Wall clock time and date at job start Mon Mar 30 2020 01:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47646 * 2 1 4 4 C 1.53001 * 109.46876 * 239.99874 * 2 1 3 5 5 C 1.52999 * 109.46992 * 120.00322 * 2 1 3 6 6 H 1.08999 * 109.47091 * 179.97438 * 5 2 1 7 7 C 1.53001 * 109.46944 * 299.99510 * 5 2 1 8 8 N 1.46508 * 109.47024 * 175.00215 * 7 5 2 9 9 C 1.36933 * 119.99920 * 179.97438 * 8 7 5 10 10 H 1.08010 * 119.99913 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00299 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99433 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00477 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47227 * 90.00148 * 13 11 9 15 15 H 1.48499 * 109.47651 * 210.00379 * 13 11 9 16 16 H 1.48509 * 109.47152 * 330.00665 * 13 11 9 17 17 N 1.46499 * 109.47341 * 59.99623 * 5 2 1 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 5 2 19 19 O 1.21283 * 119.99990 * 359.71991 * 18 17 5 20 20 C 1.50698 * 119.99538 * 179.72653 * 18 17 5 21 21 C 1.52993 * 115.55481 * 34.41248 * 20 18 17 22 22 C 1.53001 * 117.49744 * 248.74262 * 20 18 17 23 23 C 1.53001 * 117.49592 * 180.08775 * 20 18 17 24 24 H 1.09001 * 109.46951 * 300.00229 * 1 2 3 25 25 H 1.08995 * 109.46927 * 59.99810 * 1 2 3 26 26 H 1.08996 * 109.47314 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47585 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.46693 * 300.00597 * 3 2 1 29 29 H 1.09007 * 109.46742 * 59.99677 * 3 2 1 30 30 H 1.08996 * 109.46985 * 300.00000 * 4 2 1 31 31 H 1.08995 * 109.47084 * 60.00412 * 4 2 1 32 32 H 1.08999 * 109.46935 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.46944 * 295.00111 * 7 5 2 34 34 H 1.08997 * 109.47436 * 55.00260 * 7 5 2 35 35 H 0.96994 * 120.00145 * 0.02562 * 8 7 5 36 36 H 0.97005 * 119.99444 * 179.97438 * 12 11 9 37 37 H 0.97001 * 119.99790 * 264.99588 * 17 5 2 38 38 H 1.09000 * 109.47403 * 85.58558 * 21 20 18 39 39 H 1.09001 * 109.47412 * 205.58244 * 21 20 18 40 40 H 1.09003 * 109.47186 * 325.58281 * 21 20 18 41 41 H 1.09010 * 117.49969 * 359.97438 * 22 20 18 42 42 H 1.09002 * 117.50299 * 145.01859 * 22 20 18 43 43 H 1.09008 * 117.49721 * 214.97915 * 23 20 18 44 44 H 1.08997 * 117.49930 * 359.97438 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7217 1.2490 7 6 1.5300 0.0000 2.4985 8 7 1.9176 -0.7567 3.6916 9 6 1.5691 -0.3005 4.9348 10 1 1.0080 0.6169 5.0357 11 6 1.9358 -1.0177 6.0653 12 7 2.6190 -2.1359 5.9423 13 14 1.4597 -0.3958 7.7612 14 1 0.1369 -0.9544 8.1399 15 1 2.4802 -0.8256 8.7506 16 1 1.3834 1.0872 7.7412 17 7 1.5516 -2.1025 1.2492 18 6 2.2314 -3.0576 0.5843 19 8 3.2447 -2.7727 -0.0181 20 6 1.7324 -4.4795 0.5895 21 6 0.2115 -4.6452 0.6025 22 6 2.5624 -5.5168 1.3485 23 6 2.5495 -5.5178 -0.1821 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1299 -0.7217 -1.2490 33 1 1.9647 0.9985 2.5443 34 1 0.4437 0.0783 2.4549 35 1 2.4217 -1.5804 3.6010 36 1 2.8756 -2.6369 6.7323 37 1 0.7412 -2.3303 1.7311 38 1 -0.1670 -4.6065 -0.4189 39 1 -0.0456 -5.6057 1.0491 40 1 -0.2366 -3.8413 1.1867 41 1 3.4697 -5.1707 1.8438 42 1 2.0250 -6.3173 1.8569 43 1 2.0035 -6.3190 -0.6803 44 1 3.4477 -5.1722 -0.6938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571623986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:38 Heat of formation + Delta-G solvation = -33.709640 kcal Electronic energy + Delta-G solvation = -22090.286565 eV Core-core repulsion = 19042.528309 eV Total energy + Delta-G solvation = -3047.758256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.54045 -39.28631 -37.29429 -36.19098 -34.60367 -32.98320 -29.88608 -29.03535 -28.15168 -27.85136 -25.83914 -24.27096 -23.36900 -22.88193 -20.47246 -19.86044 -19.00829 -17.87198 -17.26536 -16.90022 -16.42006 -15.75814 -15.50568 -15.29601 -15.01165 -14.85466 -14.59242 -14.22867 -13.91545 -13.70291 -13.41796 -13.20370 -13.06132 -13.01813 -12.93297 -12.74626 -12.54654 -12.39636 -12.34354 -12.18278 -12.01985 -11.75199 -11.63544 -11.47805 -11.28297 -10.94941 -10.91231 -10.63410 -9.85554 -8.99147 -7.93515 -5.23071 1.48058 1.49408 1.57730 1.59345 2.23852 2.56216 2.91356 3.40364 3.63361 3.68870 3.77880 3.89295 3.94535 4.01425 4.08105 4.25064 4.34286 4.43728 4.64367 4.71724 4.79285 4.82279 4.83973 4.87047 4.89862 4.92063 4.96462 4.97696 5.06239 5.08317 5.15131 5.22145 5.24193 5.29344 5.31263 5.45721 5.50762 5.55976 5.67440 6.26822 6.64366 7.33503 7.34004 8.07553 8.31749 9.29408 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.006732 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.224083 B = 4158.052215 C = 5487.028108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.071 4.071 3 C -0.139 4.139 4 C -0.119 4.119 5 C 0.157 3.843 6 H 0.050 0.950 7 C 0.144 3.856 8 N -0.742 5.742 9 C -0.243 4.243 10 H 0.078 0.922 11 C -0.073 4.073 12 N -0.967 5.967 13 Si 0.973 3.027 14 H -0.285 1.285 15 H -0.300 1.300 16 H -0.270 1.270 17 N -0.699 5.699 18 C 0.544 3.456 19 O -0.578 6.578 20 C -0.176 4.176 21 C -0.107 4.107 22 C -0.153 4.153 23 C -0.132 4.132 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.373 0.627 36 H 0.249 0.751 37 H 0.406 0.594 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -2.151 -14.652 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.177 4.177 5 C 0.052 3.948 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.385 5.385 9 C -0.375 4.375 10 H 0.096 0.904 11 C -0.266 4.266 12 N -0.618 5.618 13 Si 0.802 3.198 14 H -0.212 1.212 15 H -0.226 1.226 16 H -0.195 1.195 17 N -0.349 5.349 18 C 0.332 3.668 19 O -0.459 6.459 20 C -0.179 4.179 21 C -0.164 4.164 22 C -0.191 4.191 23 C -0.169 4.169 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.205 0.795 36 H 0.058 0.942 37 H 0.242 0.758 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.316 -1.784 -14.951 16.328 hybrid contribution 0.216 -0.117 1.514 1.534 sum -6.100 -1.901 -13.436 14.878 Atomic orbital electron populations 1.21866 0.92977 1.01997 1.02493 1.20857 0.97092 0.95709 0.93558 1.21882 1.00617 0.94360 1.02825 1.21758 1.00008 0.99386 0.96504 1.21091 0.97698 0.81121 0.94885 0.93169 1.21226 0.98070 0.94300 0.84616 1.42536 1.66824 1.27739 1.01443 1.19619 1.27823 1.05328 0.84729 0.90367 1.25545 1.01644 0.97895 1.01483 1.69841 1.45041 1.17941 1.28938 0.85153 0.76892 0.77968 0.79792 1.21184 1.22642 1.19518 1.45845 1.29064 1.07980 1.52007 1.19891 0.82786 0.86678 0.77460 1.90636 1.26536 1.83113 1.45596 1.21594 0.97243 0.88479 1.10631 1.21347 0.88647 1.03305 1.03141 1.23120 1.00792 0.99569 0.95577 1.23054 1.01176 0.98923 0.93733 0.92185 0.91080 0.92816 0.93599 0.90541 0.92073 0.93939 0.91780 0.94426 0.94624 0.93771 0.79547 0.94172 0.75791 0.90412 0.89921 0.92297 0.90941 0.85707 0.85084 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.97 71.98 0.57 -2.56 16 2 C -0.07 -1.92 0.62 -52.18 -0.03 -1.96 16 3 C -0.14 -3.44 8.12 71.98 0.58 -2.86 16 4 C -0.12 -3.35 7.00 71.98 0.50 -2.85 16 5 C 0.16 5.45 1.69 44.99 0.08 5.53 16 6 H 0.05 2.09 7.57 -2.39 -0.02 2.07 16 7 C 0.14 5.59 5.10 86.38 0.44 6.03 16 8 N -0.74 -37.15 5.43 -343.43 -1.87 -39.02 16 9 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 10 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 11 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 12 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 13 Si 0.97 45.70 29.55 68.60 2.03 47.72 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 15 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 N -0.70 -23.20 3.53 -442.54 -1.56 -24.76 16 18 C 0.54 18.61 5.76 87.66 0.50 19.11 16 19 O -0.58 -23.22 13.39 -3.04 -0.04 -23.26 16 20 C -0.18 -4.75 2.61 -52.93 -0.14 -4.89 16 21 C -0.11 -2.18 9.79 71.98 0.70 -1.47 16 22 C -0.15 -4.06 9.88 30.62 0.30 -3.76 16 23 C -0.13 -3.09 9.77 30.62 0.30 -2.79 16 24 H 0.06 1.41 6.32 -2.39 -0.02 1.40 16 25 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.23 7.60 -2.39 -0.02 1.21 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.52 6.54 -2.38 -0.02 1.51 16 30 H 0.04 1.28 5.79 -2.39 -0.01 1.26 16 31 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.22 7.53 -2.39 -0.02 1.20 16 33 H 0.04 1.40 6.71 -2.39 -0.02 1.38 16 34 H 0.04 1.61 6.17 -2.39 -0.01 1.59 16 35 H 0.37 20.41 7.33 -92.71 -0.68 19.73 16 36 H 0.25 14.83 8.31 -92.70 -0.77 14.05 16 37 H 0.41 12.95 6.90 -92.71 -0.64 12.31 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.40 7.90 -2.39 -0.02 1.38 16 40 H 0.06 1.25 6.39 -2.39 -0.02 1.24 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.12 2.69 8.05 -2.39 -0.02 2.68 16 43 H 0.13 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.09 2.38 7.67 -2.39 -0.02 2.37 16 Total: -1.00 -66.85 341.71 3.63 -63.21 By element: Atomic # 1 Polarization: 43.77 SS G_CDS: -0.33 Total: 43.44 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 5.13 Total: -8.63 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -3.15 Total: -122.48 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.04 Total: -23.26 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -66.85 3.63 -63.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571623986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.502 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds