Wall clock time and date at job start Mon Mar 30 2020 01:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 113.18202 * 2 1 4 4 C 1.55648 * 114.07099 * 227.15230 * 2 1 3 5 5 H 1.09002 * 114.06681 * 95.99295 * 4 2 1 6 6 N 1.46902 * 114.06535 * 323.80205 * 4 2 1 7 7 C 1.46900 * 111.00178 * 155.00001 * 6 4 2 8 8 C 1.52997 * 109.47100 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.47289 * 59.99970 * 8 7 6 10 10 O 1.42902 * 109.47264 * 299.99668 * 8 7 6 11 11 C 1.50703 * 109.46857 * 179.97438 * 8 7 6 12 12 H 1.08005 * 120.00146 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00112 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99659 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00349 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47677 * 89.99762 * 15 13 11 17 17 H 1.48496 * 109.47214 * 209.99998 * 15 13 11 18 18 H 1.48502 * 109.46938 * 329.99767 * 15 13 11 19 19 C 1.50460 * 84.23315 * 209.98497 * 4 2 1 20 20 H 1.08999 * 112.99919 * 282.25420 * 19 4 2 21 21 C 1.51673 * 124.50555 * 140.41648 * 19 4 2 22 22 C 1.54165 * 105.70284 * 202.90713 * 21 19 4 23 23 C 1.52356 * 112.36268 * 53.81873 * 22 21 19 24 24 N 1.47533 * 111.88849 * 307.54851 * 23 22 21 25 25 C 1.45222 * 107.31849 * 59.71381 * 24 23 22 26 26 H 1.09002 * 111.90969 * 52.92790 * 25 24 23 27 27 H 1.09001 * 109.47082 * 287.38241 * 1 2 3 28 28 H 1.09000 * 109.47082 * 47.38456 * 1 2 3 29 29 H 1.09004 * 109.46825 * 167.38975 * 1 2 3 30 30 H 1.09001 * 109.47065 * 192.61923 * 3 2 1 31 31 H 1.09005 * 109.46535 * 312.61065 * 3 2 1 32 32 H 1.08988 * 109.47409 * 72.61385 * 3 2 1 33 33 H 1.00903 * 110.99856 * 278.95079 * 6 4 2 34 34 H 1.09004 * 109.46690 * 299.99583 * 7 6 4 35 35 H 1.08998 * 109.47409 * 59.99468 * 7 6 4 36 36 H 0.96701 * 113.99136 * 300.00045 * 10 8 7 37 37 H 0.96999 * 119.99971 * 180.02562 * 14 13 11 38 38 H 1.09008 * 110.19097 * 321.94753 * 21 19 4 39 39 H 1.08996 * 110.19697 * 83.86111 * 21 19 4 40 40 H 1.08998 * 108.90279 * 174.56417 * 22 21 19 41 41 H 1.09001 * 108.90191 * 293.07892 * 22 21 19 42 42 H 1.09004 * 108.84015 * 68.78596 * 23 22 21 43 43 H 1.09001 * 108.84432 * 187.24094 * 23 22 21 44 44 H 1.00901 * 112.30629 * 297.46052 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1323 1.4065 0.0000 4 6 2.1648 -0.9664 -1.0419 5 1 2.4410 -0.4879 -1.9815 6 7 1.4208 -2.2194 -1.2279 7 6 1.6780 -2.7923 -2.5559 8 6 0.8883 -4.0934 -2.7117 9 1 -0.1767 -3.8871 -2.6050 10 8 1.2968 -5.0220 -1.7052 11 6 1.1517 -4.6807 -4.0744 12 1 1.8162 -4.1766 -4.7605 13 6 0.5452 -5.8622 -4.4448 14 7 -0.2637 -6.4763 -3.6092 15 14 0.8721 -6.5906 -6.1336 16 1 2.0418 -7.5026 -6.0614 17 1 -0.3212 -7.3508 -6.5842 18 1 1.1556 -5.4973 -7.0977 19 6 3.2870 -1.0614 -0.0442 20 1 3.9487 -0.1955 -0.0638 21 6 4.0319 -2.3392 0.2920 22 6 4.6308 -2.1161 1.6950 23 6 3.5790 -1.6967 2.7143 24 7 2.7922 -0.5390 2.2482 25 6 2.1425 -0.9285 1.0092 26 1 1.5785 -1.8547 1.1194 27 1 -0.3633 0.3070 0.9807 28 1 -0.3633 0.6958 -0.7563 29 1 -0.3633 -1.0029 -0.2244 30 1 3.1972 1.3457 -0.2245 31 1 1.6357 2.0144 -0.7564 32 1 1.9931 1.8614 0.9806 33 1 1.6409 -2.8821 -0.4995 34 1 1.3668 -2.0838 -3.3236 35 1 2.7429 -2.9989 -2.6625 36 1 2.2354 -5.2519 -1.7401 37 1 -0.6901 -7.3077 -3.8696 38 1 3.3427 -3.1836 0.3070 39 1 4.8268 -2.5133 -0.4331 40 1 5.0985 -3.0417 2.0305 41 1 5.3930 -1.3393 1.6341 42 1 2.9133 -2.5396 2.9003 43 1 4.0781 -1.4307 3.6461 44 1 3.3623 0.2827 2.1148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576392518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:57 Heat of formation + Delta-G solvation = -13.512205 kcal Electronic energy + Delta-G solvation = -22063.071921 eV Core-core repulsion = 19016.189492 eV Total energy + Delta-G solvation = -3046.882429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60617 -36.54361 -35.73580 -33.31115 -32.11086 -31.55148 -29.82022 -28.05081 -27.15778 -25.72298 -23.86996 -23.19188 -21.53299 -20.49555 -19.90867 -18.30977 -16.98286 -15.87684 -15.36228 -15.28908 -14.80343 -14.57611 -14.52411 -14.06365 -13.63818 -13.36540 -13.31218 -12.98369 -12.69312 -12.54944 -12.05152 -11.99816 -11.90616 -11.56826 -11.51255 -11.27443 -11.06707 -10.92882 -10.84451 -10.78948 -10.65512 -10.49450 -10.14291 -10.01229 -9.89150 -9.00989 -8.58172 -8.18843 -7.98638 -7.73665 -6.00717 -4.19018 3.27011 3.34362 3.36929 3.93334 4.25536 4.41063 4.53198 4.77618 4.83799 4.99909 5.09861 5.10280 5.22757 5.26692 5.36531 5.45218 5.55387 5.72625 5.73071 5.78524 5.80789 5.85499 5.95100 6.02109 6.04652 6.13146 6.14665 6.18555 6.25014 6.31068 6.35820 6.44957 6.52220 6.77832 6.88802 6.98963 7.42829 7.55466 7.76090 7.85232 7.99360 8.22597 8.84352 9.36319 9.57777 11.03541 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.004755 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.829661 B = 5886.535501 C = 6322.275365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.063 4.063 3 C -0.130 4.130 4 C 0.095 3.905 5 H 0.077 0.923 6 N -0.661 5.661 7 C 0.039 3.961 8 C 0.232 3.768 9 H 0.064 0.936 10 O -0.565 6.565 11 C -0.573 4.573 12 H 0.054 0.946 13 C 0.080 3.920 14 N -0.858 5.858 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C -0.208 4.208 20 H 0.089 0.911 21 C -0.104 4.104 22 C -0.151 4.151 23 C 0.060 3.940 24 N -0.669 5.669 25 C 0.068 3.932 26 H 0.108 0.892 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.345 0.655 34 H 0.065 0.935 35 H 0.017 0.983 36 H 0.340 0.660 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 12.472 9.815 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.018 4.018 5 H 0.095 0.905 6 N -0.293 5.293 7 C -0.090 4.090 8 C 0.174 3.826 9 H 0.082 0.918 10 O -0.367 6.367 11 C -0.611 4.611 12 H 0.072 0.928 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.230 4.230 20 H 0.107 0.893 21 C -0.142 4.142 22 C -0.190 4.190 23 C -0.070 4.070 24 N -0.296 5.296 25 C -0.042 4.042 26 H 0.125 0.875 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.166 0.834 34 H 0.083 0.917 35 H 0.035 0.965 36 H 0.183 0.817 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.206 12.523 10.280 17.350 hybrid contribution 2.585 -0.781 -1.786 3.237 sum 8.791 11.741 8.495 16.949 Atomic orbital electron populations 1.21600 0.93253 1.03625 1.00252 1.21750 0.96307 0.93670 0.94714 1.21632 1.00092 0.95023 1.02000 1.22197 0.90757 0.92954 0.95870 0.90468 1.60252 1.57986 1.05237 1.05834 1.22869 0.98013 0.99470 0.88634 1.19427 0.94706 0.81915 0.86529 0.91841 1.86595 1.27559 1.66329 1.56186 1.21621 1.29967 1.08612 1.00924 0.92766 1.25025 0.94159 0.96795 0.96636 1.70083 1.28015 1.16593 1.34651 0.86680 0.77833 0.79268 0.84619 1.20614 1.21080 1.19856 1.24001 0.97563 0.98964 1.02475 0.89281 1.21329 0.99712 0.97528 0.95649 1.22148 0.98974 1.01628 0.96271 1.21903 0.94506 0.93794 0.96756 1.60393 1.31777 1.05814 1.31665 1.23017 0.95405 0.99604 0.86208 0.87452 0.93492 0.93379 0.90132 0.92728 0.92293 0.91995 0.83352 0.91682 0.96483 0.81733 0.92997 0.91224 0.92338 0.91634 0.92744 0.90860 0.91189 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.22 37.16 0.34 -1.41 16 2 C -0.06 -0.79 1.45 -157.78 -0.23 -1.02 16 3 C -0.13 -1.35 8.47 37.16 0.31 -1.03 16 4 C 0.09 1.35 3.90 -71.08 -0.28 1.07 16 5 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 6 N -0.66 -11.35 5.04 -110.33 -0.56 -11.90 16 7 C 0.04 0.78 5.17 -3.83 -0.02 0.76 16 8 C 0.23 5.78 3.10 -27.88 -0.09 5.69 16 9 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 10 O -0.56 -14.07 12.07 -35.23 -0.43 -14.50 16 11 C -0.57 -15.61 8.76 -34.44 -0.30 -15.92 16 12 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 13 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 14 N -0.86 -25.35 12.84 55.43 0.71 -24.63 16 15 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 C -0.21 -2.57 2.91 -94.18 -0.27 -2.84 16 20 H 0.09 1.04 6.06 -51.93 -0.31 0.72 16 21 C -0.10 -1.30 5.94 -26.79 -0.16 -1.45 16 22 C -0.15 -1.56 5.91 -26.45 -0.16 -1.71 16 23 C 0.06 0.62 6.44 -3.81 -0.02 0.60 16 24 N -0.67 -7.52 7.03 -111.27 -0.78 -8.30 16 25 C 0.07 0.86 2.89 -71.85 -0.21 0.65 16 26 H 0.11 1.60 6.52 -51.93 -0.34 1.26 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.27 7.01 -51.93 -0.36 0.90 16 30 H 0.05 0.53 6.13 -51.93 -0.32 0.21 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.60 8.11 -51.94 -0.42 0.18 16 33 H 0.34 6.05 4.92 -39.29 -0.19 5.86 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.34 7.56 9.04 45.56 0.41 7.98 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.07 0.97 6.58 -51.92 -0.34 0.63 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.34 3.41 7.99 -39.29 -0.31 3.10 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -28.65 333.15 -9.02 -37.66 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -6.79 Total: 15.02 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -1.17 Total: -14.47 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: -0.63 Total: -44.84 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.43 Total: -14.50 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.65 -9.02 -37.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.150 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds