Wall clock time and date at job start Mon Mar 30 2020 01:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48499 * 109.47160 * 270.00484 * 3 2 1 5 5 H 1.48502 * 109.46999 * 30.00472 * 3 2 1 6 6 H 1.48503 * 109.47295 * 150.00174 * 3 2 1 7 7 C 1.37877 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00031 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00302 * 359.97438 * 7 2 1 10 10 H 1.09007 * 109.46540 * 300.00092 * 9 7 2 11 11 O 1.42902 * 109.47226 * 59.99442 * 9 7 2 12 12 C 1.52990 * 109.47607 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.47643 * 179.97438 * 12 9 7 14 14 C 1.48796 * 110.99681 * 290.12577 * 13 12 9 15 15 C 1.55591 * 103.55706 * 199.30844 * 14 13 12 16 16 H 1.08998 * 109.70550 * 147.38573 * 15 14 13 17 17 C 1.51565 * 107.51894 * 266.47971 * 15 14 13 18 18 C 1.52238 * 112.85210 * 150.56958 * 17 15 14 19 19 C 1.53449 * 108.04393 * 301.26269 * 18 17 15 20 20 C 1.52527 * 107.62047 * 68.44557 * 19 18 17 21 21 C 1.49410 * 113.27555 * 305.30356 * 20 19 18 22 22 C 1.53004 * 105.70654 * 149.41425 * 21 20 19 23 23 N 1.46904 * 109.46611 * 58.88877 * 22 21 20 24 24 C 1.48726 * 111.00444 * 174.55677 * 13 12 9 25 25 H 0.97003 * 120.00157 * 359.97438 * 1 2 3 26 26 H 0.96703 * 114.00008 * 60.00394 * 11 9 7 27 27 H 1.09003 * 109.47045 * 59.99528 * 12 9 7 28 28 H 1.09006 * 109.46839 * 300.00031 * 12 9 7 29 29 H 1.09002 * 110.60792 * 317.82640 * 14 13 12 30 30 H 1.08996 * 110.60618 * 80.78948 * 14 13 12 31 31 H 1.09003 * 108.80970 * 29.69682 * 17 15 14 32 32 H 1.08996 * 108.71866 * 271.37262 * 17 15 14 33 33 H 1.08996 * 109.74677 * 181.62557 * 18 17 15 34 34 H 1.08995 * 109.74758 * 60.89521 * 18 17 15 35 35 H 1.09002 * 109.82783 * 308.91146 * 19 18 17 36 36 H 1.09003 * 109.87990 * 188.00453 * 19 18 17 37 37 H 1.08999 * 108.72312 * 184.32795 * 20 19 18 38 38 H 1.08995 * 108.62698 * 66.21520 * 20 19 18 39 39 H 1.08993 * 109.47589 * 178.88855 * 22 21 20 40 40 H 1.09000 * 109.47349 * 298.89493 * 22 21 20 41 41 H 1.00906 * 110.99838 * 180.02562 * 23 22 21 42 42 H 1.00905 * 111.00271 * 303.95327 * 23 22 21 43 43 H 1.09009 * 110.39576 * 274.15402 * 24 13 12 44 44 H 1.09005 * 110.39874 * 36.44346 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5570 0.8898 11 8 0.4290 -2.5746 -1.1669 12 6 2.2453 -3.6620 -0.0005 13 7 1.5109 -4.9343 0.0001 14 6 0.8308 -5.1567 1.3047 15 6 0.5569 -6.6882 1.3168 16 1 0.6129 -7.0635 2.3386 17 6 -0.8404 -6.9061 0.7717 18 6 -0.9988 -8.2478 0.0700 19 6 0.0155 -8.3054 -1.0801 20 6 1.4088 -8.3782 -0.4637 21 6 1.6880 -7.2687 0.4972 22 6 2.6545 -7.8498 1.5313 23 7 3.8710 -8.3194 0.8548 24 6 2.4414 -6.0870 -0.1316 25 1 -0.4850 0.8401 0.0004 26 1 0.9208 -2.5291 -1.9984 27 1 2.8720 -3.6042 0.8894 28 1 2.8720 -3.6042 -0.8906 29 1 1.4849 -4.8774 2.1308 30 1 -0.1047 -4.5993 1.3496 31 1 -1.0694 -6.1099 0.0633 32 1 -1.5499 -6.8557 1.5976 33 1 -2.0101 -8.3392 -0.3260 34 1 -0.8036 -9.0568 0.7739 35 1 -0.0708 -7.4090 -1.6943 36 1 -0.1657 -9.1903 -1.6901 37 1 2.1478 -8.3420 -1.2641 38 1 1.5082 -9.3285 0.0607 39 1 2.9164 -7.0798 2.2569 40 1 2.1785 -8.6856 2.0442 41 1 4.5257 -8.7084 1.5169 42 1 3.6480 -8.9874 0.1322 43 1 2.6524 -6.2868 -1.1822 44 1 3.3667 -5.8922 0.4106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:12 Heat of formation + Delta-G solvation = -55.078978 kcal Electronic energy + Delta-G solvation = -22152.798897 eV Core-core repulsion = 19104.113998 eV Total energy + Delta-G solvation = -3048.684900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57128 -36.46860 -34.89554 -34.52778 -32.01467 -31.42120 -30.56553 -27.86615 -26.73775 -24.93512 -24.35720 -22.30331 -21.49315 -20.68716 -19.85011 -18.19331 -16.88867 -16.08850 -15.20363 -14.88885 -14.71848 -14.59689 -14.50658 -14.23094 -13.98817 -13.50209 -13.44527 -13.33063 -12.56404 -12.43852 -11.92827 -11.72209 -11.67318 -11.52418 -11.30137 -10.97273 -10.88499 -10.83512 -10.77918 -10.56129 -10.37484 -10.02704 -9.95989 -9.90212 -9.79296 -8.89066 -8.75736 -8.51569 -7.99372 -7.61376 -5.94460 -4.12438 3.31049 3.37794 3.40592 4.38695 4.41018 4.53536 4.71915 4.79840 4.88576 5.17341 5.22200 5.30781 5.33161 5.40709 5.48837 5.51196 5.62295 5.64757 5.76376 5.90357 6.02540 6.04866 6.12969 6.14478 6.17878 6.26543 6.30144 6.37178 6.40672 6.44999 6.50927 6.64108 6.67974 6.74464 6.92278 7.01463 7.30333 7.49483 7.74013 7.84173 7.94980 8.28359 8.91856 9.53484 9.70550 11.09620 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.004868 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.252321 B = 5750.464938 C = 6251.290657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.240 3.760 10 H 0.051 0.949 11 O -0.554 6.554 12 C 0.021 3.979 13 N -0.496 5.496 14 C 0.039 3.961 15 C -0.073 4.073 16 H 0.065 0.935 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.117 4.117 20 C -0.093 4.093 21 C -0.045 4.045 22 C 0.061 3.939 23 N -0.849 5.849 24 C 0.053 3.947 25 H 0.259 0.741 26 H 0.342 0.658 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.021 0.979 41 H 0.336 0.664 42 H 0.339 0.661 43 H 0.069 0.931 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.345 -18.576 1.737 18.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.182 3.818 10 H 0.069 0.931 11 O -0.355 6.355 12 C -0.107 4.107 13 N -0.220 5.220 14 C -0.089 4.089 15 C -0.093 4.093 16 H 0.084 0.916 17 C -0.147 4.147 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.131 4.131 21 C -0.046 4.046 22 C -0.070 4.070 23 N -0.379 5.379 24 C -0.075 4.075 25 H 0.069 0.931 26 H 0.185 0.815 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.088 0.912 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.436 -17.702 1.569 17.829 hybrid contribution 1.498 0.113 0.862 1.732 sum 2.935 -17.589 2.431 17.997 Atomic orbital electron populations 1.70087 1.05886 1.26269 1.47262 1.25015 0.94659 0.98988 0.93932 0.86701 0.79952 0.83673 0.78197 1.20525 1.21162 1.19927 1.21692 0.93125 0.91763 1.54603 0.92839 1.19244 0.87711 0.88483 0.86388 0.93101 1.86550 1.37711 1.96316 1.14957 1.23211 0.97346 0.90756 0.99425 1.65539 1.25214 1.01572 1.29672 1.23555 1.00009 0.94241 0.91141 1.21176 0.94376 0.95800 0.97920 0.91648 1.21127 0.95265 0.97956 1.00318 1.21423 0.98784 0.97519 0.97447 1.21509 0.94472 1.01919 0.97573 1.20681 0.97861 0.96459 0.98069 1.19869 0.94367 0.95473 0.94884 1.22526 0.90389 0.98236 0.95871 1.58773 1.14853 1.46826 1.17451 1.23117 0.94286 0.89792 1.00309 0.93082 0.81535 0.95635 0.92027 0.94809 0.89703 0.90420 0.92774 0.92233 0.92839 0.90804 0.92570 0.91705 0.93247 0.91416 0.96072 0.85186 0.84767 0.91243 0.93209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.85 12.84 55.43 0.71 -25.14 16 2 C 0.08 2.28 5.40 -17.82 -0.10 2.18 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.57 -16.09 8.76 -34.44 -0.30 -16.39 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.24 6.23 2.82 -27.89 -0.08 6.15 16 10 H 0.05 1.45 7.22 -51.92 -0.37 1.08 16 11 O -0.55 -14.79 12.60 -35.23 -0.44 -15.24 16 12 C 0.02 0.45 4.39 -3.83 -0.02 0.43 16 13 N -0.50 -9.27 5.24 -229.31 -1.20 -10.47 16 14 C 0.04 0.67 5.05 -1.39 -0.01 0.67 16 15 C -0.07 -1.00 2.70 -90.84 -0.25 -1.25 16 16 H 0.07 0.82 7.38 -51.93 -0.38 0.44 16 17 C -0.11 -1.45 5.10 -27.85 -0.14 -1.59 16 18 C -0.11 -1.28 5.97 -26.89 -0.16 -1.44 16 19 C -0.12 -1.33 6.06 -26.74 -0.16 -1.49 16 20 C -0.09 -1.02 3.69 -28.74 -0.11 -1.13 16 21 C -0.05 -0.57 0.79 -156.84 -0.12 -0.70 16 22 C 0.06 0.68 4.25 -3.82 -0.02 0.67 16 23 N -0.85 -8.49 8.83 -10.37 -0.09 -8.58 16 24 C 0.05 0.83 5.31 -2.50 -0.01 0.82 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.34 8.29 9.04 45.56 0.41 8.70 16 27 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 28 H 0.06 1.32 8.13 -51.93 -0.42 0.89 16 29 H 0.03 0.59 7.87 -51.93 -0.41 0.18 16 30 H 0.08 1.63 7.24 -51.93 -0.38 1.26 16 31 H 0.08 1.24 7.59 -51.93 -0.39 0.84 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.71 7.16 -51.93 -0.37 0.34 16 38 H 0.05 0.48 7.17 -51.93 -0.37 0.11 16 39 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 40 H 0.02 0.22 7.93 -51.93 -0.41 -0.19 16 41 H 0.34 2.77 9.08 -39.29 -0.36 2.42 16 42 H 0.34 2.99 7.25 -39.29 -0.28 2.70 16 43 H 0.07 1.10 7.48 -51.92 -0.39 0.72 16 44 H 0.05 0.83 6.98 -51.93 -0.36 0.46 16 LS Contribution 330.73 15.07 4.98 4.98 Total: -1.00 -30.50 330.73 -9.50 -40.00 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -6.97 Total: 11.02 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.47 Total: -13.06 kcal Atomic # 7 Polarization: -43.60 SS G_CDS: -0.58 Total: -44.18 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.44 Total: -15.24 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.50 -9.50 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.077 kcal (2) G-P(sol) polarization free energy of solvation -30.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds