Wall clock time and date at job start Mon Mar 30 2020 01:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99791 * 2 1 4 4 H 1.48503 * 109.46976 * 270.00096 * 3 2 1 5 5 H 1.48499 * 109.46829 * 29.99868 * 3 2 1 6 6 H 1.48498 * 109.46996 * 150.00071 * 3 2 1 7 7 C 1.37877 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00048 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00100 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.47260 * 299.99953 * 9 7 2 11 11 O 1.42902 * 109.47207 * 59.99808 * 9 7 2 12 12 C 1.52993 * 109.47260 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47495 * 170.98195 * 12 9 7 14 14 C 1.46853 * 110.99674 * 40.31247 * 13 12 9 15 15 C 1.53042 * 109.52216 * 185.82219 * 14 13 12 16 16 C 1.53120 * 109.25956 * 300.77722 * 15 14 13 17 17 C 1.53121 * 109.15697 * 57.69908 * 16 15 14 18 18 C 1.46816 * 111.00453 * 164.56167 * 13 12 9 19 19 C 1.53116 * 109.46174 * 54.26428 * 18 13 12 20 20 C 1.53125 * 109.15559 * 182.35877 * 19 18 13 21 21 C 1.53041 * 109.26895 * 57.64788 * 20 19 18 22 22 N 1.46850 * 109.52669 * 300.80604 * 21 20 19 23 23 C 1.46852 * 111.20609 * 61.73827 * 22 21 20 24 24 H 0.96993 * 120.00365 * 359.97438 * 1 2 3 25 25 H 0.96699 * 114.00516 * 59.99852 * 11 9 7 26 26 H 1.08999 * 109.47320 * 50.98183 * 12 9 7 27 27 H 1.09004 * 109.47587 * 290.98296 * 12 9 7 28 28 H 1.08999 * 109.46173 * 305.83528 * 14 13 12 29 29 H 1.09000 * 109.46313 * 65.80496 * 14 13 12 30 30 H 1.09005 * 109.50654 * 180.84624 * 15 14 13 31 31 H 1.08996 * 109.54591 * 60.73889 * 15 14 13 32 32 H 1.08994 * 109.52286 * 297.79877 * 16 15 14 33 33 H 1.08996 * 109.57876 * 177.63239 * 16 15 14 34 34 H 1.09003 * 109.49832 * 182.42961 * 17 16 15 35 35 H 1.09001 * 109.52954 * 62.34886 * 17 16 15 36 36 H 1.08996 * 109.52301 * 302.25616 * 19 18 13 37 37 H 1.08992 * 109.52554 * 62.39753 * 19 18 13 38 38 H 1.09003 * 109.50580 * 177.58433 * 20 19 18 39 39 H 1.09000 * 109.50460 * 297.67328 * 20 19 18 40 40 H 1.08997 * 109.46116 * 60.81961 * 21 20 19 41 41 H 1.08999 * 109.46578 * 180.78644 * 21 20 19 42 42 H 1.00900 * 110.99628 * 297.63186 * 22 21 20 43 43 H 1.09005 * 109.45719 * 178.28434 * 23 22 21 44 44 H 1.08998 * 109.46063 * 58.32340 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8753 -0.6796 -0.8894 11 8 3.9875 -0.5211 1.1675 12 6 4.0216 -2.6364 -0.0001 13 7 5.4746 -2.6420 -0.2166 14 6 6.1217 -1.5539 0.5275 15 6 7.6078 -1.5002 0.1659 16 6 8.2612 -2.8404 0.5147 17 6 7.5383 -3.9623 -0.2359 18 6 6.0539 -3.9444 0.1350 19 6 5.3244 -5.0510 -0.6317 20 6 5.8943 -6.4101 -0.2158 21 6 5.7443 -6.5788 1.2978 22 7 6.4603 -5.4967 1.9856 23 6 5.9003 -4.1844 1.6382 24 1 -0.4850 0.8400 0.0004 25 1 3.7019 -0.9250 1.9983 26 1 3.5331 -3.1945 -0.7988 27 1 3.7955 -3.1019 0.9593 28 1 5.6504 -0.6060 0.2680 29 1 6.0145 -1.7317 1.5976 30 1 8.0910 -0.7022 0.7297 31 1 7.7167 -1.3091 -0.9016 32 1 8.1866 -3.0135 1.5882 33 1 9.3106 -2.8227 0.2205 34 1 7.9712 -4.9234 0.0415 35 1 7.6469 -3.8110 -1.3099 36 1 4.2604 -5.0153 -0.3981 37 1 5.4674 -4.9074 -1.7026 38 1 5.3498 -7.2046 -0.7263 39 1 6.9492 -6.4603 -0.4855 40 1 4.6881 -6.5421 1.5645 41 1 6.1617 -7.5395 1.5993 42 1 7.4486 -5.5327 1.7853 43 1 6.4316 -3.4063 2.1864 44 1 4.8435 -4.1586 1.9040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:01 Heat of formation + Delta-G solvation = -63.624746 kcal Electronic energy + Delta-G solvation = -22892.475660 eV Core-core repulsion = 19843.420188 eV Total energy + Delta-G solvation = -3049.055472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86753 -38.67660 -36.97343 -34.49259 -34.39392 -32.79634 -31.61698 -30.44297 -27.82275 -26.61158 -24.80370 -24.65697 -23.11670 -21.89796 -21.30723 -19.64603 -19.06636 -17.34226 -16.97178 -16.69919 -16.51915 -16.17520 -15.92395 -15.43491 -15.20655 -15.01443 -14.65086 -14.47407 -14.23487 -13.81779 -13.54580 -13.35161 -13.22176 -13.08294 -12.87263 -12.79722 -12.40379 -12.27326 -12.03287 -11.91986 -11.85566 -11.72972 -11.30778 -11.21199 -11.13102 -10.82119 -10.76550 -9.98198 -9.73757 -8.67367 -8.36596 -6.51191 1.39642 1.44400 1.73214 2.42341 2.97818 3.01411 3.43343 3.66421 3.78125 3.93945 4.02173 4.08387 4.12525 4.19282 4.24183 4.31319 4.40512 4.49010 4.54389 4.57455 4.70639 4.80107 4.85738 4.95325 4.98868 5.01174 5.04654 5.07263 5.11916 5.17169 5.25363 5.27122 5.35640 5.40793 5.42652 5.55904 5.63952 5.97784 6.05225 6.28322 6.45055 6.52485 6.61233 7.12619 7.30616 8.77784 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.006363 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.845492 B = 4399.526230 C = 5042.113776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.288 1.288 5 H -0.299 1.299 6 H -0.200 1.200 7 C -0.564 4.564 8 H 0.032 0.968 9 C 0.207 3.793 10 H 0.052 0.948 11 O -0.573 6.573 12 C 0.058 3.942 13 N -0.531 5.531 14 C 0.053 3.947 15 C -0.117 4.117 16 C -0.116 4.116 17 C -0.099 4.099 18 C 0.081 3.919 19 C -0.111 4.111 20 C -0.147 4.147 21 C 0.055 3.945 22 N -0.681 5.681 23 C 0.039 3.961 24 H 0.266 0.734 25 H 0.362 0.638 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.095 0.905 42 H 0.348 0.652 43 H 0.078 0.922 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.115 -10.290 1.835 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.171 4.171 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.121 1.121 7 C -0.602 4.602 8 H 0.051 0.949 9 C 0.149 3.851 10 H 0.070 0.930 11 O -0.380 6.380 12 C -0.070 4.070 13 N -0.255 5.255 14 C -0.074 4.074 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.137 4.137 18 C -0.010 4.010 19 C -0.149 4.149 20 C -0.186 4.186 21 C -0.075 4.075 22 N -0.311 5.311 23 C -0.092 4.092 24 H 0.075 0.925 25 H 0.210 0.790 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.168 0.832 43 H 0.096 0.904 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.980 -9.806 1.496 21.416 hybrid contribution -1.102 0.454 -0.011 1.192 sum 17.878 -9.351 1.484 20.231 Atomic orbital electron populations 1.70085 1.08585 1.28397 1.50935 1.25874 0.95255 1.03664 0.92326 0.85971 0.82116 0.77195 0.78248 1.21482 1.22608 1.12111 1.21785 0.92390 0.93172 1.52871 0.94926 1.19460 0.90422 0.89427 0.85755 0.93027 1.86676 1.76220 1.58568 1.16543 1.22441 0.87900 0.97900 0.98752 1.62219 1.02664 1.03397 1.57228 1.22362 0.94425 0.95236 0.95365 1.21649 0.94347 0.98029 1.01456 1.21601 0.99575 0.94091 1.00116 1.21591 0.92126 0.99180 1.00757 1.21751 0.95817 0.88993 0.94473 1.21655 0.98791 0.94515 0.99962 1.22243 1.02179 0.96237 0.97940 1.22076 0.99057 0.95166 0.91166 1.60633 1.08115 1.02105 1.60288 1.22531 0.99608 0.92043 0.95043 0.92481 0.78981 0.92494 0.95397 0.90163 0.95081 0.90969 0.92325 0.91838 0.90296 0.90118 0.91886 0.93880 0.92024 0.90562 0.90229 0.92695 0.88663 0.83229 0.90417 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.94 13.96 21.45 0.30 -58.64 16 2 C 0.03 1.65 5.47 84.65 0.46 2.11 16 3 Si 0.94 45.22 26.99 68.60 1.85 47.07 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.20 -8.94 5.31 99.48 0.53 -8.41 16 7 C -0.56 -31.80 9.33 25.60 0.24 -31.56 16 8 H 0.03 2.04 7.99 -2.92 -0.02 2.01 16 9 C 0.21 9.43 1.69 29.85 0.05 9.48 16 10 H 0.05 2.49 7.37 -2.39 -0.02 2.47 16 11 O -0.57 -23.78 6.67 -148.98 -0.99 -24.77 16 12 C 0.06 2.27 3.91 86.30 0.34 2.61 16 13 N -0.53 -17.22 4.62 -846.71 -3.91 -21.13 16 14 C 0.05 1.65 3.76 86.33 0.32 1.98 16 15 C -0.12 -2.85 6.09 30.65 0.19 -2.66 16 16 C -0.12 -2.27 5.70 30.67 0.17 -2.10 16 17 C -0.10 -2.04 4.27 30.64 0.13 -1.91 16 18 C 0.08 2.09 0.43 3.59 0.00 2.09 16 19 C -0.11 -2.87 4.47 30.67 0.14 -2.73 16 20 C -0.15 -2.75 5.72 30.65 0.18 -2.57 16 21 C 0.05 1.06 6.55 86.33 0.57 1.63 16 22 N -0.68 -14.36 6.80 -514.05 -3.49 -17.86 16 23 C 0.04 1.01 4.39 86.31 0.38 1.38 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.36 13.78 9.04 -74.06 -0.67 13.11 16 26 H 0.06 2.40 7.12 -2.39 -0.02 2.39 16 27 H 0.03 1.11 5.91 -2.38 -0.01 1.09 16 28 H 0.08 2.96 5.16 -2.39 -0.01 2.95 16 29 H 0.03 0.97 5.96 -2.39 -0.01 0.95 16 30 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 1.22 6.55 -2.39 -0.02 1.20 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.32 5.12 -2.39 -0.01 1.31 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.31 6.55 -2.39 -0.02 1.30 16 37 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.25 6.60 -2.39 -0.02 1.24 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.35 6.01 7.12 -89.69 -0.64 5.37 16 43 H 0.08 2.03 4.83 -2.38 -0.01 2.02 16 44 H 0.05 1.51 6.24 -2.39 -0.01 1.50 16 Total: -1.00 -64.14 305.34 -3.56 -67.70 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: -0.48 Total: 29.87 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: 3.17 Total: -22.25 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -7.11 Total: -97.62 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.99 Total: -24.77 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.85 Total: 47.07 kcal Total: -64.14 -3.56 -67.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.073 kcal (2) G-P(sol) polarization free energy of solvation -64.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds