Wall clock time and date at job start Mon Mar 30 2020 01:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 112.88019 * 2 1 4 4 C 1.54130 * 113.65229 * 228.56880 * 2 1 3 5 5 H 1.08998 * 112.99054 * 106.04814 * 4 2 1 6 6 N 1.45790 * 112.42917 * 337.54613 * 4 2 1 7 7 C 1.46351 * 113.31909 * 221.85042 * 6 4 2 8 8 C 1.53147 * 108.98211 * 59.14781 * 7 6 4 9 9 C 1.52723 * 108.68449 * 292.74772 * 8 7 6 10 10 C 1.51070 * 110.78391 * 54.80007 * 9 8 7 11 11 H 1.09004 * 110.67708 * 192.63667 * 10 9 8 12 12 C 1.53501 * 114.67223 * 64.33430 * 10 9 8 13 13 H 1.09006 * 113.78473 * 100.48494 * 12 10 9 14 14 N 1.46894 * 113.70050 * 329.33041 * 12 10 9 15 15 C 1.46898 * 111.00104 * 108.76623 * 14 12 10 16 16 C 1.53001 * 109.47278 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47223 * 59.99905 * 16 15 14 18 18 O 1.42903 * 109.46729 * 300.00164 * 16 15 14 19 19 C 1.50693 * 109.47504 * 179.97438 * 16 15 14 20 20 H 1.08006 * 120.00172 * 0.02562 * 19 16 15 21 21 C 1.37874 * 120.00493 * 179.97438 * 19 16 15 22 22 N 1.31515 * 120.00064 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00473 * 180.02562 * 21 19 16 24 24 H 1.48502 * 109.46904 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47547 * 119.99613 * 23 21 19 26 26 H 1.48493 * 109.47387 * 240.00173 * 23 21 19 27 27 H 1.09004 * 109.46961 * 286.59052 * 1 2 3 28 28 H 1.08993 * 109.47095 * 46.58741 * 1 2 3 29 29 H 1.08997 * 109.47202 * 166.59241 * 1 2 3 30 30 H 1.09000 * 109.47073 * 171.80520 * 3 2 1 31 31 H 1.09001 * 109.46876 * 291.80414 * 3 2 1 32 32 H 1.08999 * 109.46841 * 51.80130 * 3 2 1 33 33 H 1.00901 * 111.00504 * 96.15604 * 6 4 2 34 34 H 1.09002 * 109.55004 * 178.99541 * 7 6 4 35 35 H 1.08993 * 109.55238 * 299.19871 * 7 6 4 36 36 H 1.09003 * 109.60130 * 52.50760 * 8 7 6 37 37 H 1.08999 * 109.60582 * 172.82663 * 8 7 6 38 38 H 1.09002 * 109.16127 * 175.00032 * 9 8 7 39 39 H 1.08996 * 109.15966 * 294.22975 * 9 8 7 40 40 H 1.00900 * 111.00503 * 232.72231 * 14 12 10 41 41 H 1.09001 * 109.47071 * 60.00228 * 15 14 12 42 42 H 1.09002 * 109.47485 * 300.00079 * 15 14 12 43 43 H 0.96693 * 113.99894 * 299.99201 * 18 16 15 44 44 H 0.96995 * 120.00598 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1249 1.4096 0.0000 4 6 2.1483 -0.9342 -1.0585 5 1 2.5732 -0.3957 -1.9056 6 7 1.2307 -1.9879 -1.4746 7 6 1.8743 -3.2948 -1.6144 8 6 2.4917 -3.6924 -0.2704 9 6 3.6470 -2.7422 0.0374 10 6 3.1854 -1.3045 -0.0084 11 1 4.0386 -0.6261 -0.0112 12 6 2.1473 -0.9305 1.0588 13 1 2.5675 -0.4022 1.9147 14 7 1.2726 -2.0447 1.4476 15 6 1.5878 -2.5129 2.8038 16 6 0.6587 -3.6714 3.1723 17 1 0.7982 -4.4883 2.4642 18 8 -0.6986 -3.2268 3.1252 19 6 0.9825 -4.1522 4.5632 20 1 1.7717 -3.6786 5.1283 21 6 0.2705 -5.1960 5.1151 22 7 -0.6916 -5.7718 4.4277 23 14 0.6713 -5.7916 6.8396 24 1 1.7855 -4.9827 7.3961 25 1 -0.5265 -5.6447 7.7050 26 1 1.0734 -7.2201 6.7890 27 1 -0.3633 0.2934 0.9849 28 1 -0.3633 0.7062 -0.7465 29 1 -0.3633 -0.9996 -0.2383 30 1 3.2033 1.3489 0.1465 31 1 1.9144 1.8928 -0.9542 32 1 1.6806 1.9914 0.8076 33 1 0.7454 -1.7315 -2.3213 34 1 1.1324 -4.0372 -1.9088 35 1 2.6545 -3.2379 -2.3733 36 1 1.7385 -3.6186 0.5141 37 1 2.8621 -4.7160 -0.3266 38 1 4.0351 -2.9613 1.0322 39 1 4.4389 -2.8923 -0.6963 40 1 0.3005 -1.7849 1.3716 41 1 1.4487 -1.6959 3.5118 42 1 2.6230 -2.8524 2.8396 43 1 -0.8954 -2.4995 3.7312 44 1 -1.1922 -6.5064 4.8157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576392520.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:01 Heat of formation + Delta-G solvation = -43.410502 kcal Electronic energy + Delta-G solvation = -22545.193016 eV Core-core repulsion = 19497.014099 eV Total energy + Delta-G solvation = -3048.178917 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98611 -38.06558 -36.30330 -34.75052 -34.18652 -33.00744 -30.72823 -29.86532 -28.09861 -26.76329 -25.31048 -24.32059 -22.75585 -22.18946 -20.15112 -19.04198 -18.42020 -17.69777 -17.08790 -16.62796 -16.28705 -15.84521 -15.47148 -15.20144 -14.93108 -14.74245 -14.56819 -14.17721 -13.93560 -13.61595 -13.49276 -13.17609 -13.00860 -12.92434 -12.88349 -12.69472 -12.57632 -12.08650 -12.04225 -11.85908 -11.66698 -11.39665 -11.26121 -10.99887 -10.84101 -10.68528 -10.58647 -10.06383 -9.00436 -8.62181 -8.11010 -6.36389 1.39476 1.40944 1.52666 2.39754 3.14504 3.24006 3.35930 3.65664 3.76975 3.93080 4.18119 4.32894 4.34627 4.40996 4.47383 4.54433 4.59407 4.62816 4.65209 4.77810 4.82663 4.86133 4.88683 4.99367 5.07062 5.10267 5.15824 5.19896 5.25851 5.30904 5.35323 5.51884 5.64403 5.67561 5.75078 5.83034 6.09333 6.15046 6.39740 6.52095 6.72871 6.80984 6.83438 7.36309 7.59201 8.93360 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.005389 C = 0.005143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.640412 B = 5194.439001 C = 5442.555249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 C -0.123 4.123 4 C 0.102 3.898 5 H 0.053 0.947 6 N -0.671 5.671 7 C 0.087 3.913 8 C -0.147 4.147 9 C -0.086 4.086 10 C -0.100 4.100 11 H 0.095 0.905 12 C 0.070 3.930 13 H 0.040 0.960 14 N -0.637 5.637 15 C 0.056 3.944 16 C 0.239 3.761 17 H 0.024 0.976 18 O -0.575 6.575 19 C -0.586 4.586 20 H 0.054 0.946 21 C 0.027 3.973 22 N -0.897 5.897 23 Si 0.957 3.043 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.280 1.280 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.348 0.652 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.111 0.889 37 H 0.035 0.965 38 H 0.040 0.960 39 H 0.051 0.949 40 H 0.346 0.654 41 H 0.013 0.987 42 H 0.054 0.946 43 H 0.351 0.649 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 12.648 -11.747 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.083 4.083 3 C -0.180 4.180 4 C -0.009 4.009 5 H 0.071 0.929 6 N -0.303 5.303 7 C -0.042 4.042 8 C -0.185 4.185 9 C -0.124 4.124 10 C -0.120 4.120 11 H 0.113 0.887 12 C -0.040 4.040 13 H 0.058 0.942 14 N -0.269 5.269 15 C -0.074 4.074 16 C 0.182 3.818 17 H 0.042 0.958 18 O -0.378 6.378 19 C -0.624 4.624 20 H 0.073 0.927 21 C -0.175 4.175 22 N -0.534 5.534 23 Si 0.782 3.218 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.205 1.205 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.167 0.833 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.129 0.871 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.168 0.832 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.195 0.805 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.351 11.426 -11.893 17.673 hybrid contribution 0.402 0.433 1.258 1.390 sum 6.753 11.859 -10.634 17.301 Atomic orbital electron populations 1.21530 0.93939 1.03075 1.00419 1.22275 0.96054 0.94202 0.95762 1.21559 1.00536 0.93447 1.02493 1.21779 0.92154 0.92125 0.94816 0.92887 1.58608 1.31110 1.01567 1.39004 1.21477 0.96445 0.90512 0.95781 1.22086 1.00040 0.96073 1.00322 1.20635 0.97234 0.94784 0.99772 1.21993 0.96261 0.96935 0.96784 0.88722 1.22706 0.95267 0.91009 0.95038 0.94241 1.60328 1.08621 1.34791 1.23209 1.22483 0.99442 0.96853 0.88576 1.19155 0.78603 0.90467 0.93599 0.95834 1.86533 1.31592 1.55391 1.64303 1.22062 1.19546 1.18321 1.02491 0.92740 1.25856 0.94275 0.95905 1.01473 1.70225 1.21547 1.23114 1.38542 0.85550 0.78242 0.78123 0.79868 1.18981 1.20427 1.20529 0.94415 0.91906 0.90832 0.92149 0.90995 0.92384 0.83265 0.91699 0.95938 0.87135 0.94660 0.94166 0.93027 0.83173 0.96915 0.92744 0.80491 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 7.72 71.98 0.56 -2.60 16 2 C -0.08 -1.85 1.36 -51.51 -0.07 -1.92 16 3 C -0.12 -2.19 9.07 71.98 0.65 -1.53 16 4 C 0.10 2.33 3.98 45.23 0.18 2.51 16 5 H 0.05 1.06 8.09 -2.39 -0.02 1.05 16 6 N -0.67 -16.48 4.25 -494.48 -2.10 -18.58 16 7 C 0.09 2.32 6.56 86.46 0.57 2.89 16 8 C -0.15 -4.80 5.70 30.55 0.17 -4.62 16 9 C -0.09 -2.52 5.53 29.87 0.17 -2.35 16 10 C -0.10 -2.57 3.51 -11.54 -0.04 -2.61 16 11 H 0.09 2.10 7.46 -2.38 -0.02 2.08 16 12 C 0.07 2.02 3.58 45.38 0.16 2.18 16 13 H 0.04 1.19 7.82 -2.38 -0.02 1.17 16 14 N -0.64 -22.24 2.42 -489.17 -1.18 -23.43 16 15 C 0.06 2.33 4.81 86.30 0.41 2.75 16 16 C 0.24 12.33 3.05 29.85 0.09 12.42 16 17 H 0.02 1.40 7.89 -2.39 -0.02 1.38 16 18 O -0.57 -29.66 12.07 -148.98 -1.80 -31.45 16 19 C -0.59 -32.61 8.76 25.60 0.22 -32.39 16 20 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 21 C 0.03 1.55 5.40 84.65 0.46 2.01 16 22 N -0.90 -54.21 12.84 21.45 0.28 -53.94 16 23 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 27 H 0.04 0.95 8.09 -2.38 -0.02 0.93 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 2.05 5.81 -2.39 -0.01 2.04 16 30 H 0.06 1.01 7.21 -2.39 -0.02 1.00 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.35 7.07 8.89 -89.69 -0.80 6.27 16 34 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.02 0.55 8.13 -2.39 -0.02 0.53 16 36 H 0.11 4.39 4.45 -2.39 -0.01 4.38 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.04 1.30 7.75 -2.39 -0.02 1.28 16 39 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.35 12.67 5.57 -89.69 -0.50 12.17 16 41 H 0.01 0.52 8.13 -2.39 -0.02 0.50 16 42 H 0.05 2.32 7.75 -2.39 -0.02 2.30 16 43 H 0.35 16.09 9.04 -74.06 -0.67 15.42 16 44 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -62.18 328.44 -0.21 -62.39 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -0.97 Total: 42.32 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 3.53 Total: -23.27 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -3.01 Total: -95.94 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -1.80 Total: -31.45 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -62.18 -0.21 -62.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392520.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.980 kcal (2) G-P(sol) polarization free energy of solvation -62.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds