Wall clock time and date at job start Mon Mar 30 2020 01:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47646 * 2 1 4 4 C 1.53001 * 109.46876 * 239.99874 * 2 1 3 5 5 C 1.52999 * 109.46992 * 120.00322 * 2 1 3 6 6 H 1.08999 * 109.47091 * 179.97438 * 5 2 1 7 7 C 1.53001 * 109.46944 * 299.99510 * 5 2 1 8 8 N 1.46508 * 109.47024 * 175.00215 * 7 5 2 9 9 C 1.36933 * 119.99920 * 179.97438 * 8 7 5 10 10 H 1.08010 * 119.99913 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00299 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99433 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00477 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47227 * 90.00148 * 13 11 9 15 15 H 1.48499 * 109.47651 * 210.00379 * 13 11 9 16 16 H 1.48509 * 109.47152 * 330.00665 * 13 11 9 17 17 N 1.46499 * 109.47341 * 59.99623 * 5 2 1 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 5 2 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 5 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 5 21 21 C 1.52993 * 115.55481 * 34.41248 * 20 18 17 22 22 C 1.53001 * 117.49744 * 248.74262 * 20 18 17 23 23 C 1.53001 * 117.49592 * 180.08775 * 20 18 17 24 24 H 1.09001 * 109.46951 * 300.00229 * 1 2 3 25 25 H 1.08995 * 109.46927 * 59.99810 * 1 2 3 26 26 H 1.08996 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47585 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46693 * 300.00597 * 3 2 1 29 29 H 1.09007 * 109.46742 * 59.99677 * 3 2 1 30 30 H 1.08996 * 109.46985 * 300.00000 * 4 2 1 31 31 H 1.08995 * 109.47084 * 60.00412 * 4 2 1 32 32 H 1.08999 * 109.46935 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46944 * 295.00111 * 7 5 2 34 34 H 1.08997 * 109.47436 * 55.00260 * 7 5 2 35 35 H 0.96994 * 120.00145 * 0.02562 * 8 7 5 36 36 H 0.97005 * 119.99444 * 179.97438 * 12 11 9 37 37 H 0.97001 * 119.99790 * 264.99588 * 17 5 2 38 38 H 1.09000 * 109.47403 * 85.58558 * 21 20 18 39 39 H 1.09001 * 109.47412 * 205.58244 * 21 20 18 40 40 H 1.09003 * 109.47186 * 325.58281 * 21 20 18 41 41 H 1.09010 * 117.49969 * 359.97438 * 22 20 18 42 42 H 1.09002 * 117.50299 * 145.01859 * 22 20 18 43 43 H 1.09008 * 117.49721 * 214.97915 * 23 20 18 44 44 H 1.08997 * 117.49930 * 359.97438 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7217 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7567 3.6916 9 6 1.5691 -0.3005 4.9348 10 1 1.0080 0.6169 5.0357 11 6 1.9358 -1.0177 6.0653 12 7 2.6190 -2.1359 5.9423 13 14 1.4597 -0.3958 7.7612 14 1 0.1369 -0.9544 8.1399 15 1 2.4802 -0.8256 8.7506 16 1 1.3834 1.0872 7.7412 17 7 1.5516 -2.1025 1.2492 18 6 2.2314 -3.0576 0.5843 19 8 3.2447 -2.7727 -0.0181 20 6 1.7324 -4.4795 0.5895 21 6 0.2115 -4.6452 0.6025 22 6 2.5624 -5.5168 1.3485 23 6 2.5495 -5.5178 -0.1821 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 1.9647 0.9985 2.5443 34 1 0.4437 0.0783 2.4549 35 1 2.4217 -1.5804 3.6010 36 1 2.8756 -2.6369 6.7323 37 1 0.7412 -2.3303 1.7311 38 1 -0.1670 -4.6065 -0.4189 39 1 -0.0456 -5.6057 1.0491 40 1 -0.2366 -3.8413 1.1867 41 1 3.4697 -5.1707 1.8438 42 1 2.0250 -6.3173 1.8569 43 1 2.0035 -6.3190 -0.6803 44 1 3.4477 -5.1722 -0.6938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571623986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:39 Heat of formation + Delta-G solvation = -14.829445 kcal Electronic energy + Delta-G solvation = -22089.467858 eV Core-core repulsion = 19042.528309 eV Total energy + Delta-G solvation = -3046.939549 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23952 -38.05728 -36.05267 -34.40656 -33.16312 -31.05586 -28.71414 -27.61477 -27.09953 -26.65010 -24.04308 -22.83127 -22.33337 -21.34235 -19.18136 -18.50624 -17.18391 -16.59287 -15.86556 -15.45337 -14.73924 -14.45401 -14.14061 -13.88460 -13.61871 -13.47441 -13.10874 -12.96116 -12.65233 -12.47236 -12.27923 -11.98344 -11.89488 -11.77314 -11.38988 -11.32948 -11.18483 -11.06134 -10.81559 -10.69693 -10.49405 -10.41880 -10.20294 -9.92394 -9.85571 -9.73485 -9.34073 -8.88863 -8.48978 -6.93963 -5.77691 -3.07050 2.87456 3.41689 3.47237 3.48985 3.52031 4.00146 4.56332 4.74451 4.91307 4.96553 4.98549 5.04430 5.12104 5.23953 5.54208 5.60428 5.66385 5.72927 5.74745 5.76280 5.82080 5.86260 5.93977 5.95798 6.01224 6.07734 6.12094 6.14789 6.18519 6.21656 6.25971 6.34587 6.49676 6.50165 6.55651 6.68803 6.77974 7.04456 7.67873 7.98030 8.40221 8.66403 9.51974 10.08775 10.44247 11.44548 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.006732 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.224083 B = 4158.052215 C = 5487.028108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.129 4.129 5 C 0.149 3.851 6 H 0.085 0.915 7 C 0.141 3.859 8 N -0.731 5.731 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.703 5.703 18 C 0.552 3.448 19 O -0.546 6.546 20 C -0.165 4.165 21 C -0.113 4.113 22 C -0.145 4.145 23 C -0.149 4.149 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.028 0.972 35 H 0.386 0.614 36 H 0.255 0.745 37 H 0.403 0.597 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 -2.483 -13.819 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.186 4.186 5 C 0.044 3.956 6 H 0.103 0.897 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.218 1.218 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.353 5.353 18 C 0.338 3.662 19 O -0.424 6.424 20 C -0.168 4.168 21 C -0.170 4.170 22 C -0.183 4.183 23 C -0.186 4.186 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.220 0.780 36 H 0.065 0.935 37 H 0.239 0.761 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.163 -2.154 -14.096 14.855 hybrid contribution -0.491 -0.055 1.313 1.402 sum -4.654 -2.209 -12.783 13.782 Atomic orbital electron populations 1.21907 0.94759 1.01603 1.01548 1.20895 0.95796 0.95571 0.95523 1.21884 1.01166 0.95052 1.01722 1.21874 1.01570 0.99682 0.95473 1.21263 0.99714 0.80340 0.94285 0.89706 1.21098 0.97339 0.94694 0.85512 1.42359 1.66949 1.27781 1.00480 1.19206 1.28933 1.05472 0.83639 0.91217 1.24739 1.00889 0.97409 0.97789 1.69674 1.43227 1.16494 1.28437 0.86203 0.77537 0.78009 0.84491 1.21766 1.21806 1.20791 1.45873 1.29099 1.08160 1.52149 1.19300 0.83301 0.85411 0.78192 1.90656 1.25166 1.82366 1.44212 1.21477 0.95359 0.90412 1.09591 1.21329 0.91054 1.02589 1.02012 1.23084 1.01599 0.99045 0.94541 1.22994 1.01946 0.99049 0.94632 0.91951 0.93252 0.92894 0.92605 0.92948 0.91920 0.92851 0.94102 0.92094 0.94781 0.95439 0.78029 0.93544 0.76137 0.92000 0.91652 0.91726 0.88065 0.87995 0.88458 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 7.97 37.16 0.30 -1.50 16 2 C -0.08 -1.08 0.62 -154.51 -0.10 -1.17 16 3 C -0.14 -1.84 8.12 37.16 0.30 -1.54 16 4 C -0.13 -1.86 7.00 37.16 0.26 -1.60 16 5 C 0.15 2.55 1.69 -67.93 -0.11 2.43 16 6 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 7 C 0.14 2.75 5.10 -4.04 -0.02 2.73 16 8 N -0.73 -18.09 5.43 -59.90 -0.33 -18.41 16 9 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 10 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 13 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 N -0.70 -11.53 3.53 -53.81 -0.19 -11.72 16 18 C 0.55 9.25 5.76 -10.99 -0.06 9.18 16 19 O -0.55 -10.52 13.39 5.55 0.07 -10.45 16 20 C -0.17 -2.28 2.61 -155.66 -0.41 -2.69 16 21 C -0.11 -1.26 9.79 37.15 0.36 -0.90 16 22 C -0.15 -1.94 9.88 -26.70 -0.26 -2.21 16 23 C -0.15 -1.83 9.77 -26.70 -0.26 -2.09 16 24 H 0.06 0.81 6.32 -51.93 -0.33 0.49 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.67 7.60 -51.93 -0.39 0.27 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.83 6.54 -51.92 -0.34 0.49 16 30 H 0.05 0.82 5.79 -51.93 -0.30 0.52 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 33 H 0.03 0.68 6.71 -51.93 -0.35 0.33 16 34 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 35 H 0.39 10.25 7.33 -40.82 -0.30 9.95 16 36 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.40 6.45 6.90 -40.82 -0.28 6.17 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.65 7.90 -51.93 -0.41 0.24 16 40 H 0.06 0.74 6.39 -51.93 -0.33 0.41 16 41 H 0.10 1.54 8.14 -51.92 -0.42 1.11 16 42 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 43 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 44 H 0.10 1.42 7.67 -51.93 -0.40 1.02 16 LS Contribution 341.71 15.07 5.15 5.15 Total: -1.00 -30.65 341.71 -7.30 -37.95 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -7.46 Total: 13.97 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -0.25 Total: -6.56 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.21 Total: -57.25 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.65 -7.30 -37.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571623986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.124 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds