Wall clock time and date at job start Mon Mar 30 2020 01:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00133 * 2 1 4 4 H 1.48509 * 109.47139 * 240.00096 * 3 2 1 5 5 H 1.48498 * 109.47141 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47256 * 120.00039 * 3 2 1 7 7 C 1.37881 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00051 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99858 * 0.02562 * 7 2 1 10 10 O 1.42903 * 112.93280 * 309.66588 * 9 7 2 11 11 C 1.53929 * 113.83123 * 81.32113 * 9 7 2 12 12 N 1.47965 * 86.17840 * 138.09067 * 11 9 7 13 13 C 1.46898 * 111.00104 * 222.41550 * 12 11 9 14 14 C 1.52997 * 109.47334 * 269.35947 * 13 12 11 15 15 H 1.09003 * 109.46893 * 55.00800 * 14 13 12 16 16 C 1.53001 * 109.46895 * 175.00017 * 14 13 12 17 17 C 1.53005 * 109.46968 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.46595 * 299.99873 * 17 16 14 19 19 H 1.08998 * 109.47462 * 299.99666 * 18 17 16 20 20 C 1.53005 * 109.46595 * 179.97438 * 18 17 16 21 21 N 1.46901 * 109.46767 * 175.00115 * 20 18 17 22 22 C 1.52995 * 109.47084 * 60.00367 * 18 17 16 23 23 C 1.52996 * 109.47317 * 299.99661 * 22 18 17 24 24 C 1.47957 * 90.76318 * 335.31583 * 12 11 9 25 25 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 26 26 H 0.96700 * 114.00311 * 48.43698 * 10 9 7 27 27 H 1.09001 * 113.76367 * 252.40742 * 11 9 7 28 28 H 1.08997 * 113.75795 * 23.78255 * 11 9 7 29 29 H 1.08996 * 109.47154 * 29.36392 * 13 12 11 30 30 H 1.09006 * 109.46996 * 149.36191 * 13 12 11 31 31 H 1.08999 * 109.47363 * 300.00048 * 16 14 13 32 32 H 1.08998 * 109.47405 * 60.00733 * 16 14 13 33 33 H 1.09001 * 109.47428 * 59.99918 * 17 16 14 34 34 H 1.08996 * 109.46968 * 180.02562 * 17 16 14 35 35 H 1.08997 * 109.47562 * 295.00219 * 20 18 17 36 36 H 1.08999 * 109.47052 * 55.00464 * 20 18 17 37 37 H 1.00896 * 110.99991 * 56.04946 * 21 20 18 38 38 H 1.00898 * 111.00036 * 180.02562 * 21 20 18 39 39 H 1.09001 * 109.47251 * 59.99763 * 22 18 17 40 40 H 1.08998 * 109.47226 * 179.97438 * 22 18 17 41 41 H 1.09001 * 109.47044 * 300.00229 * 23 22 18 42 42 H 1.09000 * 109.47659 * 180.02562 * 23 22 18 43 43 H 1.09005 * 113.75470 * 270.36692 * 24 12 11 44 44 H 1.08998 * 113.76285 * 139.01004 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0017 10 8 0.2448 -2.5621 1.0110 11 6 0.7566 -2.9306 -1.3941 12 7 1.1879 -4.2945 -1.0156 13 6 1.8746 -4.9582 -2.1318 14 6 0.8546 -5.7287 -2.9724 15 1 0.0612 -5.0524 -3.2908 16 6 1.5479 -6.3166 -4.2031 17 6 0.5277 -7.0866 -5.0442 18 6 -0.0724 -8.2184 -4.2075 19 1 0.7207 -8.8949 -3.8893 20 6 -1.0931 -8.9880 -5.0484 21 7 -1.5811 -10.1457 -4.2872 22 6 -0.7657 -7.6305 -2.9769 23 6 0.2544 -6.8605 -2.1359 24 6 2.1609 -3.7399 -0.0488 25 1 -0.4850 0.8400 0.0004 26 1 -0.3292 -1.7845 1.0440 27 1 -0.3206 -2.8320 -1.5277 28 1 1.3295 -2.5013 -2.2160 29 1 2.3659 -4.2094 -2.7530 30 1 2.6196 -5.6508 -1.7398 31 1 1.9752 -5.5102 -4.7993 32 1 2.3413 -6.9928 -3.8849 33 1 -0.2655 -6.4100 -5.3625 34 1 1.0218 -7.5057 -5.9207 35 1 -1.9305 -8.3340 -5.2917 36 1 -0.6207 -9.3313 -5.9687 37 1 -1.9657 -9.8588 -3.3996 38 1 -2.2568 -10.6711 -4.8215 39 1 -1.5589 -6.9540 -3.2952 40 1 -1.1937 -8.4368 -2.3811 41 1 1.0475 -7.5370 -1.8176 42 1 -0.2395 -6.4420 -1.2589 43 1 3.1445 -3.5472 -0.4773 44 1 2.2058 -4.2877 0.8924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580048363.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:17 Heat of formation + Delta-G solvation = -44.891296 kcal Electronic energy + Delta-G solvation = -21293.940247 eV Core-core repulsion = 18245.697118 eV Total energy + Delta-G solvation = -3048.243129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.44044 -38.41733 -35.21883 -33.93060 -32.06389 -31.24377 -30.57451 -27.92133 -25.87014 -25.02540 -23.93134 -22.68570 -21.55338 -20.11641 -19.56255 -18.53963 -17.17916 -16.19201 -15.52374 -15.07326 -14.91145 -14.72481 -14.44018 -14.08283 -13.78816 -13.63337 -13.41040 -12.96729 -12.81279 -12.17521 -11.98615 -11.93111 -11.62775 -11.48762 -11.35893 -11.03395 -10.99512 -10.92611 -10.67361 -10.57154 -10.40691 -10.16333 -9.98020 -9.79855 -9.74494 -9.21420 -8.90041 -8.62271 -8.15968 -7.73057 -6.24315 -4.34451 3.21263 3.26687 3.29204 4.26367 4.34409 4.66978 4.75308 4.81951 4.89816 5.00164 5.23055 5.28096 5.41957 5.46000 5.52277 5.65731 5.66629 5.69431 5.76470 5.88513 5.98209 6.00411 6.07975 6.14103 6.21510 6.25432 6.27439 6.37681 6.39428 6.46045 6.52557 6.69758 6.74156 6.79313 6.92788 7.08985 7.20432 7.29194 7.40904 7.77618 8.01781 8.08559 8.67185 9.35486 9.65152 10.81200 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037740 B = 0.003704 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.737209 B = 7557.080342 C = 7719.243816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.064 0.936 9 C 0.244 3.756 10 O -0.572 6.572 11 C -0.011 4.011 12 N -0.476 5.476 13 C 0.024 3.976 14 C -0.075 4.075 15 H 0.067 0.933 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.086 4.086 19 H 0.076 0.924 20 C 0.065 3.935 21 N -0.853 5.853 22 C -0.115 4.115 23 C -0.102 4.102 24 C 0.008 3.992 25 H 0.271 0.729 26 H 0.387 0.613 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.068 0.932 37 H 0.342 0.658 38 H 0.337 0.663 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -13.261 -9.324 16.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.082 0.918 9 C 0.203 3.797 10 O -0.383 6.383 11 C -0.140 4.140 12 N -0.198 5.198 13 C -0.106 4.106 14 C -0.094 4.094 15 H 0.085 0.915 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.105 4.105 19 H 0.095 0.905 20 C -0.066 4.066 21 N -0.383 5.383 22 C -0.153 4.153 23 C -0.140 4.140 24 C -0.121 4.121 25 H 0.081 0.919 26 H 0.241 0.759 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.830 -14.447 -9.016 17.050 hybrid contribution -0.086 2.455 -0.752 2.569 sum -0.916 -11.993 -9.768 15.495 Atomic orbital electron populations 1.69423 1.06043 1.27822 1.50486 1.25057 0.94988 0.99570 0.93500 0.86493 0.79576 0.82187 0.78812 1.20105 1.21030 1.19972 1.21633 0.93637 0.90833 1.51613 0.91811 1.19739 0.85335 0.90717 0.83909 1.86041 1.48130 1.47924 1.56198 1.24704 1.00513 0.87449 1.01336 1.68444 1.25593 1.16523 1.09232 1.22676 0.95906 0.97873 0.94103 1.21010 0.97718 0.96567 0.94059 0.91477 1.21564 0.97822 0.99220 0.96542 1.21515 0.98663 0.96982 0.97697 1.21205 0.97684 0.96182 0.95437 0.90547 1.21858 0.97091 0.91010 0.96634 1.58762 1.45814 1.25432 1.08328 1.21617 0.98444 0.99048 0.96147 1.21421 0.97933 0.96155 0.98489 1.24103 0.94872 0.96765 0.96365 0.91922 0.75882 0.91216 0.92491 0.94602 0.92204 0.92260 0.92175 0.92174 0.92350 0.95694 0.91399 0.84477 0.85080 0.92508 0.92364 0.92782 0.90432 0.92000 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.18 11.19 55.43 0.62 -23.56 16 2 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.50 8.62 -34.44 -0.30 -14.79 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.24 6.24 1.41 -90.84 -0.13 6.11 16 10 O -0.57 -15.59 13.50 -35.23 -0.48 -16.06 16 11 C -0.01 -0.25 7.35 -2.77 -0.02 -0.27 16 12 N -0.48 -9.87 5.61 -238.28 -1.34 -11.21 16 13 C 0.02 0.40 4.19 -3.83 -0.02 0.39 16 14 C -0.07 -1.10 2.38 -90.62 -0.22 -1.31 16 15 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 16 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 17 C -0.11 -1.18 5.20 -26.72 -0.14 -1.32 16 18 C -0.09 -0.91 2.40 -90.62 -0.22 -1.13 16 19 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 20 C 0.06 0.60 6.24 -3.82 -0.02 0.58 16 21 N -0.85 -7.53 9.62 -10.37 -0.10 -7.63 16 22 C -0.11 -1.35 4.97 -26.74 -0.13 -1.48 16 23 C -0.10 -1.44 5.09 -26.73 -0.14 -1.57 16 24 C 0.01 0.17 7.34 -2.77 -0.02 0.15 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.39 10.70 6.56 45.56 0.30 11.00 16 27 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 28 H 0.06 1.33 7.43 -51.93 -0.39 0.94 16 29 H 0.04 0.63 7.38 -51.93 -0.38 0.24 16 30 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.34 2.89 7.24 -39.29 -0.28 2.61 16 38 H 0.34 2.36 9.08 -39.29 -0.36 2.00 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.63 6.68 -51.93 -0.35 0.29 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.27 7.75 -51.93 -0.40 0.87 16 43 H 0.06 1.29 7.87 -51.93 -0.41 0.89 16 44 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 338.46 15.07 5.10 5.10 Total: -1.00 -27.42 338.46 -10.10 -37.52 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -7.31 Total: 14.77 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.58 Total: -14.38 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: -0.82 Total: -42.40 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.48 Total: -16.06 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -27.42 -10.10 -37.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580048363.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.374 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds