Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 113.18364 * 2 1 4 4 C 1.50192 * 114.06807 * 132.61197 * 2 1 3 5 5 H 1.09004 * 112.46868 * 38.21650 * 4 2 1 6 6 N 1.45220 * 126.15688 * 254.87345 * 4 2 1 7 7 C 1.48190 * 106.96822 * 198.28334 * 6 4 2 8 8 C 1.52353 * 112.68133 * 58.34900 * 7 6 4 9 9 C 1.54168 * 112.36053 * 307.95426 * 8 7 6 10 10 C 1.51686 * 105.69919 * 53.82838 * 9 8 7 11 11 H 1.09001 * 112.02508 * 60.75279 * 10 9 8 12 12 C 1.49427 * 123.68260 * 202.75725 * 10 9 8 13 13 H 1.09004 * 115.30640 * 27.94382 * 12 10 9 14 14 N 1.46898 * 113.54095 * 255.02314 * 12 10 9 15 15 C 1.46897 * 110.99801 * 111.54938 * 14 12 10 16 16 C 1.53004 * 109.47146 * 180.02562 * 15 14 12 17 17 H 1.09010 * 109.46667 * 60.00158 * 16 15 14 18 18 O 1.42902 * 109.47068 * 300.00671 * 16 15 14 19 19 C 1.50694 * 109.47446 * 179.97438 * 16 15 14 20 20 H 1.07998 * 120.00269 * 0.02562 * 19 16 15 21 21 C 1.37876 * 120.00268 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99658 * 0.02562 * 21 19 16 23 23 Si 1.86798 * 120.00360 * 180.02562 * 21 19 16 24 24 H 1.48505 * 109.46712 * 90.00245 * 23 21 19 25 25 H 1.48502 * 109.47440 * 210.00319 * 23 21 19 26 26 H 1.48497 * 109.46923 * 330.00801 * 23 21 19 27 27 H 1.09003 * 109.47194 * 287.39217 * 1 2 3 28 28 H 1.09003 * 109.46831 * 47.38200 * 1 2 3 29 29 H 1.08993 * 109.47355 * 167.38500 * 1 2 3 30 30 H 1.09006 * 109.47096 * 199.13846 * 3 2 1 31 31 H 1.09001 * 109.46936 * 319.13389 * 3 2 1 32 32 H 1.08996 * 109.47689 * 79.13369 * 3 2 1 33 33 H 1.00906 * 110.99554 * 319.50606 * 6 4 2 34 34 H 1.09005 * 108.83804 * 179.17147 * 7 6 4 35 35 H 1.08999 * 108.84246 * 297.51725 * 7 6 4 36 36 H 1.09006 * 108.90293 * 187.21465 * 8 7 6 37 37 H 1.08994 * 108.83211 * 68.65062 * 8 7 6 38 38 H 1.08994 * 110.19580 * 294.78357 * 9 8 7 39 39 H 1.08992 * 110.30461 * 172.93153 * 9 8 7 40 40 H 1.00898 * 111.00118 * 235.50903 * 14 12 10 41 41 H 1.08995 * 109.47578 * 300.00152 * 15 14 12 42 42 H 1.09002 * 109.47112 * 60.00825 * 15 14 12 43 43 H 0.96706 * 113.99926 * 299.99458 * 18 16 15 44 44 H 0.97001 * 119.99563 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1323 1.4065 0.0000 4 6 2.1425 -0.9284 1.0092 5 1 1.5897 -1.8631 1.1048 6 7 2.7712 -0.5406 2.2595 7 6 3.6044 -1.6850 2.6978 8 6 4.6580 -2.0732 1.6680 9 6 4.0548 -2.2943 0.2666 10 6 3.2827 -1.0282 -0.0524 11 1 3.9271 -0.1492 -0.0673 12 6 2.1647 -0.9664 -1.0419 13 1 1.6127 -1.8961 -1.1799 14 7 2.5370 -0.3216 -2.3082 15 6 2.5586 -1.2950 -3.4082 16 6 2.9502 -0.5879 -4.7073 17 1 3.9395 -0.1440 -4.5954 18 8 1.9981 0.4376 -4.9972 19 6 2.9730 -1.5865 -5.8357 20 1 2.7318 -2.6219 -5.6454 21 6 3.3006 -1.1782 -7.1112 22 7 3.5938 0.0828 -7.3430 23 14 3.3282 -2.4159 -8.5100 24 1 1.9859 -2.4781 -9.1423 25 1 4.3327 -1.9983 -9.5209 26 1 3.6876 -3.7552 -7.9788 27 1 -0.3634 0.3072 0.9807 28 1 -0.3633 0.6959 -0.7563 29 1 -0.3634 -1.0028 -0.2244 30 1 3.1678 1.3582 -0.3369 31 1 1.5609 2.0464 -0.6724 32 1 2.0973 1.8168 1.0092 33 1 3.3318 0.2899 2.1399 34 1 4.1039 -1.4202 3.6298 35 1 2.9568 -2.5427 2.8795 36 1 5.1460 -2.9926 1.9915 37 1 5.4030 -1.2797 1.6107 38 1 3.3827 -3.1523 0.2773 39 1 4.8469 -2.4467 -0.4664 40 1 1.9185 0.4475 -2.5179 41 1 3.2851 -2.0769 -3.1873 42 1 1.5694 -1.7391 -3.5198 43 1 1.0937 0.1142 -5.1098 44 1 3.8246 0.3699 -8.2403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576392519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = -41.070318 kcal Electronic energy + Delta-G solvation = -21758.992422 eV Core-core repulsion = 18710.914983 eV Total energy + Delta-G solvation = -3048.077439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.53544 -38.29845 -36.97185 -34.60050 -34.20146 -32.77576 -30.88202 -29.85035 -28.48563 -26.94499 -25.70654 -23.78262 -22.46172 -21.87015 -21.19685 -19.60806 -19.02101 -17.09067 -16.80521 -16.64778 -16.38064 -15.99114 -15.71290 -15.48806 -14.89784 -14.65547 -14.56454 -14.25801 -13.93541 -13.92497 -13.28630 -13.15544 -13.01111 -12.92081 -12.83666 -12.79846 -12.61657 -12.51375 -12.34277 -12.06780 -11.90247 -11.62617 -11.47215 -11.24372 -11.04635 -10.91232 -10.72181 -10.14929 -9.18698 -8.96883 -8.14524 -6.40796 1.39187 1.39970 1.50878 2.37614 2.94076 3.11165 3.34089 3.43988 3.69754 3.83999 3.96061 4.05932 4.21838 4.27770 4.30657 4.36676 4.45590 4.52463 4.57310 4.62031 4.64724 4.79771 4.84465 4.91957 4.99557 5.01769 5.07651 5.11499 5.12910 5.14427 5.15507 5.25189 5.35059 5.46369 5.59683 5.61814 5.74711 6.00238 6.03514 6.30745 6.50278 6.60091 6.74221 7.32220 7.53914 8.90001 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.004390 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.674057 B = 6377.188676 C = 6927.712061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.124 4.124 4 C 0.070 3.930 5 H 0.097 0.903 6 N -0.658 5.658 7 C 0.057 3.943 8 C -0.144 4.144 9 C -0.108 4.108 10 C -0.154 4.154 11 H 0.090 0.910 12 C 0.072 3.928 13 H 0.069 0.931 14 N -0.672 5.672 15 C 0.059 3.941 16 C 0.235 3.765 17 H 0.020 0.980 18 O -0.576 6.576 19 C -0.589 4.589 20 H 0.057 0.943 21 C 0.027 3.973 22 N -0.899 5.899 23 Si 0.960 3.040 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.266 1.266 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.341 0.659 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.043 0.957 40 H 0.342 0.658 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.353 0.647 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 -2.725 19.568 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.061 4.061 3 C -0.181 4.181 4 C -0.042 4.042 5 H 0.115 0.885 6 N -0.285 5.285 7 C -0.072 4.072 8 C -0.184 4.184 9 C -0.146 4.146 10 C -0.175 4.175 11 H 0.108 0.892 12 C -0.038 4.038 13 H 0.087 0.913 14 N -0.304 5.304 15 C -0.071 4.071 16 C 0.177 3.823 17 H 0.037 0.963 18 O -0.379 6.379 19 C -0.627 4.627 20 H 0.075 0.925 21 C -0.176 4.176 22 N -0.536 5.536 23 Si 0.784 3.216 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.190 1.190 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.161 0.839 41 H 0.073 0.927 42 H 0.039 0.961 43 H 0.197 0.803 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.610 -2.394 20.083 20.393 hybrid contribution -0.274 -1.098 -2.124 2.407 sum -2.883 -3.492 17.959 18.521 Atomic orbital electron populations 1.21741 0.93362 1.01758 1.02360 1.21832 0.95503 0.95109 0.93657 1.21553 1.00765 0.93630 1.02198 1.22639 0.95843 0.98593 0.87134 0.88500 1.61266 1.31676 1.06160 1.29442 1.22099 0.93887 0.93862 0.97399 1.22084 0.99066 1.02367 0.94835 1.21429 0.99298 0.97180 0.96710 1.23240 0.96776 0.99059 0.98462 0.89202 1.22778 0.96362 0.96581 0.88091 0.91323 1.60605 1.56857 1.11075 1.01814 1.22409 0.98207 0.94526 0.91952 1.19182 0.88052 0.85609 0.89413 0.96258 1.86521 1.19617 1.37809 1.93988 1.22031 1.49962 0.95833 0.94877 0.92474 1.25897 0.93369 0.96748 1.01577 1.70225 1.44773 1.16901 1.21699 0.85557 0.78132 0.79248 0.78619 1.19652 1.20827 1.19047 0.91210 0.92661 0.92741 0.92462 0.92525 0.90840 0.84107 0.89291 0.91092 0.90514 0.92500 0.92155 0.93776 0.83902 0.92727 0.96113 0.80260 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.27 71.98 0.67 -2.11 16 2 C -0.06 -1.35 1.27 -56.30 -0.07 -1.42 16 3 C -0.12 -2.79 7.77 71.98 0.56 -2.23 16 4 C 0.07 1.47 3.02 43.14 0.13 1.60 16 5 H 0.10 2.10 7.94 -2.38 -0.02 2.09 16 6 N -0.66 -12.28 7.17 -504.34 -3.61 -15.90 16 7 C 0.06 0.91 6.40 85.84 0.55 1.46 16 8 C -0.14 -2.60 5.92 30.78 0.18 -2.42 16 9 C -0.11 -2.56 6.14 30.56 0.19 -2.37 16 10 C -0.15 -3.88 2.71 -15.42 -0.04 -3.92 16 11 H 0.09 2.49 6.02 -2.39 -0.01 2.47 16 12 C 0.07 2.03 3.36 42.42 0.14 2.17 16 13 H 0.07 1.99 7.81 -2.38 -0.02 1.97 16 14 N -0.67 -23.74 6.04 -504.67 -3.05 -26.79 16 15 C 0.06 2.45 5.17 86.31 0.45 2.90 16 16 C 0.24 12.23 3.10 29.85 0.09 12.33 16 17 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 18 O -0.58 -29.68 12.07 -148.98 -1.80 -31.48 16 19 C -0.59 -32.81 8.76 25.60 0.22 -32.58 16 20 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 21 C 0.03 1.50 5.40 84.65 0.46 1.96 16 22 N -0.90 -54.41 12.84 21.45 0.28 -54.14 16 23 Si 0.96 43.65 29.54 68.60 2.03 45.68 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.16 8.07 -2.39 -0.02 1.14 16 29 H 0.05 1.10 8.03 -2.39 -0.02 1.08 16 30 H 0.06 1.46 6.04 -2.38 -0.01 1.44 16 31 H 0.06 1.31 8.04 -2.39 -0.02 1.29 16 32 H 0.07 1.40 7.80 -2.39 -0.02 1.38 16 33 H 0.34 6.16 7.78 -89.69 -0.70 5.46 16 34 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 39 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.34 12.25 7.60 -89.70 -0.68 11.56 16 41 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 43 H 0.35 16.00 9.04 -74.05 -0.67 15.33 16 44 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -62.63 338.81 -3.69 -66.32 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -1.06 Total: 40.94 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 3.52 Total: -24.64 kcal Atomic # 7 Polarization: -90.43 SS G_CDS: -6.39 Total: -96.82 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.80 Total: -31.48 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -62.63 -3.69 -66.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.250 kcal (2) G-P(sol) polarization free energy of solvation -62.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds