Wall clock time and date at job start Mon Mar 30 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00167 * 2 1 4 4 H 1.48503 * 109.47275 * 270.00060 * 3 2 1 5 5 H 1.48498 * 109.47082 * 30.00001 * 3 2 1 6 6 H 1.48496 * 109.47143 * 150.00217 * 3 2 1 7 7 C 1.37877 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00207 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00087 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.47592 * 300.00531 * 9 7 2 11 11 O 1.42902 * 109.46762 * 60.00261 * 9 7 2 12 12 C 1.53001 * 109.47200 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47147 * 180.02562 * 12 9 7 14 14 C 1.49061 * 111.00367 * 290.50858 * 13 12 9 15 15 C 1.53352 * 103.71898 * 213.88600 * 14 13 12 16 16 H 1.09001 * 110.26639 * 283.90948 * 15 14 13 17 17 C 1.51631 * 117.01375 * 155.44981 * 15 14 13 18 18 C 1.53807 * 107.04037 * 183.65897 * 17 15 14 19 19 C 1.52713 * 111.74360 * 57.56046 * 18 17 15 20 20 C 1.53841 * 111.53544 * 305.95941 * 19 18 17 21 21 C 1.51451 * 107.12329 * 57.17482 * 20 19 18 22 22 C 1.53001 * 109.86029 * 54.17116 * 21 20 19 23 23 N 1.46901 * 109.47265 * 65.35862 * 22 21 20 24 24 C 1.48648 * 111.00143 * 169.99936 * 13 12 9 25 25 H 0.96999 * 119.99870 * 359.97438 * 1 2 3 26 26 H 0.96708 * 113.99554 * 59.99698 * 11 9 7 27 27 H 1.09001 * 109.46700 * 60.00477 * 12 9 7 28 28 H 1.09003 * 109.47228 * 300.00688 * 12 9 7 29 29 H 1.09000 * 110.63469 * 332.03971 * 14 13 12 30 30 H 1.09001 * 110.63561 * 95.07309 * 14 13 12 31 31 H 1.09003 * 109.94301 * 303.04267 * 17 15 14 32 32 H 1.09007 * 109.93968 * 64.19367 * 17 15 14 33 33 H 1.09008 * 109.03373 * 178.12559 * 18 17 15 34 34 H 1.08993 * 109.03935 * 297.05486 * 18 17 15 35 35 H 1.08998 * 109.16216 * 185.39199 * 19 18 17 36 36 H 1.08991 * 109.03097 * 66.43963 * 19 18 17 37 37 H 1.08999 * 109.94030 * 297.74526 * 20 19 18 38 38 H 1.08998 * 109.93346 * 176.60348 * 20 19 18 39 39 H 1.09000 * 109.47093 * 185.35425 * 22 21 20 40 40 H 1.09000 * 109.47157 * 305.35292 * 22 21 20 41 41 H 1.00905 * 110.99810 * 180.02562 * 23 22 21 42 42 H 1.00901 * 110.99526 * 303.94344 * 23 22 21 43 43 H 1.08999 * 110.17957 * 359.79866 * 24 13 12 44 44 H 1.08995 * 110.24721 * 238.01412 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8746 -0.6800 -0.8911 11 8 3.9882 -0.5208 1.1657 12 6 4.0215 -2.6366 -0.0023 13 7 5.4904 -2.6366 -0.0022 14 6 6.0248 -2.1480 -1.3052 15 6 7.3097 -2.9622 -1.4996 16 1 8.1022 -2.5756 -0.8589 17 6 7.7967 -3.1509 -2.9232 18 6 9.0305 -4.0670 -2.8597 19 6 8.7092 -5.4034 -2.1942 20 6 8.0729 -5.2052 -0.8076 21 6 6.8332 -4.3576 -1.0030 22 6 5.9237 -5.0008 -2.0518 23 7 5.4250 -6.2864 -1.5454 24 6 6.0232 -4.0035 0.2377 25 1 -0.4850 0.8400 0.0004 26 1 3.7031 -0.9246 1.9969 27 1 3.6579 -3.1497 -0.8925 28 1 3.6584 -3.1511 0.8874 29 1 5.3213 -2.3565 -2.1113 30 1 6.2467 -1.0821 -1.2539 31 1 7.0167 -3.6188 -3.5240 32 1 8.0693 -2.1873 -3.3536 33 1 9.3885 -4.2518 -3.8726 34 1 9.8151 -3.5679 -2.2912 35 1 9.6285 -5.9787 -2.0848 36 1 8.0170 -5.9584 -2.8272 37 1 8.7728 -4.6934 -0.1471 38 1 7.7997 -6.1711 -0.3827 39 1 5.0815 -4.3399 -2.2569 40 1 6.4878 -5.1659 -2.9698 41 1 4.8218 -6.7316 -2.2207 42 1 6.1883 -6.8938 -1.2871 43 1 5.2028 -4.7097 0.3652 44 1 6.6640 -4.0092 1.1193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:19 Heat of formation + Delta-G solvation = -45.337233 kcal Electronic energy + Delta-G solvation = -22305.593338 eV Core-core repulsion = 19257.330872 eV Total energy + Delta-G solvation = -3048.262466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.93998 -36.85865 -35.06342 -34.07445 -32.14861 -31.26902 -30.74713 -28.06901 -27.19869 -25.18579 -24.72642 -22.32193 -21.33119 -20.67236 -19.86740 -18.30936 -17.16752 -16.26939 -15.74191 -15.29436 -15.10797 -14.72058 -14.29570 -14.14642 -13.83298 -13.65037 -13.51406 -13.00392 -12.77225 -12.66008 -12.27585 -12.17908 -11.95279 -11.77696 -11.59538 -11.25679 -11.13631 -10.85900 -10.79957 -10.61619 -10.29317 -10.22889 -10.16530 -9.82216 -9.70287 -8.92736 -8.63217 -8.54680 -8.13026 -7.62174 -6.06325 -4.16693 3.44308 3.53662 3.82957 4.22883 4.41542 4.56145 4.60891 4.61508 4.70970 4.88227 5.12599 5.17151 5.23268 5.26371 5.29775 5.37186 5.44268 5.54139 5.69713 5.74360 5.81012 5.84199 5.87758 5.95161 6.00721 6.09232 6.10437 6.11517 6.14583 6.26738 6.36499 6.39561 6.50810 6.56349 6.75975 7.06136 7.32988 7.36556 7.51705 7.60803 7.82291 8.37561 8.91570 9.21944 9.59704 11.04541 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.005117 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.429986 B = 5470.768903 C = 5800.350291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.083 3.917 3 Si 0.870 3.130 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.215 1.215 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.203 3.797 10 H 0.049 0.951 11 O -0.571 6.571 12 C 0.040 3.960 13 N -0.517 5.517 14 C 0.051 3.949 15 C -0.095 4.095 16 H 0.082 0.918 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.100 4.100 21 C -0.080 4.080 22 C 0.064 3.936 23 N -0.846 5.846 24 C 0.057 3.943 25 H 0.264 0.736 26 H 0.353 0.647 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.044 0.956 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.339 0.661 42 H 0.336 0.664 43 H 0.072 0.928 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.050 -11.500 -5.203 22.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.602 4.602 8 H 0.088 0.912 9 C 0.145 3.855 10 H 0.066 0.934 11 O -0.376 6.376 12 C -0.088 4.088 13 N -0.240 5.240 14 C -0.077 4.077 15 C -0.115 4.115 16 H 0.101 0.899 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.138 4.138 21 C -0.081 4.081 22 C -0.066 4.066 23 N -0.376 5.376 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.199 0.801 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.152 0.848 42 H 0.149 0.851 43 H 0.090 0.910 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.976 -10.248 -4.662 21.211 hybrid contribution 0.040 -0.541 -1.248 1.361 sum 18.016 -10.789 -5.911 21.816 Atomic orbital electron populations 1.69967 1.06795 1.27347 1.49231 1.24978 0.94574 0.99946 0.92568 0.87040 0.83243 0.81782 0.78264 1.21604 1.22347 1.13695 1.21563 0.90102 0.94724 1.53777 0.91171 1.19670 0.92811 0.87206 0.85826 0.93359 1.86649 1.77962 1.56910 1.16059 1.22972 0.85188 1.00556 1.00124 1.64375 1.09211 1.20286 1.30126 1.22842 0.94284 0.99617 0.90943 1.22107 0.98068 0.94809 0.96514 0.89946 1.21458 0.97658 0.99482 0.96448 1.21531 0.97959 0.95662 1.00136 1.21662 1.00216 0.97354 0.96560 1.21303 0.96098 0.99746 0.96682 1.21393 0.94557 0.95375 0.96794 1.22102 0.97736 0.91465 0.95271 1.58647 1.24278 1.06545 1.48111 1.22519 0.98447 0.90409 0.95747 0.92697 0.80096 0.95086 0.91513 0.93742 0.90466 0.91362 0.91707 0.92413 0.92138 0.92341 0.92383 0.91476 0.91832 0.91075 0.94583 0.84843 0.85146 0.90952 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 2 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.87 22.41 26.99 -169.99 -4.59 17.82 16 4 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 5 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 6 H -0.21 -5.45 5.31 56.52 0.30 -5.15 16 7 C -0.56 -16.03 9.34 -34.44 -0.32 -16.36 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C 0.20 4.89 2.31 -27.88 -0.06 4.83 16 10 H 0.05 1.21 6.93 -51.93 -0.36 0.85 16 11 O -0.57 -13.61 10.01 -35.23 -0.35 -13.97 16 12 C 0.04 0.82 4.22 -3.83 -0.02 0.80 16 13 N -0.52 -9.13 5.09 -231.42 -1.18 -10.31 16 14 C 0.05 0.82 4.99 -2.44 -0.01 0.80 16 15 C -0.10 -1.19 2.35 -89.75 -0.21 -1.40 16 16 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 17 C -0.11 -1.17 5.47 -27.00 -0.15 -1.32 16 18 C -0.12 -1.01 5.84 -26.46 -0.15 -1.16 16 19 C -0.12 -1.01 5.48 -26.44 -0.14 -1.16 16 20 C -0.10 -0.97 4.97 -27.08 -0.13 -1.10 16 21 C -0.08 -0.95 0.50 -154.25 -0.08 -1.02 16 22 C 0.06 0.75 4.27 -3.82 -0.02 0.74 16 23 N -0.85 -8.99 8.89 -10.37 -0.09 -9.08 16 24 C 0.06 0.84 6.01 -3.19 -0.02 0.82 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.35 7.64 9.04 45.56 0.41 8.05 16 27 H 0.03 0.65 7.50 -51.93 -0.39 0.27 16 28 H 0.07 1.39 8.01 -51.93 -0.42 0.98 16 29 H 0.04 0.74 6.57 -51.93 -0.34 0.40 16 30 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 0.73 5.79 -51.93 -0.30 0.43 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.49 6.17 -51.93 -0.32 0.17 16 37 H 0.07 0.67 8.04 -51.93 -0.42 0.25 16 38 H 0.06 0.58 6.96 -51.93 -0.36 0.22 16 39 H 0.07 1.03 6.30 -51.93 -0.33 0.70 16 40 H 0.04 0.38 4.25 -51.93 -0.22 0.16 16 41 H 0.34 3.18 9.08 -39.29 -0.36 2.83 16 42 H 0.34 3.02 7.41 -39.29 -0.29 2.73 16 43 H 0.07 1.16 6.73 -51.93 -0.35 0.81 16 44 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 LS Contribution 317.57 15.07 4.79 4.79 Total: -1.00 -31.34 317.57 -8.71 -40.05 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -6.65 Total: 10.98 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -1.42 Total: -13.18 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: -0.50 Total: -46.49 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.35 Total: -13.97 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.59 Total: 17.82 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.34 -8.71 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.288 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds