Wall clock time and date at job start Mon Mar 30 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 112.88019 * 2 1 4 4 C 1.54130 * 113.65229 * 228.56880 * 2 1 3 5 5 H 1.08998 * 112.99054 * 106.04814 * 4 2 1 6 6 N 1.45790 * 112.42917 * 337.54613 * 4 2 1 7 7 C 1.46351 * 113.31909 * 221.85042 * 6 4 2 8 8 C 1.53147 * 108.98211 * 59.14781 * 7 6 4 9 9 C 1.52723 * 108.68449 * 292.74772 * 8 7 6 10 10 C 1.51070 * 110.78391 * 54.80007 * 9 8 7 11 11 H 1.09004 * 110.67708 * 192.63667 * 10 9 8 12 12 C 1.53501 * 114.67223 * 64.33430 * 10 9 8 13 13 H 1.09006 * 113.78473 * 100.48494 * 12 10 9 14 14 N 1.46894 * 113.70050 * 329.33041 * 12 10 9 15 15 C 1.46898 * 111.00104 * 108.76623 * 14 12 10 16 16 C 1.53001 * 109.47278 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47223 * 59.99905 * 16 15 14 18 18 O 1.42903 * 109.46729 * 300.00164 * 16 15 14 19 19 C 1.50693 * 109.47504 * 179.97438 * 16 15 14 20 20 H 1.08006 * 120.00172 * 0.02562 * 19 16 15 21 21 C 1.37874 * 120.00493 * 179.97438 * 19 16 15 22 22 N 1.31515 * 120.00064 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00473 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.46904 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47547 * 119.99613 * 23 21 19 26 26 H 1.48493 * 109.47387 * 240.00173 * 23 21 19 27 27 H 1.09004 * 109.46961 * 286.59052 * 1 2 3 28 28 H 1.08993 * 109.47095 * 46.58741 * 1 2 3 29 29 H 1.08997 * 109.47202 * 166.59241 * 1 2 3 30 30 H 1.09000 * 109.47073 * 171.80520 * 3 2 1 31 31 H 1.09001 * 109.46876 * 291.80414 * 3 2 1 32 32 H 1.08999 * 109.46841 * 51.80130 * 3 2 1 33 33 H 1.00901 * 111.00504 * 96.15604 * 6 4 2 34 34 H 1.09002 * 109.55004 * 178.99541 * 7 6 4 35 35 H 1.08993 * 109.55238 * 299.19871 * 7 6 4 36 36 H 1.09003 * 109.60130 * 52.50760 * 8 7 6 37 37 H 1.08999 * 109.60582 * 172.82663 * 8 7 6 38 38 H 1.09002 * 109.16127 * 175.00032 * 9 8 7 39 39 H 1.08996 * 109.15966 * 294.22975 * 9 8 7 40 40 H 1.00900 * 111.00503 * 232.72231 * 14 12 10 41 41 H 1.09001 * 109.47071 * 60.00228 * 15 14 12 42 42 H 1.09002 * 109.47485 * 300.00079 * 15 14 12 43 43 H 0.96693 * 113.99894 * 299.99201 * 18 16 15 44 44 H 0.96995 * 120.00598 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1249 1.4096 0.0000 4 6 2.1483 -0.9342 -1.0585 5 1 2.5732 -0.3957 -1.9056 6 7 1.2307 -1.9879 -1.4746 7 6 1.8743 -3.2948 -1.6144 8 6 2.4917 -3.6924 -0.2704 9 6 3.6470 -2.7422 0.0374 10 6 3.1854 -1.3045 -0.0084 11 1 4.0386 -0.6261 -0.0112 12 6 2.1473 -0.9305 1.0588 13 1 2.5675 -0.4022 1.9147 14 7 1.2726 -2.0447 1.4476 15 6 1.5878 -2.5129 2.8038 16 6 0.6587 -3.6714 3.1723 17 1 0.7982 -4.4883 2.4642 18 8 -0.6986 -3.2268 3.1252 19 6 0.9825 -4.1522 4.5632 20 1 1.7717 -3.6786 5.1283 21 6 0.2705 -5.1960 5.1151 22 7 -0.6916 -5.7718 4.4277 23 14 0.6713 -5.7916 6.8396 24 1 1.7855 -4.9827 7.3961 25 1 -0.5265 -5.6447 7.7050 26 1 1.0734 -7.2201 6.7890 27 1 -0.3633 0.2934 0.9849 28 1 -0.3633 0.7062 -0.7465 29 1 -0.3633 -0.9996 -0.2383 30 1 3.2033 1.3489 0.1465 31 1 1.9144 1.8928 -0.9542 32 1 1.6806 1.9914 0.8076 33 1 0.7454 -1.7315 -2.3213 34 1 1.1324 -4.0372 -1.9088 35 1 2.6545 -3.2379 -2.3733 36 1 1.7385 -3.6186 0.5141 37 1 2.8621 -4.7160 -0.3266 38 1 4.0351 -2.9613 1.0322 39 1 4.4389 -2.8923 -0.6963 40 1 0.3005 -1.7849 1.3716 41 1 1.4487 -1.6959 3.5118 42 1 2.6230 -2.8524 2.8396 43 1 -0.8954 -2.4995 3.7312 44 1 -1.1922 -6.5064 4.8157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576392520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:02 Heat of formation + Delta-G solvation = -23.950134 kcal Electronic energy + Delta-G solvation = -22544.349151 eV Core-core repulsion = 19497.014099 eV Total energy + Delta-G solvation = -3047.335052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87172 -36.18526 -35.15421 -33.25472 -32.08334 -31.75132 -29.66448 -28.06556 -27.05280 -25.23113 -23.84389 -23.08887 -21.50221 -20.37616 -19.03352 -17.38754 -16.87123 -16.53756 -15.71981 -14.90911 -14.54169 -14.29456 -14.12537 -13.77479 -13.65837 -13.47709 -13.25776 -12.69117 -12.59394 -12.49435 -12.15619 -11.96391 -11.95175 -11.31663 -11.05424 -10.96972 -10.83202 -10.74475 -10.72216 -10.36019 -10.23556 -10.07159 -10.02202 -9.78784 -9.48204 -8.92011 -8.53069 -8.10778 -7.93146 -7.26742 -5.96159 -4.13899 3.29030 3.37378 3.40547 4.26830 4.39627 4.57033 4.75277 4.86810 5.07282 5.30686 5.33615 5.35760 5.45388 5.55343 5.65478 5.71061 5.73664 5.86783 5.89791 5.93218 5.98946 6.09603 6.16411 6.18750 6.22215 6.26617 6.37982 6.40397 6.53596 6.58057 6.68506 6.75862 6.81007 6.98860 7.40646 7.57130 7.76093 7.77819 7.82594 7.98823 8.15328 8.34091 8.90155 9.44122 9.63543 11.07915 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.005389 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.640412 B = 5194.439001 C = 5442.555249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 C -0.126 4.126 4 C 0.098 3.902 5 H 0.034 0.966 6 N -0.662 5.662 7 C 0.079 3.921 8 C -0.143 4.143 9 C -0.089 4.089 10 C -0.101 4.101 11 H 0.075 0.925 12 C 0.085 3.915 13 H 0.046 0.954 14 N -0.642 5.642 15 C 0.032 3.968 16 C 0.234 3.766 17 H 0.063 0.937 18 O -0.564 6.564 19 C -0.571 4.571 20 H 0.054 0.946 21 C 0.080 3.920 22 N -0.857 5.857 23 Si 0.887 3.113 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.335 0.665 34 H 0.067 0.933 35 H 0.009 0.991 36 H 0.142 0.858 37 H 0.044 0.956 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.351 0.649 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.340 0.660 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 10.949 -11.183 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.094 4.094 3 C -0.184 4.184 4 C -0.013 4.013 5 H 0.052 0.948 6 N -0.292 5.292 7 C -0.049 4.049 8 C -0.181 4.181 9 C -0.127 4.127 10 C -0.120 4.120 11 H 0.094 0.906 12 C -0.026 4.026 13 H 0.064 0.936 14 N -0.276 5.276 15 C -0.097 4.097 16 C 0.176 3.824 17 H 0.081 0.919 18 O -0.365 6.365 19 C -0.610 4.610 20 H 0.072 0.928 21 C -0.126 4.126 22 N -0.493 5.493 23 Si 0.714 3.286 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.159 0.841 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.055 0.945 40 H 0.174 0.826 41 H 0.031 0.969 42 H 0.080 0.920 43 H 0.183 0.817 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.458 9.705 -11.319 15.878 hybrid contribution 0.688 0.963 1.111 1.623 sum 6.146 10.668 -10.209 15.994 Atomic orbital electron populations 1.21599 0.93695 1.03706 1.00367 1.22283 0.96290 0.93385 0.97447 1.21569 1.00314 0.95075 1.01447 1.21783 0.92707 0.92319 0.94454 0.94816 1.58687 1.30767 1.01753 1.37977 1.21619 0.96239 0.90027 0.97031 1.22158 1.00181 0.95930 0.99786 1.20681 0.97429 0.94148 1.00457 1.21926 0.95696 0.97504 0.96916 0.90639 1.22558 0.94704 0.91004 0.94348 0.93619 1.60357 1.08535 1.33203 1.25493 1.22957 1.01333 0.98628 0.86781 1.19404 0.77795 0.89758 0.95438 0.91897 1.86596 1.31315 1.54742 1.63884 1.21682 1.19710 1.18151 1.01419 0.92823 1.25017 0.94495 0.95772 0.97329 1.70091 1.20280 1.22400 1.36551 0.86657 0.78265 0.78697 0.84975 1.19827 1.20970 1.20909 0.93572 0.93748 0.89024 0.92780 0.92711 0.92493 0.84740 0.91423 0.97313 0.84092 0.93735 0.92278 0.94522 0.82608 0.96894 0.92016 0.81745 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 7.72 37.16 0.29 -1.45 16 2 C -0.09 -1.16 1.36 -153.47 -0.21 -1.37 16 3 C -0.13 -1.34 9.07 37.16 0.34 -1.00 16 4 C 0.10 1.25 3.98 -68.15 -0.27 0.98 16 5 H 0.03 0.41 8.09 -51.93 -0.42 -0.01 16 6 N -0.66 -8.66 4.25 -107.65 -0.46 -9.11 16 7 C 0.08 1.10 6.56 -4.05 -0.03 1.08 16 8 C -0.14 -2.30 5.70 -26.80 -0.15 -2.45 16 9 C -0.09 -1.33 5.53 -27.84 -0.15 -1.49 16 10 C -0.10 -1.39 3.51 -91.77 -0.32 -1.71 16 11 H 0.08 0.95 7.46 -51.93 -0.39 0.56 16 12 C 0.08 1.26 3.58 -67.00 -0.24 1.02 16 13 H 0.05 0.71 7.82 -51.93 -0.41 0.31 16 14 N -0.64 -11.07 2.42 -105.97 -0.26 -11.33 16 15 C 0.03 0.65 4.81 -3.82 -0.02 0.63 16 16 C 0.23 5.81 3.05 -27.89 -0.08 5.72 16 17 H 0.06 1.76 7.89 -51.93 -0.41 1.35 16 18 O -0.56 -14.13 12.07 -35.23 -0.43 -14.56 16 19 C -0.57 -15.62 8.76 -34.44 -0.30 -15.92 16 20 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 21 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 22 N -0.86 -25.37 12.84 55.43 0.71 -24.66 16 23 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 1.32 5.81 -51.93 -0.30 1.01 16 30 H 0.05 0.55 7.21 -51.93 -0.37 0.18 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.33 3.77 8.89 -39.29 -0.35 3.42 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.12 8.13 -51.93 -0.42 -0.31 16 36 H 0.14 2.69 4.45 -51.93 -0.23 2.46 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.95 7.75 -51.93 -0.40 0.54 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.35 6.33 5.57 -39.29 -0.22 6.11 16 41 H 0.01 0.26 8.13 -51.93 -0.42 -0.16 16 42 H 0.06 1.28 7.75 -51.93 -0.40 0.87 16 43 H 0.34 7.64 9.04 45.56 0.41 8.06 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -28.70 328.44 -8.58 -37.28 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -6.83 Total: 15.01 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.25 Total: -13.81 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.00 Total: -45.10 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.43 Total: -14.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.70 -8.58 -37.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.332 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds