837 * 329.99907 * 7 5 3 11 11 C 1.46503 * 120.00055 * 180.02562 * 2 1 3 12 12 C 1.52989 * 109.47383 * 89.99433 * 11 2 1 13 13 C 1.53002 * 109.47253 * 180.02562 * 12 11 2 14 14 N 1.46498 * 109.47447 * 180.02562 * 13 12 11 15 15 C 1.46503 * 120.00085 * 270.00281 * 14 13 12 16 16 C 1.34774 * 120.00099 * 90.00016 * 14 13 12 17 17 O 1.21279 * 120.00215 * 0.02562 * 16 14 13 18 18 C 1.50699 * 119.99991 * 180.02562 * 16 14 13 19 19 H 1.08998 * 115.56428 * 325.70233 * 18 16 14 20 20 C 1.53003 * 117.49680 * 111.39244 * 18 16 14 21 21 C 1.53002 * 60.03313 * 107.50368 * 20 18 16 22 22 C 1.52994 * 117.50199 * 107.47990 * 21 20 18 23 23 C 1.53002 * 117.49312 * 252.47733 * 21 20 18 24 24 H 1.09000 * 109.46724 * 275.11986 * 1 2 3 25 25 H 1.09000 * 109.46962 * 35.12075 * 1 2 3 26 26 H 1.08997 * 109.47197 * 155.12142 * 1 2 3 27 27 H 0.97004 * 120.00201 * 180.02562 * 6 5 3 28 28 H 1.09007 * 109.46559 * 329.99209 * 11 2 1 29 29 H 1.09001 * 109.47265 * 210.00027 * 11 2 1 30 30 H 1.09007 * 109.47456 * 60.00325 * 12 11 2 31 31 H 1.08999 * 109.47604 * 300.00001 * 12 11 2 32 32 H 1.08998 * 109.46884 * 60.00344 * 13 12 11 33 33 H 1.09001 * 109.47312 * 300.00543 * 13 12 11 34 34 H 1.08998 * 109.47069 * 270.00058 * 15 14 13 35 35 H 1.09006 * 109.47078 * 29.99733 * 15 14 13 36 36 H 1.08996 * 109.47384 * 149.99643 * 15 14 13 37 37 H 1.08996 * 117.50026 * 359.97438 * 20 18 16 38 38 H 1.09002 * 117.50019 * 214.99865 * 20 18 16 39 39 H 1.09000 * 109.47181 * 111.39191 * 22 21 20 40 40 H 1.09002 * 109.47311 * 231.39103 * 22 21 20 41 41 H 1.08996 * 109.47319 * 351.38864 * 22 21 20 42 42 H 1.08998 * 109.47560 * 8.60853 * 23 21 20 43 43 H 1.09003 * 109.47223 * 128.60801 * 23 21 20 44 44 H 1.09000 * 109.47165 * 248.60237 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5387 2.3400 0.4707 6 7 0.4119 2.2596 1.1460 7 14 2.3160 4.0073 0.1458 8 1 1.7988 4.5534 -1.1346 9 1 1.9760 4.9363 1.2534 10 1 3.7910 3.8577 0.0604 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 6 3.2169 -3.0352 -1.4437 14 7 3.4615 -3.4574 -2.8250 15 6 2.4848 -4.3023 -3.5167 16 6 4.5851 -3.0684 -3.4596 17 8 5.3939 -2.3693 -2.8870 18 6 4.8364 -3.5022 -4.8808 19 1 4.4720 -4.4960 -5.1406 20 6 4.7882 -2.4257 -5.9670 21 6 6.1306 -3.0276 -5.5466 22 6 6.8133 -3.9847 -6.5258 23 6 7.0706 -2.1488 -4.7190 24 1 -0.3633 0.0917 1.0236 25 1 -0.3633 0.8406 -0.5912 26 1 -0.3633 -0.9323 -0.4323 27 1 -0.0152 3.0661 1.4747 28 1 1.6084 -2.0286 0.5131 29 1 3.1499 -1.1387 0.5133 30 1 3.0415 -0.9500 -1.9568 31 1 1.5000 -1.8400 -1.9570 32 1 2.6274 -3.7948 -0.9303 33 1 4.1693 -2.9056 -0.9297 34 1 2.7264 -5.3514 -3.3460 35 1 1.4864 -4.0923 -3.1329 36 1 2.5147 -4.0919 -4.5857 37 1 4.5743 -1.4038 -5.6537 38 1 4.3917 -2.7112 -6.9413 39 1 7.7161 -3.5182 -6.9200 40 1 7.0772 -4.9069 -6.0081 41 1 6.1330 -4.2108 -7.3468 42 1 6.5496 -1.2387 -4.4218 43 1 7.3875 -2.6930 -3.8293 44 1 7.9446 -1.8886 -5.3162 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570195528.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:58 Heat of formation + Delta-G solvation = -12.920070 kcal Electronic energy + Delta-G solvation = -21025.485181 eV Core-core repulsion = 17978.628428 eV Total energy + Delta-G solvation = -3046.856752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36610 -38.67110 -37.72741 -36.59150 -34.12351 -32.12236 -30.34364 -28.36925 -28.11793 -27.84595 -27.06733 -24.93709 -23.25935 -21.98870 -20.65333 -19.48562 -18.79030 -18.18070 -17.16145 -16.67502 -16.38542 -15.93029 -15.52575 -15.29923 -14.91742 -14.63388 -14.54456 -14.46217 -14.07995 -13.78157 -13.53611 -13.35679 -13.25161 -12.97348 -12.85338 -12.74192 -12.68378 -12.57028 -12.50073 -12.27680 -12.12738 -12.11348 -11.90231 -11.45340 -11.16254 -10.80512 -10.69563 -10.42599 -9.64568 -8.78113 -7.86527 -5.35886 1.41133 1.41957 1.51161 1.52035 2.03618 2.47383 2.80163 3.25179 3.51152 3.67854 3.70174 3.84611 4.00404 4.14597 4.19795 4.31508 4.37876 4.51441 4.58027 4.67978 4.72830 4.74390 4.81512 4.82452 4.84263 4.91247 4.94882 4.97276 5.05730 5.08972 5.11584 5.23378 5.25667 5.31428 5.47626 5.52619 5.58456 5.63267 5.68219 6.30109 6.45441 7.12662 7.24349 7.85429 8.27144 9.15820 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021599 B = 0.004222 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.039032 B = 6630.968442 C = 7479.414034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.623 5.623 3 C -0.265 4.265 4 H 0.057 0.943 5 C -0.050 4.050 6 N -0.936 5.936 7 Si 0.965 3.035 8 H -0.284 1.284 9 H -0.287 1.287 10 H -0.275 1.275 11 C 0.153 3.847 12 C -0.127 4.127 13 C 0.125 3.875 14 N -0.615 5.615 15 C 0.073 3.927 16 C 0.525 3.475 17 O -0.579 6.579 18 C -0.186 4.186 19 H 0.154 0.846 20 C -0.141 4.141 21 C -0.101 4.101 22 C -0.109 4.109 23 C -0.100 4.100 24 H 0.007 0.993 25 H 0.011 0.989 26 H 0.035 0.965 27 H 0.250 0.750 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.021 0.979 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.046 0.954 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.565 -18.254 -16.399 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.346 5.346 3 C -0.396 4.396 4 H 0.075 0.925 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.794 3.206 8 H -0.211 1.211 9 H -0.213 1.213 10 H -0.200 1.200 11 C 0.026 3.974 12 C -0.168 4.168 13 C 0.002 3.998 14 N -0.347 5.347 15 C -0.069 4.069 16 C 0.315 3.685 17 O -0.459 6.459 18 C -0.207 4.207 19 H 0.171 0.829 20 C -0.178 4.178 21 C -0.102 4.102 22 C -0.166 4.166 23 C -0.157 4.157 24 H 0.025 0.975 25 H 0.030 0.970 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.154 0.846 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.861 -17.794 -16.002 24.895 hybrid contribution 0.053 1.465 0.452 1.534 sum 6.914 -16.329 -15.550 23.585 Atomic orbital electron populations 1.20541 0.82483 0.95993 0.97728 1.44155 1.02330 1.01694 1.86449 1.19415 0.98151 0.87304 1.34703 0.92527 1.25740 0.98681 1.01694 0.98414 1.70214 1.20659 1.27664 1.39745 0.85294 0.78184 0.79999 0.77172 1.21082 1.21333 1.19975 1.20798 0.95309 0.87099 0.94160 1.22258 0.99173 0.96214 0.99160 1.21357 1.00156 0.95875 0.82436 1.48006 1.21004 1.51347 1.14326 1.22061 0.92023 0.94488 0.98301 1.20459 0.80697 0.78979 0.88385 1.90703 1.46889 1.39434 1.68867 1.22456 1.06163 1.02232 0.89822 0.82881 1.23269 0.99983 0.96251 0.98297 1.21710 0.88697 1.00328 0.99443 1.21382 1.00722 0.97419 0.97029 1.21254 0.98086 0.98105 0.98283 0.97467 0.96967 0.94624 0.94096 0.92032 0.94867 0.96044 0.92340 0.87640 0.92187 0.90362 0.90314 0.89485 0.90842 0.84608 0.91180 0.91587 0.90284 0.94792 0.93530 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 8.98 127.77 1.15 10.24 16 2 N -0.62 -33.34 2.92 -726.95 -2.12 -35.46 16 3 C -0.27 -15.78 9.65 84.03 0.81 -14.97 16 4 H 0.06 3.41 7.86 -2.91 -0.02 3.39 16 5 C -0.05 -2.97 5.10 84.86 0.43 -2.54 16 6 N -0.94 -57.53 10.71 21.65 0.23 -57.30 16 7 Si 0.97 47.79 29.57 68.60 2.03 49.82 16 8 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 9 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.27 -13.27 7.11 99.48 0.71 -12.57 16 11 C 0.15 6.55 5.64 86.37 0.49 7.03 16 12 C -0.13 -4.71 5.86 30.59 0.18 -4.54 16 13 C 0.13 3.65 5.41 86.38 0.47 4.11 16 14 N -0.62 -15.63 2.87 -846.76 -2.43 -18.06 16 15 C 0.07 1.10 10.01 127.77 1.28 2.38 16 16 C 0.53 15.34 7.44 87.66 0.65 15.99 16 17 O -0.58 -22.36 12.69 -3.03 -0.04 -22.40 16 18 C -0.19 -3.70 4.52 -11.51 -0.05 -3.76 16 19 H 0.15 1.98 7.26 -2.39 -0.02 1.96 16 20 C -0.14 -2.63 9.52 30.60 0.29 -2.34 16 21 C -0.10 -1.99 2.70 -52.16 -0.14 -2.13 16 22 C -0.11 -1.35 9.85 71.98 0.71 -0.64 16 23 C -0.10 -2.59 8.09 71.98 0.58 -2.01 16 24 H 0.01 0.39 7.34 -2.39 -0.02 0.38 16 25 H 0.01 0.65 7.34 -2.39 -0.02 0.63 16 26 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.06 2.30 8.07 -2.38 -0.02 2.28 16 29 H 0.03 1.49 8.04 -2.39 -0.02 1.47 16 30 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.11 2.37 8.07 -2.39 -0.02 2.35 16 33 H 0.06 2.02 7.42 -2.39 -0.02 2.00 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 1.14 8.07 -2.38 -0.02 1.12 16 36 H 0.09 1.04 6.64 -2.39 -0.02 1.03 16 37 H 0.07 1.79 8.05 -2.39 -0.02 1.77 16 38 H 0.14 1.60 8.05 -2.39 -0.02 1.58 16 39 H 0.07 0.81 7.92 -2.39 -0.02 0.79 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.67 7.90 -2.39 -0.02 0.65 16 42 H 0.03 1.07 7.02 -2.39 -0.02 1.06 16 43 H 0.05 1.37 7.26 -2.39 -0.02 1.35 16 44 H 0.06 1.38 7.92 -2.39 -0.02 1.36 16 Total: -1.00 -75.67 352.03 5.45 -70.22 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.94 Total: 6.36 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 6.85 Total: 6.83 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.33 Total: -110.82 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.04 Total: -22.40 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -75.67 5.45 -70.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570195528.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.297 kcal (2) G-P(sol) polarization free energy of solvation -75.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds