Wall clock time and date at job start Mon Mar 30 2020 01:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48502 * 109.47184 * 269.99766 * 3 2 1 5 5 H 1.48498 * 109.47233 * 29.99813 * 3 2 1 6 6 H 1.48505 * 109.47010 * 149.99920 * 3 2 1 7 7 C 1.37879 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00490 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99860 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47199 * 300.00388 * 9 7 2 11 11 O 1.42899 * 109.46962 * 60.00187 * 9 7 2 12 12 C 1.52997 * 109.46840 * 180.02562 * 9 7 2 13 13 N 1.46909 * 109.46621 * 180.02562 * 12 9 7 14 14 C 1.47593 * 110.99745 * 290.12280 * 13 12 9 15 15 C 1.55341 * 106.92330 * 238.75035 * 14 13 12 16 16 H 1.09002 * 112.33834 * 215.13961 * 15 14 13 17 17 C 1.53005 * 106.43172 * 91.55063 * 15 14 13 18 18 C 1.52591 * 111.04093 * 197.05342 * 17 15 14 19 19 C 1.53330 * 108.41468 * 62.34804 * 18 17 15 20 20 C 1.51731 * 108.32056 * 296.24740 * 19 18 17 21 21 C 1.50746 * 112.34591 * 58.28317 * 20 19 18 22 22 C 1.53000 * 109.26675 * 186.97872 * 21 20 19 23 23 N 1.46901 * 109.46769 * 305.20363 * 22 21 20 24 24 C 1.48240 * 110.99673 * 169.28516 * 13 12 9 25 25 H 0.96994 * 119.99785 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00128 * 59.99902 * 11 9 7 27 27 H 1.08998 * 109.47500 * 60.00547 * 12 9 7 28 28 H 1.08996 * 109.47191 * 299.99218 * 12 9 7 29 29 H 1.08999 * 109.96538 * 119.38614 * 14 13 12 30 30 H 1.08999 * 109.97363 * 358.11951 * 14 13 12 31 31 H 1.08998 * 109.16495 * 317.45729 * 17 15 14 32 32 H 1.09005 * 109.16278 * 76.65245 * 17 15 14 33 33 H 1.09005 * 109.67173 * 182.07547 * 18 17 15 34 34 H 1.08995 * 109.67978 * 302.61616 * 18 17 15 35 35 H 1.08996 * 109.73642 * 55.55286 * 19 18 17 36 36 H 1.09003 * 109.73454 * 176.20481 * 19 18 17 37 37 H 1.08998 * 108.65185 * 297.56216 * 20 19 18 38 38 H 1.09009 * 108.77842 * 179.08522 * 20 19 18 39 39 H 1.09002 * 109.47398 * 65.20658 * 22 21 20 40 40 H 1.09001 * 109.47194 * 185.20839 * 22 21 20 41 41 H 1.00908 * 110.99847 * 180.02562 * 23 22 21 42 42 H 1.00899 * 111.00283 * 303.95539 * 23 22 21 43 43 H 1.08997 * 110.51895 * 26.96113 * 24 13 12 44 44 H 1.08998 * 110.51735 * 264.23437 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 7 1.5106 -4.9343 -0.0012 14 6 0.8352 -5.1556 1.2924 15 6 1.3837 -6.4909 1.8663 16 1 0.6237 -7.0508 2.4112 17 6 2.5835 -6.1249 2.7424 18 6 3.4522 -7.3482 3.0204 19 6 4.0026 -7.8648 1.6858 20 6 2.8340 -8.3225 0.8331 21 6 1.8370 -7.2189 0.5872 22 6 0.6116 -7.7950 -0.1252 23 7 1.0378 -8.4910 -1.3467 24 6 2.4227 -6.0742 -0.2585 25 1 -0.4849 0.8400 -0.0004 26 1 0.9208 -2.5291 -1.9983 27 1 2.8719 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8906 29 1 -0.2418 -5.2296 1.1420 30 1 1.0607 -4.3364 1.9751 31 1 3.1816 -5.3696 2.2328 32 1 2.2251 -5.7182 3.6881 33 1 4.2783 -7.0705 3.6752 34 1 2.8520 -8.1245 3.4950 35 1 4.5328 -7.0634 1.1714 36 1 4.6810 -8.6988 1.8655 37 1 2.3336 -9.1469 1.3411 38 1 3.2158 -8.6764 -0.1247 39 1 0.1043 -8.4980 0.5354 40 1 -0.0701 -6.9858 -0.3872 41 1 0.2458 -8.8804 -1.8360 42 1 1.5669 -7.8766 -1.9471 43 1 3.4343 -5.8357 0.0698 44 1 2.4154 -6.3381 -1.3160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:17 Heat of formation + Delta-G solvation = -61.282846 kcal Electronic energy + Delta-G solvation = -22269.115130 eV Core-core repulsion = 19220.161211 eV Total energy + Delta-G solvation = -3048.953920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66919 -36.40857 -34.86429 -34.35347 -32.06045 -31.20330 -30.49277 -27.96266 -26.87189 -24.90995 -24.54698 -22.39911 -21.30936 -20.74127 -19.66087 -18.34269 -16.94407 -16.37441 -15.15462 -14.91122 -14.77929 -14.55423 -14.35307 -14.14204 -13.93954 -13.87593 -13.24588 -12.91919 -12.80684 -12.38057 -12.17455 -11.92467 -11.67224 -11.53527 -11.33999 -11.13626 -10.96927 -10.92155 -10.85965 -10.69213 -10.31940 -10.17864 -10.01296 -9.91483 -9.79183 -8.94621 -8.56124 -8.55713 -8.05921 -7.55824 -5.98737 -4.17203 3.27773 3.34795 3.37197 4.34636 4.47207 4.53024 4.64159 4.82734 4.90813 5.08343 5.23406 5.28762 5.29171 5.37038 5.50879 5.55951 5.58281 5.70734 5.77580 5.90500 5.96756 6.01946 6.04171 6.08320 6.11388 6.16016 6.26628 6.27664 6.30603 6.39050 6.50000 6.56043 6.58857 6.61811 6.85849 7.17825 7.47298 7.52101 7.67585 7.79247 7.90320 8.23012 8.87053 9.48607 9.65265 11.05333 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.005056 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.594129 B = 5536.855031 C = 6039.506221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.574 4.574 8 H 0.053 0.947 9 C 0.239 3.761 10 H 0.052 0.948 11 O -0.554 6.554 12 C 0.027 3.973 13 N -0.514 5.514 14 C 0.048 3.952 15 C -0.100 4.100 16 H 0.082 0.918 17 C -0.114 4.114 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.088 4.088 21 C -0.054 4.054 22 C 0.073 3.927 23 N -0.850 5.850 24 C 0.050 3.950 25 H 0.260 0.740 26 H 0.341 0.659 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.044 0.956 41 H 0.336 0.664 42 H 0.340 0.660 43 H 0.043 0.957 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.611 -16.273 2.469 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.613 4.613 8 H 0.071 0.929 9 C 0.181 3.819 10 H 0.070 0.930 11 O -0.356 6.356 12 C -0.101 4.101 13 N -0.238 5.238 14 C -0.080 4.080 15 C -0.119 4.119 16 H 0.101 0.899 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.160 4.160 20 C -0.126 4.126 21 C -0.055 4.055 22 C -0.057 4.057 23 N -0.379 5.379 24 C -0.078 4.078 25 H 0.070 0.930 26 H 0.184 0.816 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.063 0.937 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.061 0.939 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.983 -16.630 3.027 17.366 hybrid contribution 1.021 1.825 -0.187 2.099 sum 5.004 -14.805 2.840 15.884 Atomic orbital electron populations 1.70085 1.05906 1.26335 1.47106 1.25018 0.94662 0.99024 0.93883 0.86697 0.79951 0.83640 0.78215 1.20512 1.21119 1.19911 1.21673 0.93091 0.91730 1.54796 0.92850 1.19288 0.87727 0.88478 0.86385 0.93039 1.86558 1.37735 1.96315 1.14948 1.23233 0.97154 0.90495 0.99222 1.63776 1.28035 1.01671 1.30284 1.23117 0.99342 0.95321 0.90234 1.22422 0.97333 0.96785 0.95409 0.89947 1.21554 0.96406 0.97704 0.99453 1.21513 0.98922 0.97880 0.97145 1.21464 0.97857 1.00536 0.96187 1.20560 0.95074 0.96912 1.00097 1.20803 0.95453 0.94594 0.94650 1.21796 0.95718 0.96446 0.91776 1.58868 1.28311 1.40876 1.09886 1.23005 0.95127 0.90559 0.99132 0.93034 0.81614 0.95535 0.92249 0.91233 0.92241 0.91991 0.92106 0.92437 0.92145 0.92125 0.92247 0.92483 0.91176 0.91913 0.93745 0.85206 0.84668 0.93866 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.62 12.84 55.43 0.71 -24.91 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.57 -15.86 8.76 -34.44 -0.30 -16.17 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.24 6.10 2.80 -27.88 -0.08 6.02 16 10 H 0.05 1.45 7.10 -51.93 -0.37 1.09 16 11 O -0.55 -14.62 12.60 -35.23 -0.44 -15.06 16 12 C 0.03 0.56 4.15 -3.82 -0.02 0.54 16 13 N -0.51 -9.15 4.76 -230.76 -1.10 -10.25 16 14 C 0.05 0.81 4.85 -2.20 -0.01 0.80 16 15 C -0.10 -1.32 3.01 -88.86 -0.27 -1.59 16 16 H 0.08 1.01 8.11 -51.93 -0.42 0.59 16 17 C -0.11 -1.46 4.62 -26.94 -0.12 -1.58 16 18 C -0.12 -1.27 5.93 -26.77 -0.16 -1.43 16 19 C -0.12 -1.33 5.78 -27.20 -0.16 -1.49 16 20 C -0.09 -1.00 4.23 -28.50 -0.12 -1.12 16 21 C -0.05 -0.68 0.48 -154.65 -0.07 -0.75 16 22 C 0.07 0.90 5.53 -3.82 -0.02 0.88 16 23 N -0.85 -9.19 8.71 -10.37 -0.09 -9.28 16 24 C 0.05 0.73 4.95 -2.61 -0.01 0.72 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.34 8.13 9.04 45.56 0.41 8.54 16 27 H 0.03 0.55 7.38 -51.93 -0.38 0.17 16 28 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 30 H 0.06 1.10 6.45 -51.93 -0.34 0.76 16 31 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.71 6.80 -51.93 -0.35 0.36 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 38 H 0.07 0.81 7.62 -51.92 -0.40 0.42 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.64 7.20 -51.93 -0.37 0.27 16 41 H 0.34 3.16 9.08 -39.29 -0.36 2.80 16 42 H 0.34 3.73 7.22 -39.29 -0.28 3.45 16 43 H 0.04 0.65 5.81 -51.93 -0.30 0.35 16 44 H 0.07 0.99 6.36 -51.93 -0.33 0.66 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -29.77 325.96 -9.21 -38.98 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -6.74 Total: 12.38 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.44 Total: -13.01 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.48 Total: -44.44 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.44 Total: -15.06 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.77 -9.21 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.303 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds