Wall clock time and date at job start Mon Mar 30 2020 01:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99791 * 2 1 4 4 H 1.48503 * 109.46976 * 270.00096 * 3 2 1 5 5 H 1.48499 * 109.46829 * 29.99868 * 3 2 1 6 6 H 1.48498 * 109.46996 * 150.00071 * 3 2 1 7 7 C 1.37877 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00048 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.47260 * 299.99953 * 9 7 2 11 11 O 1.42902 * 109.47207 * 59.99808 * 9 7 2 12 12 C 1.52993 * 109.47260 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47495 * 170.98195 * 12 9 7 14 14 C 1.46853 * 110.99674 * 40.31247 * 13 12 9 15 15 C 1.53042 * 109.52216 * 185.82219 * 14 13 12 16 16 C 1.53120 * 109.25956 * 300.77722 * 15 14 13 17 17 C 1.53121 * 109.15697 * 57.69908 * 16 15 14 18 18 C 1.46816 * 111.00453 * 164.56167 * 13 12 9 19 19 C 1.53116 * 109.46174 * 54.26428 * 18 13 12 20 20 C 1.53125 * 109.15559 * 182.35877 * 19 18 13 21 21 C 1.53041 * 109.26895 * 57.64788 * 20 19 18 22 22 N 1.46850 * 109.52669 * 300.80604 * 21 20 19 23 23 C 1.46852 * 111.20609 * 61.73827 * 22 21 20 24 24 H 0.96993 * 120.00365 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00516 * 59.99852 * 11 9 7 26 26 H 1.08999 * 109.47320 * 50.98183 * 12 9 7 27 27 H 1.09004 * 109.47587 * 290.98296 * 12 9 7 28 28 H 1.08999 * 109.46173 * 305.83528 * 14 13 12 29 29 H 1.09000 * 109.46313 * 65.80496 * 14 13 12 30 30 H 1.09005 * 109.50654 * 180.84624 * 15 14 13 31 31 H 1.08996 * 109.54591 * 60.73889 * 15 14 13 32 32 H 1.08994 * 109.52286 * 297.79877 * 16 15 14 33 33 H 1.08996 * 109.57876 * 177.63239 * 16 15 14 34 34 H 1.09003 * 109.49832 * 182.42961 * 17 16 15 35 35 H 1.09001 * 109.52954 * 62.34886 * 17 16 15 36 36 H 1.08996 * 109.52301 * 302.25616 * 19 18 13 37 37 H 1.08992 * 109.52554 * 62.39753 * 19 18 13 38 38 H 1.09003 * 109.50580 * 177.58433 * 20 19 18 39 39 H 1.09000 * 109.50460 * 297.67328 * 20 19 18 40 40 H 1.08997 * 109.46116 * 60.81961 * 21 20 19 41 41 H 1.08999 * 109.46578 * 180.78644 * 21 20 19 42 42 H 1.00900 * 110.99628 * 297.63186 * 22 21 20 43 43 H 1.09005 * 109.45719 * 178.28434 * 23 22 21 44 44 H 1.08998 * 109.46063 * 58.32340 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8753 -0.6796 -0.8894 11 8 3.9875 -0.5211 1.1675 12 6 4.0216 -2.6364 -0.0001 13 7 5.4746 -2.6420 -0.2166 14 6 6.1217 -1.5539 0.5275 15 6 7.6078 -1.5002 0.1659 16 6 8.2612 -2.8404 0.5147 17 6 7.5383 -3.9623 -0.2359 18 6 6.0539 -3.9444 0.1350 19 6 5.3244 -5.0510 -0.6317 20 6 5.8943 -6.4101 -0.2158 21 6 5.7443 -6.5788 1.2978 22 7 6.4603 -5.4967 1.9856 23 6 5.9003 -4.1844 1.6382 24 1 -0.4850 0.8400 0.0004 25 1 3.7019 -0.9250 1.9983 26 1 3.5331 -3.1945 -0.7988 27 1 3.7955 -3.1019 0.9593 28 1 5.6504 -0.6060 0.2680 29 1 6.0145 -1.7317 1.5976 30 1 8.0910 -0.7022 0.7297 31 1 7.7167 -1.3091 -0.9016 32 1 8.1866 -3.0135 1.5882 33 1 9.3106 -2.8227 0.2205 34 1 7.9712 -4.9234 0.0415 35 1 7.6469 -3.8110 -1.3099 36 1 4.2604 -5.0153 -0.3981 37 1 5.4674 -4.9074 -1.7026 38 1 5.3498 -7.2046 -0.7263 39 1 6.9492 -6.4603 -0.4855 40 1 4.6881 -6.5421 1.5645 41 1 6.1617 -7.5395 1.5993 42 1 7.4486 -5.5327 1.7853 43 1 6.4316 -3.4063 2.1864 44 1 4.8435 -4.1586 1.9040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:02 Heat of formation + Delta-G solvation = -40.601199 kcal Electronic energy + Delta-G solvation = -22891.477284 eV Core-core repulsion = 19843.420188 eV Total energy + Delta-G solvation = -3048.057096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71856 -37.19692 -35.67078 -33.16040 -32.28998 -31.73816 -30.56324 -28.70508 -26.57736 -25.01924 -23.77473 -23.30205 -21.98969 -20.33021 -20.16314 -18.24026 -17.40118 -16.17369 -15.43497 -15.22612 -14.89912 -14.81157 -14.70397 -14.20088 -13.94206 -13.58712 -13.28400 -13.22171 -12.73461 -12.47364 -12.29126 -12.18367 -11.96515 -11.67487 -11.44183 -11.19773 -11.04745 -10.95248 -10.83214 -10.71595 -10.39785 -10.19693 -10.14846 -9.86844 -9.69007 -9.03723 -8.72775 -8.61668 -8.15839 -7.44238 -6.13462 -4.24448 3.38945 3.48167 3.72326 4.16456 4.45337 4.52323 4.71557 4.80472 5.01849 5.07565 5.12686 5.15322 5.20332 5.29225 5.37225 5.52329 5.55072 5.72497 5.75905 5.81451 5.83990 5.86461 5.92997 5.97092 6.02902 6.06374 6.11543 6.16033 6.23243 6.30188 6.35667 6.41033 6.63700 6.67881 6.87553 6.98566 7.24031 7.36719 7.52052 7.69816 7.78196 8.27341 8.80562 8.96872 9.50958 10.97249 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.006363 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.845492 B = 4399.526230 C = 5042.113776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.083 3.917 3 Si 0.873 3.127 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.217 1.217 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.193 3.807 10 H 0.062 0.938 11 O -0.579 6.579 12 C 0.040 3.960 13 N -0.526 5.526 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.122 4.122 17 C -0.104 4.104 18 C 0.082 3.918 19 C -0.110 4.110 20 C -0.156 4.156 21 C 0.055 3.945 22 N -0.682 5.682 23 C 0.028 3.972 24 H 0.265 0.735 25 H 0.352 0.648 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.109 0.891 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.336 0.664 43 H 0.079 0.921 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.748 -9.695 1.411 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.121 4.121 3 Si 0.699 3.301 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.140 1.140 7 C -0.600 4.600 8 H 0.089 0.911 9 C 0.136 3.864 10 H 0.080 0.920 11 O -0.386 6.386 12 C -0.087 4.087 13 N -0.250 5.250 14 C -0.076 4.076 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.142 4.142 18 C -0.010 4.010 19 C -0.148 4.148 20 C -0.196 4.196 21 C -0.075 4.075 22 N -0.311 5.311 23 C -0.103 4.103 24 H 0.074 0.926 25 H 0.199 0.801 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.126 0.874 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.154 0.846 43 H 0.097 0.903 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.586 -9.187 1.063 18.123 hybrid contribution -0.012 0.362 0.117 0.380 sum 15.574 -8.825 1.180 17.940 Atomic orbital electron populations 1.69955 1.06811 1.27452 1.48821 1.25000 0.94604 0.99968 0.92524 0.87006 0.82949 0.81785 0.78328 1.21451 1.22403 1.13970 1.21450 0.89753 0.94763 1.54001 0.91118 1.19796 0.93598 0.87427 0.85605 0.92005 1.86722 1.76742 1.58628 1.16522 1.22844 0.85714 1.00631 0.99521 1.62246 1.04529 1.01495 1.56751 1.22466 0.92681 0.96866 0.95582 1.21686 0.96397 0.96170 1.01607 1.21626 0.98633 0.95740 0.99937 1.21606 0.93926 0.97681 1.00989 1.21623 0.94476 0.90666 0.94243 1.21655 1.00074 0.92677 1.00368 1.22303 1.01264 0.97919 0.98111 1.22034 0.99847 0.94476 0.91127 1.60677 1.07351 1.02971 1.60073 1.22750 1.01208 0.90906 0.95406 0.92602 0.80069 0.90817 0.95068 0.87360 0.94938 0.92237 0.91777 0.92278 0.92583 0.92450 0.91350 0.91315 0.91348 0.91577 0.91990 0.90973 0.91101 0.84598 0.90268 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 3 Si 0.87 21.60 26.99 -169.99 -4.59 17.01 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.22 -5.16 5.31 56.52 0.30 -4.86 16 7 C -0.56 -15.31 9.33 -34.44 -0.32 -15.63 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C 0.19 4.33 1.69 -27.89 -0.05 4.28 16 10 H 0.06 1.48 7.37 -51.93 -0.38 1.10 16 11 O -0.58 -12.21 6.67 -35.23 -0.23 -12.44 16 12 C 0.04 0.76 3.91 -3.83 -0.01 0.75 16 13 N -0.53 -8.65 4.62 -218.98 -1.01 -9.66 16 14 C 0.05 0.83 3.76 -3.83 -0.01 0.81 16 15 C -0.12 -1.63 6.09 -26.65 -0.16 -1.79 16 16 C -0.12 -1.42 5.70 -26.61 -0.15 -1.57 16 17 C -0.10 -1.24 4.27 -26.66 -0.11 -1.36 16 18 C 0.08 1.11 0.43 -131.58 -0.06 1.05 16 19 C -0.11 -1.46 4.47 -26.61 -0.12 -1.58 16 20 C -0.16 -1.66 5.72 -26.65 -0.15 -1.81 16 21 C 0.05 0.60 6.55 -3.83 -0.03 0.57 16 22 N -0.68 -8.05 6.80 -113.83 -0.77 -8.83 16 23 C 0.03 0.38 4.39 -3.85 -0.02 0.36 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.35 6.80 9.04 45.56 0.41 7.21 16 26 H 0.07 1.48 7.12 -51.93 -0.37 1.11 16 27 H 0.03 0.60 5.91 -51.93 -0.31 0.29 16 28 H 0.11 2.05 5.16 -51.93 -0.27 1.78 16 29 H 0.03 0.53 5.96 -51.93 -0.31 0.22 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.69 6.55 -51.93 -0.34 0.34 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 5.12 -51.93 -0.27 0.33 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.02 6.55 -51.93 -0.34 0.68 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.61 6.60 -51.93 -0.34 0.27 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.34 3.55 7.12 -39.29 -0.28 3.27 16 43 H 0.08 1.11 4.83 -51.93 -0.25 0.86 16 44 H 0.08 1.19 6.24 -51.93 -0.32 0.86 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -29.00 305.34 -8.93 -37.93 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.41 Total: 11.37 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.29 Total: -13.62 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -1.01 Total: -44.86 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -0.23 Total: -12.44 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.59 Total: 17.01 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.00 -8.93 -37.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.672 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds