Wall clock time and date at job start Mon Mar 30 2020 01:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 112.87387 * 2 1 4 4 C 1.53876 * 113.64998 * 228.57184 * 2 1 3 5 5 H 1.09002 * 113.69000 * 156.47216 * 4 2 1 6 6 N 1.46892 * 113.69746 * 25.41215 * 4 2 1 7 7 C 1.46898 * 111.00391 * 154.99640 * 6 4 2 8 8 C 1.53000 * 109.47611 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.46939 * 59.99932 * 8 7 6 10 10 O 1.42905 * 109.46917 * 300.00019 * 8 7 6 11 11 C 1.50699 * 109.46905 * 180.02562 * 8 7 6 12 12 H 1.08001 * 120.00449 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99671 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99907 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99761 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.46935 * 60.00567 * 15 13 11 17 17 H 1.48508 * 109.46940 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47423 * 300.00163 * 15 13 11 19 19 C 1.52142 * 86.57926 * 271.01586 * 4 2 1 20 20 H 1.09002 * 112.36076 * 87.65313 * 19 4 2 21 21 C 1.51666 * 113.75947 * 215.25265 * 19 4 2 22 22 C 1.52728 * 111.06740 * 64.81271 * 21 19 4 23 23 C 1.54251 * 108.49536 * 54.83986 * 22 21 19 24 24 N 1.46350 * 108.38393 * 292.28870 * 23 22 21 25 25 C 1.45796 * 113.31956 * 59.74031 * 24 23 22 26 26 H 1.09005 * 112.37941 * 93.03766 * 25 24 23 27 27 H 1.08997 * 109.47536 * 288.69595 * 1 2 3 28 28 H 1.09000 * 109.46996 * 48.69413 * 1 2 3 29 29 H 1.09003 * 109.47284 * 168.68925 * 1 2 3 30 30 H 1.09000 * 109.47149 * 191.30070 * 3 2 1 31 31 H 1.09006 * 109.47354 * 311.30712 * 3 2 1 32 32 H 1.08999 * 109.47071 * 71.30381 * 3 2 1 33 33 H 1.00901 * 111.00051 * 278.94973 * 6 4 2 34 34 H 1.09000 * 109.47167 * 300.00792 * 7 6 4 35 35 H 1.09005 * 109.46603 * 59.99522 * 7 6 4 36 36 H 0.96698 * 114.00026 * 299.99984 * 10 8 7 37 37 H 0.97004 * 119.99895 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.16134 * 185.22911 * 21 19 4 39 39 H 1.09008 * 109.15600 * 304.40564 * 21 19 4 40 40 H 1.09002 * 109.59653 * 174.35650 * 22 21 19 41 41 H 1.09006 * 109.60261 * 294.83718 * 22 21 19 42 42 H 1.09000 * 109.35665 * 172.91299 * 23 22 21 43 43 H 1.09001 * 110.34303 * 52.24902 * 23 22 21 44 44 H 1.00898 * 111.00285 * 294.03810 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1247 1.4096 0.0000 4 6 2.1473 -0.9327 -1.0568 5 1 3.1613 -0.6564 -1.3460 6 7 1.2713 -1.1802 -2.2097 7 6 2.0549 -1.5411 -3.3986 8 6 1.1101 -1.7913 -4.5757 9 1 0.5362 -0.8874 -4.7794 10 8 0.2175 -2.8592 -4.2513 11 6 1.9141 -2.1622 -5.7951 12 1 2.9912 -2.2146 -5.7364 13 6 1.2745 -2.4356 -6.9856 14 7 -0.0372 -2.3723 -7.0570 15 14 2.2711 -2.8945 -8.4974 16 1 3.0534 -4.1258 -8.2194 17 1 1.3540 -3.1376 -9.6399 18 1 3.1982 -1.7847 -8.8349 19 6 2.0862 -2.0233 0.0021 20 1 1.1306 -2.5477 0.0028 21 6 3.2483 -2.9962 -0.0549 22 6 4.5674 -2.2952 0.2633 23 6 4.4294 -1.5889 1.6277 24 7 3.4718 -0.4914 1.4845 25 6 2.1482 -0.9319 1.0606 26 1 1.4829 -1.1179 1.9038 27 1 -0.3634 0.3294 0.9734 28 1 -0.3633 0.6783 -0.7720 29 1 -0.3634 -1.0077 -0.2016 30 1 3.1945 1.3527 -0.2014 31 1 1.6410 2.0082 -0.7720 32 1 1.9625 1.8724 0.9734 33 1 0.5873 -1.8911 -1.9980 34 1 2.7361 -0.7268 -3.6457 35 1 2.6285 -2.4453 -3.1949 36 1 0.6603 -3.6968 -4.0577 37 1 -0.4872 -2.5643 -7.8946 38 1 3.0831 -3.7938 0.6694 39 1 3.3046 -3.4279 -1.0543 40 1 5.3696 -3.0314 0.3143 41 1 4.7888 -1.5627 -0.5129 42 1 5.3985 -1.1906 1.9279 43 1 4.0715 -2.2892 2.3824 44 1 3.8298 0.2228 0.8682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576392521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:05 Heat of formation + Delta-G solvation = -38.732069 kcal Electronic energy + Delta-G solvation = -22005.523795 eV Core-core repulsion = 18957.547751 eV Total energy + Delta-G solvation = -3047.976045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.30250 -36.47251 -35.42896 -33.47234 -32.13108 -31.79437 -29.82705 -28.01439 -27.38142 -25.34654 -24.12173 -22.94295 -22.32990 -20.52421 -19.51974 -18.12481 -16.98886 -15.97012 -15.45366 -15.17760 -15.00010 -14.58082 -14.48187 -14.19059 -13.75226 -13.66451 -13.17416 -12.87869 -12.67169 -12.50522 -12.38350 -12.07977 -11.93369 -11.67947 -11.29984 -11.13746 -11.11477 -11.01940 -10.94017 -10.80135 -10.76776 -10.34814 -10.27291 -10.04913 -9.77500 -9.01303 -8.57605 -8.32713 -8.14360 -7.64654 -6.00733 -4.19232 3.27835 3.33398 3.34882 4.13923 4.35755 4.44046 4.54727 4.67655 4.72059 4.94203 4.99491 5.04280 5.20187 5.26317 5.38743 5.41496 5.56254 5.60477 5.72390 5.77563 5.82587 5.91080 5.95406 6.00126 6.05958 6.09765 6.11741 6.14333 6.17416 6.32147 6.37120 6.42642 6.48199 6.61302 6.88420 7.11578 7.33579 7.60361 7.75715 7.87195 8.01868 8.23651 8.84080 9.36955 9.57746 11.03451 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.004718 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.547696 B = 5932.691927 C = 6399.047739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.083 4.083 3 C -0.131 4.131 4 C 0.080 3.920 5 H 0.086 0.914 6 N -0.669 5.669 7 C 0.038 3.962 8 C 0.232 3.768 9 H 0.063 0.937 10 O -0.565 6.565 11 C -0.574 4.574 12 H 0.053 0.947 13 C 0.080 3.920 14 N -0.858 5.858 15 Si 0.889 3.111 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.159 4.159 20 H 0.090 0.910 21 C -0.107 4.107 22 C -0.158 4.158 23 C 0.064 3.936 24 N -0.679 5.679 25 C 0.086 3.914 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.344 0.656 34 H 0.061 0.939 35 H 0.014 0.986 36 H 0.340 0.660 37 H 0.261 0.739 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.238 2.227 16.817 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.188 4.188 4 C -0.032 4.032 5 H 0.104 0.896 6 N -0.299 5.299 7 C -0.091 4.091 8 C 0.175 3.825 9 H 0.081 0.919 10 O -0.367 6.367 11 C -0.612 4.612 12 H 0.071 0.929 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.716 3.284 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.202 1.202 19 C -0.181 4.181 20 H 0.108 0.892 21 C -0.145 4.145 22 C -0.197 4.197 23 C -0.065 4.065 24 N -0.310 5.310 25 C -0.025 4.025 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.079 0.921 35 H 0.032 0.968 36 H 0.183 0.817 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.395 3.354 17.051 18.195 hybrid contribution 1.549 -1.895 -1.660 2.957 sum 6.944 1.459 15.391 16.948 Atomic orbital electron populations 1.21340 0.92317 1.02425 1.00856 1.22379 0.96711 0.94397 0.94974 1.21617 0.99624 0.95816 1.01771 1.22946 0.96205 0.94555 0.89491 0.89608 1.60374 1.15971 1.50399 1.03126 1.22843 0.96905 0.97645 0.91719 1.19409 0.87315 0.87805 0.88001 0.91934 1.86591 1.37984 1.20482 1.91609 1.21593 0.93260 1.50760 0.95624 0.92895 1.25025 0.94698 0.94313 0.98558 1.70072 1.07358 1.45912 1.26001 0.86743 0.80065 0.79035 0.82544 1.20240 1.21149 1.20156 1.22916 0.99462 0.96358 0.99351 0.89182 1.21027 0.93988 0.97769 1.01706 1.22391 0.97791 1.00698 0.98815 1.22080 0.95508 0.93137 0.95814 1.59691 1.02437 1.13257 1.55658 1.22099 0.90681 0.94828 0.94869 0.89923 0.93376 0.91527 0.92580 0.93220 0.92046 0.92350 0.83565 0.92071 0.96762 0.81724 0.92938 0.92373 0.91924 0.91630 0.91973 0.90992 0.90917 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 8.40 37.16 0.31 -1.08 16 2 C -0.08 -1.02 1.32 -153.54 -0.20 -1.23 16 3 C -0.13 -1.49 8.34 37.16 0.31 -1.18 16 4 C 0.08 1.12 2.89 -67.70 -0.20 0.92 16 5 H 0.09 1.28 6.40 -51.93 -0.33 0.95 16 6 N -0.67 -11.59 5.78 -106.71 -0.62 -12.21 16 7 C 0.04 0.77 5.17 -3.82 -0.02 0.75 16 8 C 0.23 5.86 3.10 -27.88 -0.09 5.77 16 9 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 10 O -0.56 -14.26 12.06 -35.23 -0.43 -14.68 16 11 C -0.57 -15.77 8.76 -34.44 -0.30 -16.07 16 12 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 13 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 14 N -0.86 -25.48 12.84 55.43 0.71 -24.77 16 15 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.16 -1.98 3.17 -92.24 -0.29 -2.27 16 20 H 0.09 1.17 7.09 -51.93 -0.37 0.80 16 21 C -0.11 -1.28 5.64 -27.55 -0.16 -1.44 16 22 C -0.16 -1.67 5.92 -26.22 -0.16 -1.82 16 23 C 0.06 0.63 6.63 -3.47 -0.02 0.60 16 24 N -0.68 -7.32 6.48 -107.01 -0.69 -8.02 16 25 C 0.09 1.00 4.13 -68.15 -0.28 0.72 16 26 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.72 6.59 -51.93 -0.34 0.38 16 30 H 0.05 0.53 6.22 -51.93 -0.32 0.21 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.34 6.10 6.97 -39.29 -0.27 5.82 16 34 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.34 7.66 9.04 45.56 0.41 8.07 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.72 6.98 -51.93 -0.36 0.36 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.34 3.65 5.79 -39.29 -0.23 3.42 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -29.02 333.81 -9.05 -38.07 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -6.85 Total: 14.55 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -1.19 Total: -14.17 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: -0.60 Total: -44.99 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.43 Total: -14.68 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.02 -9.05 -38.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.662 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds