Wall clock time and date at job start Mon Mar 30 2020 01:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47592 * 2 1 4 4 C 1.52997 * 109.46991 * 239.99657 * 2 1 3 5 5 C 1.53006 * 109.46626 * 120.00035 * 2 1 3 6 6 H 1.09000 * 109.47050 * 299.99699 * 5 2 1 7 7 C 1.52999 * 109.46623 * 179.97438 * 5 2 1 8 8 N 1.46504 * 109.46822 * 184.99666 * 7 5 2 9 9 C 1.36940 * 120.00039 * 180.02562 * 8 7 5 10 10 H 1.08001 * 119.99791 * 0.02562 * 9 8 7 11 11 C 1.38811 * 119.99997 * 180.02562 * 9 8 7 12 12 N 1.31620 * 119.99934 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 120.00097 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47087 * 90.00242 * 13 11 9 15 15 H 1.48499 * 109.47018 * 210.00179 * 13 11 9 16 16 H 1.48496 * 109.46929 * 330.00293 * 13 11 9 17 17 N 1.46500 * 109.47249 * 60.00049 * 5 2 1 18 18 C 1.34781 * 119.99732 * 274.99921 * 17 5 2 19 19 O 1.21283 * 119.99585 * 359.97438 * 18 17 5 20 20 C 1.50697 * 119.99747 * 179.97438 * 18 17 5 21 21 C 1.53000 * 115.55111 * 34.42025 * 20 18 17 22 22 C 1.53007 * 117.49845 * 248.74204 * 20 18 17 23 23 C 1.53000 * 117.49441 * 180.08568 * 20 18 17 24 24 H 1.09000 * 109.47160 * 300.00333 * 1 2 3 25 25 H 1.09002 * 109.46719 * 60.00054 * 1 2 3 26 26 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00227 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99654 * 3 2 1 30 30 H 1.09004 * 109.47261 * 300.00382 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00555 * 4 2 1 32 32 H 1.09001 * 109.47289 * 180.02562 * 4 2 1 33 33 H 1.08994 * 109.47465 * 305.00017 * 7 5 2 34 34 H 1.08998 * 109.47565 * 65.00449 * 7 5 2 35 35 H 0.96995 * 120.00028 * 0.02562 * 8 7 5 36 36 H 0.97004 * 120.00046 * 179.97438 * 12 11 9 37 37 H 0.96998 * 120.00364 * 94.99433 * 17 5 2 38 38 H 1.08993 * 109.47247 * 85.58212 * 21 20 18 39 39 H 1.09008 * 109.46554 * 205.58131 * 21 20 18 40 40 H 1.08997 * 109.46807 * 325.57188 * 21 20 18 41 41 H 1.08999 * 117.49759 * 0.02562 * 22 20 18 42 42 H 1.08994 * 117.49244 * 145.02222 * 22 20 18 43 43 H 1.09000 * 117.49664 * 214.97878 * 23 20 18 44 44 H 1.08994 * 117.50219 * 359.97438 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 1.6765 -0.2074 2.1393 7 6 3.5699 -0.7219 1.2490 8 7 4.0581 -1.5141 2.3805 9 6 5.4044 -1.6577 2.5856 10 1 6.1063 -1.1865 1.9134 11 6 5.8670 -2.4087 3.6574 12 7 7.1610 -2.5463 3.8548 13 14 4.6530 -3.2230 4.8205 14 1 4.3309 -4.5855 4.3253 15 1 5.2531 -3.3178 6.1755 16 1 3.4100 -2.4131 4.8850 17 7 1.5515 -2.1025 1.2493 18 6 0.3295 -2.3852 1.7425 19 8 -0.3656 -1.4961 2.1868 20 6 -0.1731 -3.8058 1.7420 21 6 0.8906 -4.8822 1.9675 22 6 -1.3332 -4.1445 0.8035 23 6 -1.5691 -4.0615 2.3137 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6765 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 3.9329 -1.1564 0.3177 34 1 3.9337 0.3017 1.3384 35 1 3.4277 -1.9369 2.9844 36 1 7.4843 -3.0709 4.6041 37 1 2.1076 -2.8136 0.8943 38 1 1.0407 -5.0262 3.0373 39 1 0.5608 -5.8187 1.5175 40 1 1.8278 -4.5686 1.5079 41 1 -1.7325 -3.3397 0.1862 42 1 -1.3386 -5.1342 0.3470 43 1 -1.7298 -4.9967 2.8500 44 1 -2.1238 -3.2022 2.6905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571623985.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:36 Heat of formation + Delta-G solvation = -31.017616 kcal Electronic energy + Delta-G solvation = -22235.384820 eV Core-core repulsion = 19187.743299 eV Total energy + Delta-G solvation = -3047.641521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.61435 -39.33556 -37.34472 -36.34782 -34.67571 -33.33949 -30.08418 -29.29217 -28.16827 -27.86026 -25.73072 -24.19079 -23.39551 -22.86977 -20.58863 -20.11218 -19.32855 -17.91439 -17.29074 -16.99103 -16.35452 -16.06666 -15.43776 -15.35358 -15.04726 -14.81111 -14.59338 -14.49582 -14.04655 -13.82878 -13.50662 -13.38231 -13.21665 -13.10177 -12.97830 -12.80382 -12.56009 -12.38808 -12.37279 -12.21059 -12.02979 -11.85275 -11.65949 -11.50697 -11.34680 -11.01077 -10.94558 -10.67830 -9.93176 -9.31614 -8.04954 -5.37816 1.32739 1.36076 1.42206 1.53359 2.18450 2.43985 2.85611 3.26769 3.44585 3.64883 3.69243 3.84571 3.90733 4.00181 4.03083 4.04769 4.28354 4.40141 4.59878 4.68357 4.76698 4.79492 4.80869 4.82309 4.86603 4.87577 4.93994 4.97107 5.04182 5.07034 5.11667 5.21483 5.22206 5.23580 5.29726 5.42688 5.53098 5.61600 5.74963 6.18629 6.57896 7.04552 7.27196 7.80225 7.98670 9.16342 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.007991 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.301072 B = 3503.145857 C = 4927.637245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 C -0.141 4.141 4 C -0.138 4.138 5 C 0.154 3.846 6 H 0.060 0.940 7 C 0.146 3.854 8 N -0.756 5.756 9 C -0.229 4.229 10 H 0.064 0.936 11 C -0.056 4.056 12 N -0.979 5.979 13 Si 0.945 3.055 14 H -0.267 1.267 15 H -0.297 1.297 16 H -0.271 1.271 17 N -0.706 5.706 18 C 0.543 3.457 19 O -0.573 6.573 20 C -0.184 4.184 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.147 4.147 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.042 0.958 35 H 0.363 0.637 36 H 0.258 0.742 37 H 0.408 0.592 38 H 0.054 0.946 39 H 0.094 0.906 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.151 -2.242 -10.664 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.072 4.072 3 C -0.199 4.199 4 C -0.195 4.195 5 C 0.049 3.951 6 H 0.078 0.922 7 C 0.020 3.980 8 N -0.402 5.402 9 C -0.360 4.360 10 H 0.082 0.918 11 C -0.248 4.248 12 N -0.630 5.630 13 Si 0.773 3.227 14 H -0.192 1.192 15 H -0.224 1.224 16 H -0.197 1.197 17 N -0.357 5.357 18 C 0.331 3.669 19 O -0.453 6.453 20 C -0.187 4.187 21 C -0.173 4.173 22 C -0.164 4.164 23 C -0.184 4.184 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.196 0.804 36 H 0.067 0.933 37 H 0.244 0.756 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.395 -1.566 -10.409 21.194 hybrid contribution 0.253 -0.564 1.155 1.310 sum -18.142 -2.130 -9.254 20.477 Atomic orbital electron populations 1.21762 0.93904 1.01116 1.00863 1.20846 0.96025 0.95958 0.94337 1.21897 1.01382 0.94286 1.02292 1.21881 1.01213 1.00173 0.96235 1.21155 0.92967 0.82504 0.98523 0.92219 1.21229 0.90941 0.95336 0.90503 1.42719 1.03062 1.62248 1.32182 1.19035 0.83245 1.24986 1.08752 0.91809 1.25358 0.97024 1.01886 1.00511 1.69858 1.13503 1.46633 1.32986 0.85566 0.78870 0.79517 0.78743 1.19203 1.22423 1.19657 1.45950 1.17368 1.09981 1.62401 1.19911 0.81058 0.89865 0.76050 1.90654 1.57466 1.49107 1.48106 1.21539 0.93005 0.92506 1.11661 1.21396 0.96520 0.97240 1.02176 1.23183 0.96298 1.04195 0.92683 1.23071 0.94323 1.03875 0.97141 0.94172 0.91906 0.93806 0.92187 0.90654 0.93323 0.92676 0.91189 0.92288 0.93235 0.93989 0.80437 0.93323 0.75559 0.92736 0.88761 0.92323 0.88859 0.85119 0.86083 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 7.00 71.98 0.50 -2.55 16 2 C -0.07 -1.77 0.62 -52.18 -0.03 -1.80 16 3 C -0.14 -3.29 8.12 71.98 0.58 -2.70 16 4 C -0.14 -2.99 7.97 71.98 0.57 -2.42 16 5 C 0.15 4.85 1.69 44.99 0.08 4.92 16 6 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 7 C 0.15 5.33 5.10 86.38 0.44 5.77 16 8 N -0.76 -34.83 5.24 -343.45 -1.80 -36.63 16 9 C -0.23 -12.84 10.47 84.03 0.88 -11.96 16 10 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 11 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 12 N -0.98 -62.10 13.97 21.65 0.30 -61.80 16 13 Si 0.94 45.99 27.74 68.60 1.90 47.89 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 15 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 16 H -0.27 -12.73 6.52 99.48 0.65 -12.08 16 17 N -0.71 -20.87 3.54 -442.52 -1.57 -22.43 16 18 C 0.54 16.45 5.75 87.66 0.50 16.96 16 19 O -0.57 -20.72 13.38 -3.04 -0.04 -20.76 16 20 C -0.18 -4.29 2.61 -52.93 -0.14 -4.42 16 21 C -0.12 -2.48 9.79 71.98 0.70 -1.78 16 22 C -0.13 -2.18 9.88 30.62 0.30 -1.87 16 23 C -0.15 -2.98 9.77 30.62 0.30 -2.68 16 24 H 0.04 1.19 7.53 -2.39 -0.02 1.17 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.18 5.78 -2.39 -0.01 1.17 16 27 H 0.06 1.44 6.54 -2.39 -0.02 1.43 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.18 7.60 -2.38 -0.02 1.16 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.06 1.35 6.32 -2.39 -0.02 1.33 16 33 H 0.05 1.73 6.17 -2.39 -0.01 1.71 16 34 H 0.04 1.58 6.71 -2.39 -0.02 1.56 16 35 H 0.36 16.67 5.20 -92.71 -0.48 16.19 16 36 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.41 11.32 6.90 -92.71 -0.64 10.68 16 38 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.45 7.90 -2.38 -0.02 1.43 16 40 H 0.06 1.34 6.39 -2.39 -0.02 1.33 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.13 1.52 8.05 -2.39 -0.02 1.51 16 43 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.09 2.13 7.67 -2.39 -0.02 2.12 16 Total: -1.00 -68.74 338.56 3.77 -64.96 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.19 Total: 36.09 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 5.16 Total: -7.33 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -3.06 Total: -120.85 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.04 Total: -20.76 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -68.74 3.77 -64.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571623985.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.946 kcal (2) G-P(sol) polarization free energy of solvation -68.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds