Wall clock time and date at job start Mon Mar 30 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00212 * 2 1 4 4 H 1.48502 * 109.47184 * 269.99766 * 3 2 1 5 5 H 1.48498 * 109.47233 * 29.99813 * 3 2 1 6 6 H 1.48505 * 109.47010 * 149.99920 * 3 2 1 7 7 C 1.37879 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00490 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99860 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47199 * 300.00388 * 9 7 2 11 11 O 1.42899 * 109.46962 * 60.00187 * 9 7 2 12 12 C 1.52997 * 109.46840 * 180.02562 * 9 7 2 13 13 N 1.46909 * 109.46621 * 180.02562 * 12 9 7 14 14 C 1.47593 * 110.99745 * 290.12280 * 13 12 9 15 15 C 1.55341 * 106.92330 * 238.75035 * 14 13 12 16 16 H 1.09002 * 112.33834 * 215.13961 * 15 14 13 17 17 C 1.53005 * 106.43172 * 91.55063 * 15 14 13 18 18 C 1.52591 * 111.04093 * 197.05342 * 17 15 14 19 19 C 1.53330 * 108.41468 * 62.34804 * 18 17 15 20 20 C 1.51731 * 108.32056 * 296.24740 * 19 18 17 21 21 C 1.50746 * 112.34591 * 58.28317 * 20 19 18 22 22 C 1.53000 * 109.26675 * 186.97872 * 21 20 19 23 23 N 1.46901 * 109.46769 * 305.20363 * 22 21 20 24 24 C 1.48240 * 110.99673 * 169.28516 * 13 12 9 25 25 H 0.96994 * 119.99785 * 0.02562 * 1 2 3 26 26 H 0.96696 * 114.00128 * 59.99902 * 11 9 7 27 27 H 1.08998 * 109.47500 * 60.00547 * 12 9 7 28 28 H 1.08996 * 109.47191 * 299.99218 * 12 9 7 29 29 H 1.08999 * 109.96538 * 119.38614 * 14 13 12 30 30 H 1.08999 * 109.97363 * 358.11951 * 14 13 12 31 31 H 1.08998 * 109.16495 * 317.45729 * 17 15 14 32 32 H 1.09005 * 109.16278 * 76.65245 * 17 15 14 33 33 H 1.09005 * 109.67173 * 182.07547 * 18 17 15 34 34 H 1.08995 * 109.67978 * 302.61616 * 18 17 15 35 35 H 1.08996 * 109.73642 * 55.55286 * 19 18 17 36 36 H 1.09003 * 109.73454 * 176.20481 * 19 18 17 37 37 H 1.08998 * 108.65185 * 297.56216 * 20 19 18 38 38 H 1.09009 * 108.77842 * 179.08522 * 20 19 18 39 39 H 1.09002 * 109.47398 * 65.20658 * 22 21 20 40 40 H 1.09001 * 109.47194 * 185.20839 * 22 21 20 41 41 H 1.00908 * 110.99847 * 180.02562 * 23 22 21 42 42 H 1.00899 * 111.00283 * 303.95539 * 23 22 21 43 43 H 1.08997 * 110.51895 * 26.96113 * 24 13 12 44 44 H 1.08998 * 110.51735 * 264.23437 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8897 11 8 0.4290 -2.5746 -1.1670 12 6 2.2452 -3.6621 -0.0005 13 7 1.5106 -4.9343 -0.0012 14 6 0.8352 -5.1556 1.2924 15 6 1.3837 -6.4909 1.8663 16 1 0.6237 -7.0508 2.4112 17 6 2.5835 -6.1249 2.7424 18 6 3.4522 -7.3482 3.0204 19 6 4.0026 -7.8648 1.6858 20 6 2.8340 -8.3225 0.8331 21 6 1.8370 -7.2189 0.5872 22 6 0.6116 -7.7950 -0.1252 23 7 1.0378 -8.4910 -1.3467 24 6 2.4227 -6.0742 -0.2585 25 1 -0.4849 0.8400 -0.0004 26 1 0.9208 -2.5291 -1.9983 27 1 2.8719 -3.6044 0.8895 28 1 2.8718 -3.6044 -0.8906 29 1 -0.2418 -5.2296 1.1420 30 1 1.0607 -4.3364 1.9751 31 1 3.1816 -5.3696 2.2328 32 1 2.2251 -5.7182 3.6881 33 1 4.2783 -7.0705 3.6752 34 1 2.8520 -8.1245 3.4950 35 1 4.5328 -7.0634 1.1714 36 1 4.6810 -8.6988 1.8655 37 1 2.3336 -9.1469 1.3411 38 1 3.2158 -8.6764 -0.1247 39 1 0.1043 -8.4980 0.5354 40 1 -0.0701 -6.9858 -0.3872 41 1 0.2458 -8.8804 -1.8360 42 1 1.5669 -7.8766 -1.9471 43 1 3.4343 -5.8357 0.0698 44 1 2.4154 -6.3381 -1.3160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:16 Heat of formation + Delta-G solvation = -84.484412 kcal Electronic energy + Delta-G solvation = -22270.121226 eV Core-core repulsion = 19220.161211 eV Total energy + Delta-G solvation = -3049.960015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82618 -38.13930 -36.16943 -35.56262 -34.23673 -32.41598 -31.63729 -29.69650 -28.12309 -26.68707 -25.53132 -23.85607 -22.70037 -21.74279 -21.24904 -19.43019 -19.03707 -17.40119 -16.68861 -16.55360 -16.25771 -16.12984 -15.58597 -15.50388 -15.16634 -14.94550 -14.68243 -14.54160 -14.13792 -13.63922 -13.55449 -13.21948 -13.05054 -12.87092 -12.78388 -12.72338 -12.56141 -12.37822 -12.22505 -12.02524 -11.90913 -11.71738 -11.19354 -11.01140 -10.92776 -10.78913 -10.71386 -10.08655 -9.49165 -9.04242 -8.14863 -6.41513 1.38727 1.39095 1.50084 2.36780 3.09862 3.14754 3.44532 3.55431 3.75201 3.91230 4.09113 4.17071 4.23264 4.28597 4.33938 4.43556 4.47281 4.52661 4.54171 4.62920 4.71728 4.76777 4.80858 4.93846 4.96601 5.00368 5.03445 5.10226 5.14794 5.21554 5.30340 5.38592 5.42047 5.57152 5.58563 5.61070 5.73813 6.00674 6.17204 6.23907 6.29573 6.64010 6.72422 7.32992 7.60482 8.89655 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027031 B = 0.005056 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.594129 B = 5536.855031 C = 6039.506221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.590 4.590 8 H 0.057 0.943 9 C 0.241 3.759 10 H 0.014 0.986 11 O -0.570 6.570 12 C 0.048 3.952 13 N -0.524 5.524 14 C 0.048 3.952 15 C -0.089 4.089 16 H 0.099 0.901 17 C -0.112 4.112 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.082 4.082 21 C -0.044 4.044 22 C 0.079 3.921 23 N -0.844 5.844 24 C 0.051 3.949 25 H 0.261 0.739 26 H 0.351 0.649 27 H 0.022 0.978 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.346 0.654 42 H 0.339 0.661 43 H 0.042 0.958 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.073 -17.751 2.594 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.628 4.628 8 H 0.075 0.925 9 C 0.184 3.816 10 H 0.032 0.968 11 O -0.373 6.373 12 C -0.080 4.080 13 N -0.248 5.248 14 C -0.080 4.080 15 C -0.109 4.109 16 H 0.117 0.883 17 C -0.150 4.150 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.120 4.120 21 C -0.045 4.045 22 C -0.052 4.052 23 N -0.374 5.374 24 C -0.076 4.076 25 H 0.070 0.930 26 H 0.195 0.805 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.036 0.964 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.060 0.940 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.459 -18.131 3.143 19.194 hybrid contribution 0.514 2.261 -0.244 2.331 sum 5.973 -15.870 2.900 17.203 Atomic orbital electron populations 1.70228 1.07716 1.27358 1.48390 1.25902 0.95464 1.02919 0.93305 0.85553 0.78674 0.78766 0.78544 1.19648 1.20804 1.18971 1.22057 0.93436 0.92918 1.54386 0.92471 1.19119 0.87638 0.90078 0.84815 0.96787 1.86500 1.38646 1.96470 1.15675 1.22782 0.95687 0.90442 0.99096 1.63668 1.28575 1.01552 1.30991 1.23057 0.98630 0.96738 0.89618 1.22397 0.97763 0.94758 0.95938 0.88288 1.21518 0.96197 0.98297 0.98957 1.21490 0.98900 0.96979 0.97531 1.21465 0.97831 1.00816 0.95765 1.20503 0.94768 0.96233 1.00447 1.20750 0.95938 0.94235 0.93569 1.21703 0.95011 0.95929 0.92598 1.58867 1.28664 1.40286 1.09587 1.23053 0.94489 0.90052 1.00011 0.92981 0.80490 0.95997 0.91849 0.92656 0.94740 0.94370 0.92114 0.91603 0.90760 0.93299 0.90337 0.91503 0.91035 0.90777 0.96391 0.84132 0.84722 0.93999 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.93 12.84 21.45 0.28 -54.66 16 2 C 0.03 1.51 5.40 84.65 0.46 1.97 16 3 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.59 -33.13 8.76 25.60 0.22 -32.90 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.24 12.76 2.80 29.85 0.08 12.85 16 10 H 0.01 0.85 7.10 -2.39 -0.02 0.84 16 11 O -0.57 -30.99 12.60 -148.98 -1.88 -32.87 16 12 C 0.05 2.05 4.15 86.30 0.36 2.41 16 13 N -0.52 -19.04 4.76 -883.99 -4.20 -23.25 16 14 C 0.05 1.66 4.85 86.97 0.42 2.08 16 15 C -0.09 -2.28 3.01 -9.65 -0.03 -2.31 16 16 H 0.10 2.25 8.11 -2.39 -0.02 2.23 16 17 C -0.11 -2.78 4.62 30.46 0.14 -2.64 16 18 C -0.11 -2.14 5.93 30.57 0.18 -1.96 16 19 C -0.12 -2.28 5.78 30.29 0.17 -2.11 16 20 C -0.08 -1.61 4.23 29.45 0.12 -1.48 16 21 C -0.04 -1.03 0.48 -52.27 -0.03 -1.06 16 22 C 0.08 1.80 5.53 86.30 0.48 2.28 16 23 N -0.84 -16.56 8.71 -186.71 -1.63 -18.19 16 24 C 0.05 1.47 4.95 86.35 0.43 1.90 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.35 17.10 9.04 -74.06 -0.67 16.43 16 27 H 0.02 0.94 7.38 -2.39 -0.02 0.92 16 28 H 0.06 2.61 8.07 -2.39 -0.02 2.59 16 29 H 0.06 2.05 8.04 -2.39 -0.02 2.03 16 30 H 0.03 1.35 6.45 -2.39 -0.02 1.34 16 31 H 0.04 1.12 6.55 -2.39 -0.02 1.11 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.05 1.05 6.80 -2.39 -0.02 1.03 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 38 H 0.07 1.44 7.62 -2.38 -0.02 1.42 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.02 0.51 7.20 -2.39 -0.02 0.49 16 41 H 0.35 5.81 9.08 -89.69 -0.81 5.00 16 42 H 0.34 6.85 7.22 -89.69 -0.65 6.20 16 43 H 0.04 1.23 5.81 -2.39 -0.01 1.22 16 44 H 0.08 2.08 6.36 -2.39 -0.02 2.06 16 Total: -1.00 -64.63 325.96 -3.51 -68.14 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -1.12 Total: 35.89 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 3.02 Total: -20.97 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -5.55 Total: -96.09 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.88 Total: -32.87 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -64.63 -3.51 -68.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.342 kcal (2) G-P(sol) polarization free energy of solvation -64.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds