Wall clock time and date at job start Mon Mar 30 2020 01:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 113.18364 * 2 1 4 4 C 1.50192 * 114.06807 * 132.61197 * 2 1 3 5 5 H 1.09004 * 112.46868 * 38.21650 * 4 2 1 6 6 N 1.45220 * 126.15688 * 254.87345 * 4 2 1 7 7 C 1.48190 * 106.96822 * 198.28334 * 6 4 2 8 8 C 1.52353 * 112.68133 * 58.34900 * 7 6 4 9 9 C 1.54168 * 112.36053 * 307.95426 * 8 7 6 10 10 C 1.51686 * 105.69919 * 53.82838 * 9 8 7 11 11 H 1.09001 * 112.02508 * 60.75279 * 10 9 8 12 12 C 1.49427 * 123.68260 * 202.75725 * 10 9 8 13 13 H 1.09004 * 115.30640 * 27.94382 * 12 10 9 14 14 N 1.46898 * 113.54095 * 255.02314 * 12 10 9 15 15 C 1.46897 * 110.99801 * 111.54938 * 14 12 10 16 16 C 1.53004 * 109.47146 * 180.02562 * 15 14 12 17 17 H 1.09010 * 109.46667 * 60.00158 * 16 15 14 18 18 O 1.42902 * 109.47068 * 300.00671 * 16 15 14 19 19 C 1.50694 * 109.47446 * 179.97438 * 16 15 14 20 20 H 1.07998 * 120.00269 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00268 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99658 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 120.00360 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.46712 * 90.00245 * 23 21 19 25 25 H 1.48502 * 109.47440 * 210.00319 * 23 21 19 26 26 H 1.48497 * 109.46923 * 330.00801 * 23 21 19 27 27 H 1.09003 * 109.47194 * 287.39217 * 1 2 3 28 28 H 1.09003 * 109.46831 * 47.38200 * 1 2 3 29 29 H 1.08993 * 109.47355 * 167.38500 * 1 2 3 30 30 H 1.09006 * 109.47096 * 199.13846 * 3 2 1 31 31 H 1.09001 * 109.46936 * 319.13389 * 3 2 1 32 32 H 1.08996 * 109.47689 * 79.13369 * 3 2 1 33 33 H 1.00906 * 110.99554 * 319.50606 * 6 4 2 34 34 H 1.09005 * 108.83804 * 179.17147 * 7 6 4 35 35 H 1.08999 * 108.84246 * 297.51725 * 7 6 4 36 36 H 1.09006 * 108.90293 * 187.21465 * 8 7 6 37 37 H 1.08994 * 108.83211 * 68.65062 * 8 7 6 38 38 H 1.08994 * 110.19580 * 294.78357 * 9 8 7 39 39 H 1.08992 * 110.30461 * 172.93153 * 9 8 7 40 40 H 1.00898 * 111.00118 * 235.50903 * 14 12 10 41 41 H 1.08995 * 109.47578 * 300.00152 * 15 14 12 42 42 H 1.09002 * 109.47112 * 60.00825 * 15 14 12 43 43 H 0.96706 * 113.99926 * 299.99458 * 18 16 15 44 44 H 0.97001 * 119.99563 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1323 1.4065 0.0000 4 6 2.1425 -0.9284 1.0092 5 1 1.5897 -1.8631 1.1048 6 7 2.7712 -0.5406 2.2595 7 6 3.6044 -1.6850 2.6978 8 6 4.6580 -2.0732 1.6680 9 6 4.0548 -2.2943 0.2666 10 6 3.2827 -1.0282 -0.0524 11 1 3.9271 -0.1492 -0.0673 12 6 2.1647 -0.9664 -1.0419 13 1 1.6127 -1.8961 -1.1799 14 7 2.5370 -0.3216 -2.3082 15 6 2.5586 -1.2950 -3.4082 16 6 2.9502 -0.5879 -4.7073 17 1 3.9395 -0.1440 -4.5954 18 8 1.9981 0.4376 -4.9972 19 6 2.9730 -1.5865 -5.8357 20 1 2.7318 -2.6219 -5.6454 21 6 3.3006 -1.1782 -7.1112 22 7 3.5938 0.0828 -7.3430 23 14 3.3282 -2.4159 -8.5100 24 1 1.9859 -2.4781 -9.1423 25 1 4.3327 -1.9983 -9.5209 26 1 3.6876 -3.7552 -7.9788 27 1 -0.3634 0.3072 0.9807 28 1 -0.3633 0.6959 -0.7563 29 1 -0.3634 -1.0028 -0.2244 30 1 3.1678 1.3582 -0.3369 31 1 1.5609 2.0464 -0.6724 32 1 2.0973 1.8168 1.0092 33 1 3.3318 0.2899 2.1399 34 1 4.1039 -1.4202 3.6298 35 1 2.9568 -2.5427 2.8795 36 1 5.1460 -2.9926 1.9915 37 1 5.4030 -1.2797 1.6107 38 1 3.3827 -3.1523 0.2773 39 1 4.8469 -2.4467 -0.4664 40 1 1.9185 0.4475 -2.5179 41 1 3.2851 -2.0769 -3.1873 42 1 1.5694 -1.7391 -3.5198 43 1 1.0937 0.1142 -5.1098 44 1 3.8246 0.3699 -8.2403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576392519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:00 Heat of formation + Delta-G solvation = -18.441734 kcal Electronic energy + Delta-G solvation = -21758.011173 eV Core-core repulsion = 18710.914983 eV Total energy + Delta-G solvation = -3047.096190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52397 -36.66537 -35.71822 -33.11228 -32.10558 -31.73539 -29.96048 -28.00286 -27.53192 -25.65425 -24.13605 -22.73580 -21.02256 -20.45473 -20.18780 -18.57544 -16.95028 -15.79289 -15.78482 -15.09869 -14.77681 -14.57147 -14.32758 -14.03036 -13.74390 -13.44922 -13.39704 -12.93344 -12.68685 -12.52733 -12.22906 -12.06514 -11.88626 -11.67072 -11.51708 -11.12076 -11.08256 -10.94115 -10.90103 -10.74020 -10.69838 -10.47642 -10.25352 -10.02087 -9.92721 -8.99598 -8.57042 -8.23413 -8.01691 -7.72401 -5.99685 -4.17934 3.27432 3.34593 3.37303 3.86188 4.36781 4.38195 4.57577 4.71274 4.83521 4.95821 5.00606 5.13783 5.15822 5.27664 5.31677 5.47050 5.56033 5.60239 5.66117 5.73484 5.83090 5.86620 5.92506 5.99012 6.04783 6.05127 6.09511 6.14718 6.18708 6.28294 6.35105 6.44343 6.48513 6.59632 6.87509 6.91709 7.31612 7.62694 7.77698 7.89702 8.04120 8.25550 8.85809 9.39001 9.59270 11.04561 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.004390 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.674057 B = 6377.188676 C = 6927.712061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 C -0.128 4.128 4 C 0.052 3.948 5 H 0.097 0.903 6 N -0.658 5.658 7 C 0.055 3.945 8 C -0.152 4.152 9 C -0.106 4.106 10 C -0.151 4.151 11 H 0.101 0.899 12 C 0.084 3.916 13 H 0.072 0.928 14 N -0.669 5.669 15 C 0.037 3.963 16 C 0.232 3.768 17 H 0.062 0.938 18 O -0.565 6.565 19 C -0.573 4.573 20 H 0.054 0.946 21 C 0.080 3.920 22 N -0.858 5.858 23 Si 0.888 3.112 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.338 0.662 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.344 0.656 41 H 0.062 0.938 42 H 0.015 0.985 43 H 0.340 0.660 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 -1.768 18.221 18.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.185 4.185 4 C -0.059 4.059 5 H 0.115 0.885 6 N -0.285 5.285 7 C -0.074 4.074 8 C -0.191 4.191 9 C -0.144 4.144 10 C -0.172 4.172 11 H 0.119 0.881 12 C -0.028 4.028 13 H 0.089 0.911 14 N -0.301 5.301 15 C -0.092 4.092 16 C 0.175 3.825 17 H 0.080 0.920 18 O -0.367 6.367 19 C -0.611 4.611 20 H 0.072 0.928 21 C -0.126 4.126 22 N -0.494 5.494 23 Si 0.716 3.284 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.164 0.836 41 H 0.080 0.920 42 H 0.033 0.967 43 H 0.183 0.817 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.865 -1.426 18.712 18.858 hybrid contribution -0.514 -1.424 -1.748 2.312 sum -2.379 -2.850 16.964 17.365 Atomic orbital electron populations 1.21756 0.94294 1.01638 1.01753 1.21905 0.94866 0.95444 0.94813 1.21593 1.01826 0.93750 1.01379 1.22807 0.97007 0.98953 0.87177 0.88522 1.61248 1.31219 1.05539 1.30501 1.22047 0.94115 0.94188 0.97092 1.22139 0.98988 1.01750 0.96207 1.21413 0.99886 0.97490 0.95619 1.23292 0.96523 0.99094 0.98270 0.88127 1.22615 0.94830 0.96061 0.89265 0.91071 1.60658 1.56310 1.11602 1.01522 1.22862 0.98443 0.94847 0.93097 1.19408 0.89610 0.86151 0.87374 0.91990 1.86590 1.18804 1.37553 1.93727 1.21639 1.50295 0.95306 0.93892 0.92802 1.25028 0.93916 0.94911 0.98775 1.70086 1.43531 1.14761 1.21024 0.86685 0.77869 0.81715 0.82164 1.20575 1.21084 1.19875 0.92361 0.92432 0.92891 0.91017 0.92121 0.92489 0.84468 0.91089 0.91413 0.91789 0.92298 0.92308 0.91774 0.83640 0.91974 0.96693 0.81676 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.27 37.15 0.34 -1.19 16 2 C -0.07 -0.82 1.27 -160.87 -0.20 -1.03 16 3 C -0.13 -1.50 7.77 37.16 0.29 -1.21 16 4 C 0.05 0.59 3.02 -71.85 -0.22 0.38 16 5 H 0.10 1.16 7.94 -51.93 -0.41 0.75 16 6 N -0.66 -6.92 7.17 -110.76 -0.79 -7.72 16 7 C 0.05 0.52 6.40 -3.44 -0.02 0.49 16 8 C -0.15 -1.50 5.92 -26.45 -0.16 -1.65 16 9 C -0.11 -1.29 6.14 -26.79 -0.16 -1.45 16 10 C -0.15 -1.94 2.71 -97.75 -0.27 -2.20 16 11 H 0.10 1.40 6.02 -51.93 -0.31 1.09 16 12 C 0.08 1.19 3.36 -71.57 -0.24 0.95 16 13 H 0.07 1.06 7.81 -51.93 -0.41 0.65 16 14 N -0.67 -11.67 6.04 -110.87 -0.67 -12.34 16 15 C 0.04 0.75 5.17 -3.82 -0.02 0.73 16 16 C 0.23 5.88 3.10 -27.88 -0.09 5.79 16 17 H 0.06 1.78 8.14 -51.92 -0.42 1.35 16 18 O -0.56 -14.28 12.07 -35.23 -0.43 -14.70 16 19 C -0.57 -15.80 8.76 -34.44 -0.30 -16.10 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 21 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 22 N -0.86 -25.55 12.84 55.43 0.71 -24.84 16 23 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.05 0.58 8.03 -51.93 -0.42 0.17 16 30 H 0.07 0.92 6.04 -51.93 -0.31 0.61 16 31 H 0.06 0.72 8.04 -51.93 -0.42 0.31 16 32 H 0.06 0.60 7.80 -51.93 -0.41 0.19 16 33 H 0.34 3.43 7.78 -39.29 -0.31 3.12 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.34 6.10 7.60 -39.29 -0.30 5.80 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.34 7.65 9.04 45.56 0.41 8.06 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -29.21 338.81 -9.29 -38.51 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -7.06 Total: 14.11 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.14 Total: -14.35 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.75 Total: -44.89 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.43 Total: -14.70 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.21 -9.29 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.066 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds