Wall clock time and date at job start Mon Mar 30 2020 01:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 113.18202 * 2 1 4 4 C 1.55648 * 114.07099 * 227.15230 * 2 1 3 5 5 H 1.09002 * 114.06681 * 95.99295 * 4 2 1 6 6 N 1.46902 * 114.06535 * 323.80205 * 4 2 1 7 7 C 1.46900 * 111.00178 * 155.00001 * 6 4 2 8 8 C 1.52997 * 109.47100 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.47289 * 59.99970 * 8 7 6 10 10 O 1.42902 * 109.47264 * 299.99668 * 8 7 6 11 11 C 1.50703 * 109.46857 * 179.97438 * 8 7 6 12 12 H 1.08005 * 120.00146 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00112 * 179.97438 * 11 8 7 14 14 N 1.31519 * 119.99659 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00349 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47677 * 89.99762 * 15 13 11 17 17 H 1.48496 * 109.47214 * 209.99998 * 15 13 11 18 18 H 1.48502 * 109.46938 * 329.99767 * 15 13 11 19 19 C 1.50460 * 84.23315 * 209.98497 * 4 2 1 20 20 H 1.08999 * 112.99919 * 282.25420 * 19 4 2 21 21 C 1.51673 * 124.50555 * 140.41648 * 19 4 2 22 22 C 1.54165 * 105.70284 * 202.90713 * 21 19 4 23 23 C 1.52356 * 112.36268 * 53.81873 * 22 21 19 24 24 N 1.47533 * 111.88849 * 307.54851 * 23 22 21 25 25 C 1.45222 * 107.31849 * 59.71381 * 24 23 22 26 26 H 1.09002 * 111.90969 * 52.92790 * 25 24 23 27 27 H 1.09001 * 109.47082 * 287.38241 * 1 2 3 28 28 H 1.09000 * 109.47082 * 47.38456 * 1 2 3 29 29 H 1.09004 * 109.46825 * 167.38975 * 1 2 3 30 30 H 1.09001 * 109.47065 * 192.61923 * 3 2 1 31 31 H 1.09005 * 109.46535 * 312.61065 * 3 2 1 32 32 H 1.08988 * 109.47409 * 72.61385 * 3 2 1 33 33 H 1.00903 * 110.99856 * 278.95079 * 6 4 2 34 34 H 1.09004 * 109.46690 * 299.99583 * 7 6 4 35 35 H 1.08998 * 109.47409 * 59.99468 * 7 6 4 36 36 H 0.96701 * 113.99136 * 300.00045 * 10 8 7 37 37 H 0.96999 * 119.99971 * 180.02562 * 14 13 11 38 38 H 1.09008 * 110.19097 * 321.94753 * 21 19 4 39 39 H 1.08996 * 110.19697 * 83.86111 * 21 19 4 40 40 H 1.08998 * 108.90279 * 174.56417 * 22 21 19 41 41 H 1.09001 * 108.90191 * 293.07892 * 22 21 19 42 42 H 1.09004 * 108.84015 * 68.78596 * 23 22 21 43 43 H 1.09001 * 108.84432 * 187.24094 * 23 22 21 44 44 H 1.00901 * 112.30629 * 297.46052 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1323 1.4065 0.0000 4 6 2.1648 -0.9664 -1.0419 5 1 2.4410 -0.4879 -1.9815 6 7 1.4208 -2.2194 -1.2279 7 6 1.6780 -2.7923 -2.5559 8 6 0.8883 -4.0934 -2.7117 9 1 -0.1767 -3.8871 -2.6050 10 8 1.2968 -5.0220 -1.7052 11 6 1.1517 -4.6807 -4.0744 12 1 1.8162 -4.1766 -4.7605 13 6 0.5452 -5.8622 -4.4448 14 7 -0.2637 -6.4763 -3.6092 15 14 0.8721 -6.5906 -6.1336 16 1 2.0418 -7.5026 -6.0614 17 1 -0.3212 -7.3508 -6.5842 18 1 1.1556 -5.4973 -7.0977 19 6 3.2870 -1.0614 -0.0442 20 1 3.9487 -0.1955 -0.0638 21 6 4.0319 -2.3392 0.2920 22 6 4.6308 -2.1161 1.6950 23 6 3.5790 -1.6967 2.7143 24 7 2.7922 -0.5390 2.2482 25 6 2.1425 -0.9285 1.0092 26 1 1.5785 -1.8547 1.1194 27 1 -0.3633 0.3070 0.9807 28 1 -0.3633 0.6958 -0.7563 29 1 -0.3633 -1.0029 -0.2244 30 1 3.1972 1.3457 -0.2245 31 1 1.6357 2.0144 -0.7564 32 1 1.9931 1.8614 0.9806 33 1 1.6409 -2.8821 -0.4995 34 1 1.3668 -2.0838 -3.3236 35 1 2.7429 -2.9989 -2.6625 36 1 2.2354 -5.2519 -1.7401 37 1 -0.6901 -7.3077 -3.8696 38 1 3.3427 -3.1836 0.3070 39 1 4.8268 -2.5133 -0.4331 40 1 5.0985 -3.0417 2.0305 41 1 5.3930 -1.3393 1.6341 42 1 2.9133 -2.5396 2.9003 43 1 4.0781 -1.4307 3.6461 44 1 3.3623 0.2827 2.1148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576392518.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:56 Heat of formation + Delta-G solvation = -35.165712 kcal Electronic energy + Delta-G solvation = -22064.010888 eV Core-core repulsion = 19016.189492 eV Total energy + Delta-G solvation = -3047.821396 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65423 -38.23273 -36.92738 -34.74962 -34.21751 -32.65221 -30.87243 -29.73236 -28.23772 -26.99235 -25.53792 -24.26540 -22.55525 -22.27683 -20.94724 -19.41627 -18.97448 -17.11913 -16.71338 -16.56138 -16.37508 -16.11629 -15.76818 -15.54518 -15.04888 -14.59467 -14.41755 -14.24836 -14.01431 -13.88693 -13.20549 -13.14805 -13.05732 -12.92275 -12.83257 -12.75256 -12.65637 -12.50457 -12.41783 -12.06797 -11.86706 -11.64730 -11.50210 -11.22885 -10.97540 -10.91394 -10.72294 -10.15183 -9.14937 -8.90541 -8.14225 -6.40283 1.39575 1.40540 1.51369 2.37775 2.99081 3.08905 3.13012 3.47925 3.78517 3.80718 4.01116 4.08285 4.20229 4.26095 4.30245 4.39233 4.50898 4.52687 4.54827 4.59668 4.69775 4.81391 4.85000 4.89946 4.97688 5.04287 5.05580 5.09100 5.12005 5.15795 5.23565 5.27259 5.33809 5.50509 5.61600 5.67452 5.75135 6.02286 6.05093 6.26612 6.54283 6.62146 6.73892 7.32057 7.52213 8.90411 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026921 B = 0.004755 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.829661 B = 5886.535501 C = 6322.275365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.124 4.124 4 C 0.081 3.919 5 H 0.075 0.925 6 N -0.665 5.665 7 C 0.061 3.939 8 C 0.234 3.766 9 H 0.021 0.979 10 O -0.576 6.576 11 C -0.587 4.587 12 H 0.058 0.942 13 C 0.027 3.973 14 N -0.899 5.899 15 Si 0.960 3.040 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.265 1.265 19 C -0.196 4.196 20 H 0.108 0.892 21 C -0.107 4.107 22 C -0.143 4.143 23 C 0.060 3.940 24 N -0.669 5.669 25 C 0.074 3.926 26 H 0.079 0.921 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.341 0.659 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.351 0.649 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 13.969 9.933 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.056 4.056 3 C -0.182 4.182 4 C -0.031 4.031 5 H 0.093 0.907 6 N -0.296 5.296 7 C -0.068 4.068 8 C 0.177 3.823 9 H 0.039 0.961 10 O -0.379 6.379 11 C -0.625 4.625 12 H 0.077 0.923 13 C -0.176 4.176 14 N -0.536 5.536 15 Si 0.785 3.215 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.189 1.189 19 C -0.218 4.218 20 H 0.126 0.874 21 C -0.145 4.145 22 C -0.182 4.182 23 C -0.069 4.069 24 N -0.298 5.298 25 C -0.036 4.036 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.096 14.045 10.403 19.262 hybrid contribution 1.978 -1.237 -1.766 2.926 sum 10.074 12.808 8.637 18.442 Atomic orbital electron populations 1.21553 0.94263 1.01975 1.00786 1.21769 0.95562 0.94816 0.93489 1.21615 1.00595 0.93056 1.02912 1.22297 0.92171 0.91883 0.96715 0.90716 1.60175 1.59175 1.06125 1.04166 1.22409 0.97082 0.97018 0.90289 1.19209 0.93200 0.84071 0.85855 0.96063 1.86531 1.28616 1.66764 1.56035 1.22017 1.29731 1.08849 1.01942 0.92345 1.25896 0.93797 0.97302 1.00609 1.70226 1.29331 1.17139 1.36918 0.85554 0.77761 0.78517 0.79704 1.19779 1.20899 1.18936 1.23935 0.97260 0.99603 1.00958 0.87397 1.21336 0.99171 0.96756 0.97205 1.22081 0.99017 1.02494 0.94615 1.21933 0.94240 0.93126 0.97628 1.60346 1.32301 1.06509 1.30650 1.22749 0.95267 0.98532 0.87101 0.90284 0.92736 0.92869 0.93011 0.91546 0.91823 0.90844 0.83715 0.92021 0.96096 0.80441 0.92996 0.93507 0.92655 0.91031 0.91235 0.92336 0.89100 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.22 71.98 0.66 -2.77 16 2 C -0.05 -1.30 1.45 -54.30 -0.08 -1.38 16 3 C -0.12 -2.21 8.47 71.98 0.61 -1.60 16 4 C 0.08 2.26 3.90 42.74 0.17 2.43 16 5 H 0.07 2.14 7.87 -2.39 -0.02 2.12 16 6 N -0.66 -23.43 5.04 -502.98 -2.53 -25.97 16 7 C 0.06 2.52 5.17 86.30 0.45 2.96 16 8 C 0.23 12.09 3.10 29.85 0.09 12.18 16 9 H 0.02 1.28 8.14 -2.38 -0.02 1.26 16 10 O -0.58 -29.67 12.07 -148.98 -1.80 -31.47 16 11 C -0.59 -32.44 8.76 25.60 0.22 -32.21 16 12 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.03 1.49 5.40 84.65 0.46 1.95 16 14 N -0.90 -54.31 12.84 21.45 0.28 -54.04 16 15 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 C -0.20 -4.52 2.91 -13.10 -0.04 -4.56 16 20 H 0.11 2.15 6.06 -2.39 -0.01 2.13 16 21 C -0.11 -2.54 5.94 30.55 0.18 -2.36 16 22 C -0.14 -2.64 5.91 30.78 0.18 -2.45 16 23 C 0.06 1.13 6.44 85.97 0.55 1.68 16 24 N -0.67 -13.58 7.03 -505.94 -3.56 -17.14 16 25 C 0.07 1.80 2.89 43.14 0.12 1.92 16 26 H 0.08 2.40 6.52 -2.39 -0.02 2.39 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.68 7.01 -2.38 -0.02 1.67 16 30 H 0.07 1.04 6.13 -2.39 -0.01 1.02 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.17 8.11 -2.39 -0.02 1.15 16 33 H 0.34 12.49 4.92 -89.69 -0.44 12.05 16 34 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.35 16.03 9.04 -74.06 -0.67 15.36 16 37 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 38 H 0.05 1.33 6.58 -2.38 -0.02 1.31 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.35 5.86 7.99 -89.69 -0.72 5.14 16 Total: -1.00 -62.35 333.15 -2.83 -65.18 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.83 Total: 42.13 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.58 Total: -24.22 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -5.82 Total: -97.15 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.80 Total: -31.47 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -62.35 -2.83 -65.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392518.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.013 kcal (2) G-P(sol) polarization free energy of solvation -62.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds