Wall clock time and date at job start Mon Mar 30 2020 01:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00167 * 2 1 4 4 H 1.48503 * 109.47275 * 270.00060 * 3 2 1 5 5 H 1.48498 * 109.47082 * 30.00001 * 3 2 1 6 6 H 1.48496 * 109.47143 * 150.00217 * 3 2 1 7 7 C 1.37877 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00207 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00087 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.47592 * 300.00531 * 9 7 2 11 11 O 1.42902 * 109.46762 * 60.00261 * 9 7 2 12 12 C 1.53001 * 109.47200 * 180.02562 * 9 7 2 13 13 N 1.46893 * 109.47147 * 180.02562 * 12 9 7 14 14 C 1.49061 * 111.00367 * 290.50858 * 13 12 9 15 15 C 1.53352 * 103.71898 * 213.88600 * 14 13 12 16 16 H 1.09001 * 110.26639 * 283.90948 * 15 14 13 17 17 C 1.51631 * 117.01375 * 155.44981 * 15 14 13 18 18 C 1.53807 * 107.04037 * 183.65897 * 17 15 14 19 19 C 1.52713 * 111.74360 * 57.56046 * 18 17 15 20 20 C 1.53841 * 111.53544 * 305.95941 * 19 18 17 21 21 C 1.51451 * 107.12329 * 57.17482 * 20 19 18 22 22 C 1.53001 * 109.86029 * 54.17116 * 21 20 19 23 23 N 1.46901 * 109.47265 * 65.35862 * 22 21 20 24 24 C 1.48648 * 111.00143 * 169.99936 * 13 12 9 25 25 H 0.96999 * 119.99870 * 359.97438 * 1 2 3 26 26 H 0.96708 * 113.99554 * 59.99698 * 11 9 7 27 27 H 1.09001 * 109.46700 * 60.00477 * 12 9 7 28 28 H 1.09003 * 109.47228 * 300.00688 * 12 9 7 29 29 H 1.09000 * 110.63469 * 332.03971 * 14 13 12 30 30 H 1.09001 * 110.63561 * 95.07309 * 14 13 12 31 31 H 1.09003 * 109.94301 * 303.04267 * 17 15 14 32 32 H 1.09007 * 109.93968 * 64.19367 * 17 15 14 33 33 H 1.09008 * 109.03373 * 178.12559 * 18 17 15 34 34 H 1.08993 * 109.03935 * 297.05486 * 18 17 15 35 35 H 1.08998 * 109.16216 * 185.39199 * 19 18 17 36 36 H 1.08991 * 109.03097 * 66.43963 * 19 18 17 37 37 H 1.08999 * 109.94030 * 297.74526 * 20 19 18 38 38 H 1.08998 * 109.93346 * 176.60348 * 20 19 18 39 39 H 1.09000 * 109.47093 * 185.35425 * 22 21 20 40 40 H 1.09000 * 109.47157 * 305.35292 * 22 21 20 41 41 H 1.00905 * 110.99810 * 180.02562 * 23 22 21 42 42 H 1.00901 * 110.99526 * 303.94344 * 23 22 21 43 43 H 1.08999 * 110.17957 * 359.79866 * 24 13 12 44 44 H 1.08995 * 110.24721 * 238.01412 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 1 3.8746 -0.6800 -0.8911 11 8 3.9882 -0.5208 1.1657 12 6 4.0215 -2.6366 -0.0023 13 7 5.4904 -2.6366 -0.0022 14 6 6.0248 -2.1480 -1.3052 15 6 7.3097 -2.9622 -1.4996 16 1 8.1022 -2.5756 -0.8589 17 6 7.7967 -3.1509 -2.9232 18 6 9.0305 -4.0670 -2.8597 19 6 8.7092 -5.4034 -2.1942 20 6 8.0729 -5.2052 -0.8076 21 6 6.8332 -4.3576 -1.0030 22 6 5.9237 -5.0008 -2.0518 23 7 5.4250 -6.2864 -1.5454 24 6 6.0232 -4.0035 0.2377 25 1 -0.4850 0.8400 0.0004 26 1 3.7031 -0.9246 1.9969 27 1 3.6579 -3.1497 -0.8925 28 1 3.6584 -3.1511 0.8874 29 1 5.3213 -2.3565 -2.1113 30 1 6.2467 -1.0821 -1.2539 31 1 7.0167 -3.6188 -3.5240 32 1 8.0693 -2.1873 -3.3536 33 1 9.3885 -4.2518 -3.8726 34 1 9.8151 -3.5679 -2.2912 35 1 9.6285 -5.9787 -2.0848 36 1 8.0170 -5.9584 -2.8272 37 1 8.7728 -4.6934 -0.1471 38 1 7.7997 -6.1711 -0.3827 39 1 5.0815 -4.3399 -2.2569 40 1 6.4878 -5.1659 -2.9698 41 1 4.8218 -6.7316 -2.2207 42 1 6.1883 -6.8938 -1.2871 43 1 5.2028 -4.7097 0.3652 44 1 6.6640 -4.0092 1.1193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:19 Heat of formation + Delta-G solvation = -70.816977 kcal Electronic energy + Delta-G solvation = -22306.698222 eV Core-core repulsion = 19257.330872 eV Total energy + Delta-G solvation = -3049.367351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.96869 -38.47858 -36.54090 -34.96808 -34.41154 -32.32270 -31.90656 -29.78505 -28.29471 -26.81509 -25.72090 -23.73401 -22.37929 -21.81994 -21.42044 -19.33891 -19.20275 -17.26796 -16.87653 -16.81982 -16.50220 -16.24826 -15.79525 -15.74057 -14.97815 -14.86024 -14.56597 -14.40439 -14.30887 -13.87031 -13.63646 -13.34524 -13.28110 -12.95742 -12.86964 -12.73589 -12.56089 -12.44748 -12.11087 -11.89898 -11.72241 -11.59212 -11.16260 -11.10507 -11.04146 -10.81112 -10.65652 -10.09757 -9.48551 -9.07795 -8.36393 -6.50934 1.38192 1.43503 1.75426 2.43971 3.01491 3.08798 3.29465 3.68209 3.71309 3.87192 4.00704 4.09952 4.22094 4.27326 4.32066 4.38493 4.40311 4.48539 4.57523 4.59626 4.64096 4.70119 4.80203 4.83937 4.98784 4.99414 5.01803 5.10192 5.13448 5.22223 5.28264 5.35146 5.39526 5.44508 5.46419 5.50126 5.60146 6.06908 6.13124 6.21056 6.25968 6.61488 6.62691 7.22086 7.37482 8.78092 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030781 B = 0.005117 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.429986 B = 5470.768903 C = 5800.350291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.031 3.969 3 Si 0.938 3.062 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.034 0.966 9 C 0.213 3.787 10 H 0.043 0.957 11 O -0.573 6.573 12 C 0.058 3.942 13 N -0.525 5.525 14 C 0.046 3.954 15 C -0.086 4.086 16 H 0.083 0.917 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.117 4.117 20 C -0.096 4.096 21 C -0.072 4.072 22 C 0.071 3.929 23 N -0.855 5.855 24 C 0.057 3.943 25 H 0.267 0.733 26 H 0.364 0.636 27 H 0.018 0.982 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.054 0.946 41 H 0.346 0.654 42 H 0.348 0.652 43 H 0.059 0.941 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.990 -12.052 -5.633 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.169 4.169 3 Si 0.762 3.238 4 H -0.212 1.212 5 H -0.221 1.221 6 H -0.129 1.129 7 C -0.606 4.606 8 H 0.052 0.948 9 C 0.155 3.845 10 H 0.060 0.940 11 O -0.379 6.379 12 C -0.070 4.070 13 N -0.249 5.249 14 C -0.081 4.081 15 C -0.106 4.106 16 H 0.101 0.899 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.134 4.134 21 C -0.073 4.073 22 C -0.059 4.059 23 N -0.387 5.387 24 C -0.070 4.070 25 H 0.076 0.924 26 H 0.211 0.789 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.078 0.922 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 20.934 -10.826 -5.088 24.110 hybrid contribution -0.930 -0.433 -1.083 1.492 sum 20.003 -11.259 -6.171 23.769 Atomic orbital electron populations 1.70083 1.08455 1.28416 1.50943 1.25828 0.95247 1.03532 0.92289 0.85987 0.81979 0.77409 0.78380 1.21152 1.22115 1.12890 1.21861 0.92468 0.93282 1.52976 0.94797 1.19425 0.90040 0.89301 0.85757 0.93971 1.86580 1.77669 1.57175 1.16431 1.22571 0.87429 0.97829 0.99205 1.64288 1.06906 1.22436 1.31268 1.22860 0.95976 0.99479 0.89827 1.22038 0.96114 0.94194 0.98232 0.89894 1.21463 0.98440 1.00299 0.94652 1.21520 0.96895 0.95353 1.01205 1.21644 1.00974 0.97362 0.95417 1.21297 0.94678 0.99559 0.97866 1.21320 0.95238 0.95674 0.95085 1.21958 0.96587 0.91362 0.95999 1.58583 1.25026 1.06501 1.48548 1.22522 0.98427 0.88526 0.97574 0.92398 0.78851 0.96341 0.92202 0.94825 0.91758 0.91693 0.91400 0.90968 0.91736 0.90547 0.92154 0.91306 0.90914 0.94411 0.92841 0.84049 0.83788 0.92229 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.03 1.83 5.47 84.65 0.46 2.29 16 3 Si 0.94 46.70 26.99 68.60 1.85 48.55 16 4 H -0.28 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 6 H -0.21 -9.96 5.31 99.48 0.53 -9.44 16 7 C -0.57 -33.15 9.34 25.60 0.24 -32.91 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 9 C 0.21 10.37 2.31 29.85 0.07 10.43 16 10 H 0.04 2.13 6.93 -2.39 -0.02 2.11 16 11 O -0.57 -26.82 10.01 -148.98 -1.49 -28.31 16 12 C 0.06 2.45 4.22 86.30 0.36 2.82 16 13 N -0.53 -18.51 5.09 -886.09 -4.51 -23.02 16 14 C 0.05 1.47 4.99 86.00 0.43 1.90 16 15 C -0.09 -2.02 2.35 -10.23 -0.02 -2.05 16 16 H 0.08 1.97 8.04 -2.39 -0.02 1.95 16 17 C -0.11 -2.06 5.47 30.42 0.17 -1.89 16 18 C -0.11 -1.57 5.84 30.77 0.18 -1.39 16 19 C -0.12 -1.52 5.48 30.78 0.17 -1.35 16 20 C -0.10 -1.56 4.97 30.37 0.15 -1.41 16 21 C -0.07 -1.59 0.50 -52.02 -0.03 -1.61 16 22 C 0.07 1.59 4.27 86.30 0.37 1.95 16 23 N -0.85 -17.02 8.89 -186.71 -1.66 -18.68 16 24 C 0.06 1.64 6.01 85.75 0.52 2.16 16 25 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 26 H 0.36 15.46 9.04 -74.05 -0.67 14.79 16 27 H 0.02 0.81 7.50 -2.39 -0.02 0.79 16 28 H 0.06 2.56 8.01 -2.39 -0.02 2.54 16 29 H 0.03 1.14 6.57 -2.39 -0.02 1.13 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 1.26 5.79 -2.39 -0.01 1.24 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.78 6.17 -2.39 -0.01 0.77 16 37 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16 38 H 0.07 1.08 6.96 -2.39 -0.02 1.06 16 39 H 0.04 1.10 6.30 -2.39 -0.02 1.09 16 40 H 0.05 1.01 4.25 -2.39 -0.01 1.00 16 41 H 0.35 6.10 9.08 -89.69 -0.81 5.29 16 42 H 0.35 5.46 7.41 -89.69 -0.66 4.79 16 43 H 0.06 1.89 6.73 -2.39 -0.02 1.87 16 44 H 0.07 1.98 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -67.92 317.57 -3.76 -71.67 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: -1.31 Total: 30.22 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 3.06 Total: -21.04 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.87 Total: -101.10 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -1.49 Total: -28.31 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.85 Total: 48.55 kcal Total: -67.92 -3.76 -71.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.855 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds