Wall clock time and date at job start Mon Mar 30 2020 01:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 112.87387 * 2 1 4 4 C 1.53876 * 113.64998 * 228.57184 * 2 1 3 5 5 H 1.09002 * 113.69000 * 156.47216 * 4 2 1 6 6 N 1.46892 * 113.69746 * 25.41215 * 4 2 1 7 7 C 1.46898 * 111.00391 * 154.99640 * 6 4 2 8 8 C 1.53000 * 109.47611 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.46939 * 59.99932 * 8 7 6 10 10 O 1.42905 * 109.46917 * 300.00019 * 8 7 6 11 11 C 1.50699 * 109.46905 * 180.02562 * 8 7 6 12 12 H 1.08001 * 120.00449 * 0.02562 * 11 8 7 13 13 C 1.37885 * 119.99671 * 179.97438 * 11 8 7 14 14 N 1.31514 * 119.99907 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 119.99761 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.46935 * 60.00567 * 15 13 11 17 17 H 1.48508 * 109.46940 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47423 * 300.00163 * 15 13 11 19 19 C 1.52142 * 86.57926 * 271.01586 * 4 2 1 20 20 H 1.09002 * 112.36076 * 87.65313 * 19 4 2 21 21 C 1.51666 * 113.75947 * 215.25265 * 19 4 2 22 22 C 1.52728 * 111.06740 * 64.81271 * 21 19 4 23 23 C 1.54251 * 108.49536 * 54.83986 * 22 21 19 24 24 N 1.46350 * 108.38393 * 292.28870 * 23 22 21 25 25 C 1.45796 * 113.31956 * 59.74031 * 24 23 22 26 26 H 1.09005 * 112.37941 * 93.03766 * 25 24 23 27 27 H 1.08997 * 109.47536 * 288.69595 * 1 2 3 28 28 H 1.09000 * 109.46996 * 48.69413 * 1 2 3 29 29 H 1.09003 * 109.47284 * 168.68925 * 1 2 3 30 30 H 1.09000 * 109.47149 * 191.30070 * 3 2 1 31 31 H 1.09006 * 109.47354 * 311.30712 * 3 2 1 32 32 H 1.08999 * 109.47071 * 71.30381 * 3 2 1 33 33 H 1.00901 * 111.00051 * 278.94973 * 6 4 2 34 34 H 1.09000 * 109.47167 * 300.00792 * 7 6 4 35 35 H 1.09005 * 109.46603 * 59.99522 * 7 6 4 36 36 H 0.96698 * 114.00026 * 299.99984 * 10 8 7 37 37 H 0.97004 * 119.99895 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.16134 * 185.22911 * 21 19 4 39 39 H 1.09008 * 109.15600 * 304.40564 * 21 19 4 40 40 H 1.09002 * 109.59653 * 174.35650 * 22 21 19 41 41 H 1.09006 * 109.60261 * 294.83718 * 22 21 19 42 42 H 1.09000 * 109.35665 * 172.91299 * 23 22 21 43 43 H 1.09001 * 110.34303 * 52.24902 * 23 22 21 44 44 H 1.00898 * 111.00285 * 294.03810 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1247 1.4096 0.0000 4 6 2.1473 -0.9327 -1.0568 5 1 3.1613 -0.6564 -1.3460 6 7 1.2713 -1.1802 -2.2097 7 6 2.0549 -1.5411 -3.3986 8 6 1.1101 -1.7913 -4.5757 9 1 0.5362 -0.8874 -4.7794 10 8 0.2175 -2.8592 -4.2513 11 6 1.9141 -2.1622 -5.7951 12 1 2.9912 -2.2146 -5.7364 13 6 1.2745 -2.4356 -6.9856 14 7 -0.0372 -2.3723 -7.0570 15 14 2.2711 -2.8945 -8.4974 16 1 3.0534 -4.1258 -8.2194 17 1 1.3540 -3.1376 -9.6399 18 1 3.1982 -1.7847 -8.8349 19 6 2.0862 -2.0233 0.0021 20 1 1.1306 -2.5477 0.0028 21 6 3.2483 -2.9962 -0.0549 22 6 4.5674 -2.2952 0.2633 23 6 4.4294 -1.5889 1.6277 24 7 3.4718 -0.4914 1.4845 25 6 2.1482 -0.9319 1.0606 26 1 1.4829 -1.1179 1.9038 27 1 -0.3634 0.3294 0.9734 28 1 -0.3633 0.6783 -0.7720 29 1 -0.3634 -1.0077 -0.2016 30 1 3.1945 1.3527 -0.2014 31 1 1.6410 2.0082 -0.7720 32 1 1.9625 1.8724 0.9734 33 1 0.5873 -1.8911 -1.9980 34 1 2.7361 -0.7268 -3.6457 35 1 2.6285 -2.4453 -3.1949 36 1 0.6603 -3.6968 -4.0577 37 1 -0.4872 -2.5643 -7.8946 38 1 3.0831 -3.7938 0.6694 39 1 3.3046 -3.4279 -1.0543 40 1 5.3696 -3.0314 0.3143 41 1 4.7888 -1.5627 -0.5129 42 1 5.3985 -1.1906 1.9279 43 1 4.0715 -2.2892 2.3824 44 1 3.8298 0.2228 0.8682 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576392521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:04 Heat of formation + Delta-G solvation = -60.485415 kcal Electronic energy + Delta-G solvation = -22006.467091 eV Core-core repulsion = 18957.547751 eV Total energy + Delta-G solvation = -3048.919341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.32503 -38.24779 -36.55253 -34.83659 -34.24246 -32.95361 -30.77948 -29.84142 -28.37413 -26.81018 -25.49492 -23.99491 -23.41177 -22.38931 -20.46540 -19.20708 -19.05240 -17.02372 -16.69491 -16.59159 -16.50118 -16.26598 -15.82371 -15.42720 -15.19953 -14.85187 -14.42843 -14.31893 -13.83873 -13.75527 -13.38324 -13.30992 -13.17430 -12.91557 -12.90082 -12.79694 -12.68136 -12.45968 -12.11848 -12.09963 -12.02200 -11.84271 -11.41104 -11.27389 -10.99483 -10.81296 -10.71342 -10.14962 -9.22572 -9.01152 -8.15079 -6.41509 1.38863 1.40567 1.48846 2.36996 3.10423 3.25121 3.31952 3.44925 3.63573 3.72719 3.91543 4.07428 4.09605 4.20672 4.25894 4.38621 4.48268 4.54204 4.56403 4.61756 4.64118 4.80214 4.89140 4.92056 4.95774 5.00306 5.05396 5.06652 5.10756 5.16140 5.21619 5.22854 5.38819 5.49315 5.57825 5.60492 5.73710 6.02045 6.22254 6.29989 6.49944 6.57365 6.72945 7.31006 7.51648 8.89231 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.004718 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.547696 B = 5932.691927 C = 6399.047739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.080 4.080 3 C -0.128 4.128 4 C 0.073 3.927 5 H 0.080 0.920 6 N -0.672 5.672 7 C 0.061 3.939 8 C 0.235 3.765 9 H 0.021 0.979 10 O -0.576 6.576 11 C -0.590 4.590 12 H 0.057 0.943 13 C 0.027 3.973 14 N -0.898 5.898 15 Si 0.960 3.040 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.153 4.153 20 H 0.084 0.916 21 C -0.107 4.107 22 C -0.154 4.154 23 C 0.067 3.933 24 N -0.679 5.679 25 C 0.099 3.901 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.342 0.658 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.352 0.648 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.814 2.013 18.081 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.081 4.081 3 C -0.186 4.186 4 C -0.038 4.038 5 H 0.098 0.902 6 N -0.302 5.302 7 C -0.068 4.068 8 C 0.177 3.823 9 H 0.039 0.961 10 O -0.380 6.380 11 C -0.628 4.628 12 H 0.075 0.925 13 C -0.176 4.176 14 N -0.535 5.535 15 Si 0.784 3.216 16 H -0.192 1.192 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.175 4.175 20 H 0.103 0.897 21 C -0.145 4.145 22 C -0.193 4.193 23 C -0.062 4.062 24 N -0.310 5.310 25 C -0.012 4.012 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.196 0.804 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.992 3.143 18.338 19.876 hybrid contribution 1.035 -1.823 -2.006 2.901 sum 8.027 1.321 16.332 18.246 Atomic orbital electron populations 1.21314 0.92500 1.01585 1.01350 1.22365 0.96580 0.94892 0.94277 1.21599 0.99852 0.94966 1.02152 1.23047 0.95489 0.96461 0.88766 0.90191 1.60334 1.16291 1.50104 1.03508 1.22379 0.95632 0.97500 0.91324 1.19196 0.87116 0.86257 0.89723 0.96130 1.86524 1.38537 1.21201 1.91691 1.21991 0.93666 1.50381 0.96730 0.92501 1.25896 0.95680 0.94143 1.01842 1.70215 1.09204 1.47236 1.26874 0.85617 0.78494 0.79069 0.78412 1.19201 1.20893 1.19380 1.22851 0.99530 0.96274 0.98867 0.89744 1.21022 0.94607 0.97990 1.00850 1.22366 0.97229 1.00659 0.99056 1.22137 0.96076 0.92839 0.95194 1.59730 1.02248 1.13651 1.55416 1.21982 0.91292 0.93545 0.94379 0.89430 0.91473 0.93166 0.93351 0.92516 0.93205 0.90985 0.83861 0.92589 0.96438 0.80386 0.92957 0.91362 0.93939 0.90467 0.93077 0.89239 0.90492 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 8.40 71.98 0.60 -2.06 16 2 C -0.08 -1.87 1.32 -51.55 -0.07 -1.94 16 3 C -0.13 -2.74 8.34 71.98 0.60 -2.14 16 4 C 0.07 2.02 2.89 44.93 0.13 2.15 16 5 H 0.08 2.33 6.40 -2.39 -0.02 2.32 16 6 N -0.67 -23.62 5.78 -491.52 -2.84 -26.46 16 7 C 0.06 2.53 5.17 86.30 0.45 2.98 16 8 C 0.23 12.17 3.10 29.85 0.09 12.26 16 9 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 10 O -0.58 -29.75 12.06 -148.98 -1.80 -31.55 16 11 C -0.59 -32.72 8.76 25.60 0.22 -32.50 16 12 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 13 C 0.03 1.53 5.40 84.66 0.46 1.98 16 14 N -0.90 -54.31 12.84 21.45 0.28 -54.03 16 15 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 C -0.15 -3.64 3.17 -11.84 -0.04 -3.68 16 20 H 0.08 2.12 7.09 -2.39 -0.02 2.11 16 21 C -0.11 -2.41 5.64 30.07 0.17 -2.24 16 22 C -0.15 -2.95 5.92 30.93 0.18 -2.77 16 23 C 0.07 1.11 6.63 86.83 0.58 1.69 16 24 N -0.68 -12.88 6.48 -492.46 -3.19 -16.07 16 25 C 0.10 2.10 4.13 45.23 0.19 2.28 16 26 H 0.09 1.84 8.08 -2.38 -0.02 1.82 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.23 6.59 -2.39 -0.02 1.22 16 30 H 0.06 1.13 6.22 -2.39 -0.01 1.11 16 31 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.34 12.31 6.97 -89.69 -0.63 11.68 16 34 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 35 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.35 16.07 9.04 -74.06 -0.67 15.40 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.05 1.10 6.98 -2.38 -0.02 1.08 16 42 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.35 6.48 5.79 -89.70 -0.52 5.96 16 Total: -1.00 -62.15 333.81 -2.78 -64.93 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -0.82 Total: 41.60 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 3.56 Total: -23.98 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -5.76 Total: -96.56 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -1.80 Total: -31.55 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -62.15 -2.78 -64.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576392521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.448 kcal (2) G-P(sol) polarization free energy of solvation -62.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds