Wall clock time and date at job start Mon Mar 30 2020 00:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46574 * 2 1 4 4 C 1.52994 * 109.47353 * 119.99503 * 2 1 3 5 5 C 1.53004 * 109.47388 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46920 * 300.00331 * 5 4 2 7 7 S 1.81398 * 109.47008 * 179.97438 * 6 5 4 8 8 C 1.81404 * 102.99929 * 175.00178 * 7 6 5 9 9 C 1.52999 * 109.47182 * 180.02562 * 8 7 6 10 10 C 1.50707 * 115.54590 * 294.76343 * 9 8 7 11 11 H 1.08000 * 119.99778 * 95.08291 * 10 9 8 12 12 C 1.37873 * 119.99924 * 274.80154 * 10 9 8 13 13 N 1.31517 * 120.00094 * 6.34722 * 12 10 9 14 14 Si 1.86801 * 119.99932 * 186.35128 * 12 10 9 15 15 H 1.48499 * 109.46951 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47198 * 120.00033 * 14 12 10 17 17 H 1.48508 * 109.46958 * 239.99876 * 14 12 10 18 18 C 1.52992 * 117.49950 * 80.43326 * 9 8 7 19 19 C 1.52993 * 117.50197 * 149.09579 * 9 8 7 20 20 C 1.53003 * 109.47222 * 59.99607 * 6 5 4 21 21 C 1.52992 * 109.47461 * 240.00168 * 2 1 3 22 22 H 1.08999 * 109.47446 * 299.99858 * 1 2 3 23 23 H 1.08996 * 109.47569 * 60.00434 * 1 2 3 24 24 H 1.09005 * 109.46713 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46864 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46818 * 300.00025 * 3 2 1 27 27 H 1.08999 * 109.47118 * 59.99941 * 3 2 1 28 28 H 1.09005 * 109.47087 * 60.00381 * 4 2 1 29 29 H 1.08999 * 109.47366 * 300.00688 * 4 2 1 30 30 H 1.08997 * 109.46981 * 180.02562 * 5 4 2 31 31 H 1.08993 * 109.46635 * 59.99999 * 5 4 2 32 32 H 1.08997 * 109.47488 * 300.00006 * 6 5 4 33 33 H 1.08999 * 109.46992 * 59.99769 * 8 7 6 34 34 H 1.09001 * 109.46816 * 300.00238 * 8 7 6 35 35 H 0.97002 * 120.00152 * 182.28789 * 13 12 10 36 36 H 1.09009 * 117.49997 * 215.00443 * 18 9 8 37 37 H 1.08995 * 117.50336 * 0.02562 * 18 9 8 38 38 H 1.09003 * 117.49914 * 359.97438 * 19 9 8 39 39 H 1.09000 * 117.50387 * 144.96939 * 19 9 8 40 40 H 1.09005 * 109.47120 * 60.00120 * 20 6 5 41 41 H 1.08999 * 109.47228 * 179.97438 * 20 6 5 42 42 H 1.09001 * 109.46788 * 299.99982 * 21 2 1 43 43 H 1.09005 * 109.47026 * 59.99121 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5701 -0.7205 1.2496 6 6 4.0806 -1.4415 0.0003 7 16 5.8945 -1.4402 0.0003 8 6 6.3033 -2.4537 -1.4476 9 6 7.8236 -2.5521 -1.5885 10 6 8.5332 -1.2578 -1.8928 11 1 8.9551 -0.6716 -1.0899 12 6 8.6487 -0.8250 -3.1968 13 7 8.0343 -1.4738 -4.1618 14 14 9.6781 0.6827 -3.5928 15 1 10.2602 1.2275 -2.3400 16 1 10.7714 0.3050 -4.5239 17 1 8.8202 1.7145 -4.2291 18 6 8.5511 -3.5652 -0.7025 19 6 8.3950 -3.8320 -2.2017 20 6 3.5705 -0.7203 -1.2490 21 6 2.0401 -0.7212 -1.2492 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4427 -0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6768 -1.7488 1.2493 29 1 1.6767 -0.2073 2.1392 30 1 3.9334 -1.2347 2.1393 31 1 3.9329 0.3072 1.2497 32 1 3.7176 -2.4692 0.0001 33 1 5.8840 -1.9943 -2.3427 34 1 5.8850 -3.4524 -1.3218 35 1 8.1423 -1.1892 -5.0829 36 1 9.5431 -3.2957 -0.3397 37 1 7.9467 -4.1620 -0.0195 38 1 7.6878 -4.6043 -2.5044 39 1 9.2838 -3.7380 -2.8256 40 1 3.9334 0.3075 -1.2488 41 1 3.9345 -1.2336 -2.1389 42 1 1.6767 -1.7488 -1.2492 43 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641062526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:11 Heat of formation + Delta-G solvation = -14.777080 kcal Electronic energy + Delta-G solvation = -18998.033063 eV Core-core repulsion = 16361.555905 eV Total energy + Delta-G solvation = -2636.477158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.156 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.33774 -36.52530 -33.15673 -31.90178 -30.77264 -27.59910 -27.33690 -26.30806 -25.24796 -22.57626 -21.13261 -21.07762 -19.16211 -18.32443 -16.31003 -15.56821 -15.05242 -14.78749 -14.59479 -14.12594 -13.91841 -13.53836 -13.41149 -13.28298 -12.86673 -12.28434 -12.16246 -11.98945 -11.81709 -11.70621 -11.53472 -11.16045 -10.98043 -10.93408 -10.91062 -10.83981 -10.46208 -10.35185 -10.11288 -10.03955 -9.86574 -9.56176 -8.99983 -8.76212 -8.41210 -7.96462 -6.72460 -6.01686 -4.05616 2.50655 3.30992 3.39411 3.44860 3.60010 4.44655 4.64543 4.71293 4.85447 5.09672 5.20585 5.28532 5.41690 5.41962 5.45935 5.56427 5.60751 5.66818 5.67400 5.79512 5.86050 5.91544 5.94844 6.02266 6.07515 6.11080 6.18092 6.26817 6.30104 6.34032 6.39088 6.44265 6.52547 6.57879 6.68180 6.77452 6.86754 7.09532 7.44546 7.52451 7.92026 8.44302 8.96035 9.59972 11.07863 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.005276 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.461786 B = 5305.639234 C = 5889.177112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.102 4.102 5 C -0.097 4.097 6 C -0.061 4.061 7 S -0.254 6.254 8 C -0.022 4.022 9 C 0.056 3.944 10 C -0.481 4.481 11 H 0.062 0.938 12 C 0.072 3.928 13 N -0.882 5.882 14 Si 0.887 3.113 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.284 1.284 18 C -0.205 4.205 19 C -0.150 4.150 20 C -0.114 4.114 21 C -0.105 4.105 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.258 0.742 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 1.197 7.215 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.066 4.066 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.136 4.136 6 C -0.190 4.190 7 S -0.022 6.022 8 C -0.171 4.171 9 C 0.054 3.946 10 C -0.519 4.519 11 H 0.080 0.920 12 C -0.131 4.131 13 N -0.520 5.520 14 Si 0.715 3.285 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.211 1.211 18 C -0.242 4.242 19 C -0.190 4.190 20 C -0.153 4.153 21 C -0.144 4.144 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.665 1.721 7.751 14.948 hybrid contribution -0.277 0.038 -1.364 1.393 sum -12.942 1.759 6.387 14.539 Atomic orbital electron populations 1.21863 0.95013 1.01440 1.01432 1.20539 0.94731 0.95786 0.95500 1.21987 1.02201 0.95022 1.01128 1.21586 0.95229 1.00207 0.97051 1.21347 0.94778 1.01234 0.96224 1.23085 0.96323 1.01456 0.98163 1.86798 1.02432 1.72168 1.40805 1.23039 1.01236 0.96862 0.95927 1.18469 0.87541 0.90840 0.97752 1.20403 1.34951 1.04263 0.92262 0.91976 1.24936 0.95156 0.96611 0.96395 1.70022 1.41466 1.40729 0.99744 0.86602 0.80258 0.83178 0.78437 1.19599 1.21095 1.21059 1.23004 1.01739 1.06324 0.93173 1.22578 1.02584 1.00172 0.93703 1.21890 0.94588 1.01872 0.96987 1.21630 0.95853 0.99997 0.96920 0.92904 0.92822 0.92899 0.91418 0.92963 0.93091 0.92153 0.91959 0.91546 0.90858 0.90942 0.89825 0.93846 0.93215 0.90348 0.91503 0.91986 0.89860 0.90503 0.91629 0.92333 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.47 37.16 0.31 -0.97 16 2 C -0.07 -0.71 0.77 -154.51 -0.12 -0.82 16 3 C -0.15 -1.60 7.78 37.16 0.29 -1.31 16 4 C -0.10 -1.11 4.73 -26.73 -0.13 -1.24 16 5 C -0.10 -1.29 4.94 -26.73 -0.13 -1.42 16 6 C -0.06 -0.96 2.65 -26.73 -0.07 -1.03 16 7 S -0.25 -5.13 20.84 -107.50 -2.24 -7.37 16 8 C -0.02 -0.50 5.49 37.16 0.20 -0.30 16 9 C 0.06 1.37 1.33 -155.66 -0.21 1.17 16 10 C -0.48 -13.13 8.49 -34.44 -0.29 -13.43 16 11 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 12 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 13 N -0.88 -24.79 12.92 55.43 0.72 -24.07 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 18 C -0.20 -4.57 9.96 -26.70 -0.27 -4.83 16 19 C -0.15 -3.54 9.42 -26.70 -0.25 -3.79 16 20 C -0.11 -1.74 4.84 -26.71 -0.13 -1.87 16 21 C -0.10 -1.28 4.73 -26.71 -0.13 -1.41 16 22 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.84 4.81 -51.93 -0.25 0.59 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.01 6.43 -51.93 -0.33 0.68 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 2.05 7.14 -51.92 -0.37 1.68 16 34 H 0.04 0.91 8.09 -51.92 -0.42 0.49 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.08 1.74 8.14 -51.92 -0.42 1.32 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 40 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 41 H 0.07 1.13 6.92 -51.93 -0.36 0.77 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 341.70 15.07 5.15 5.15 Total: -1.00 -27.56 341.70 -10.36 -37.92 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.95 Total: 1.47 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: -1.01 Total: -29.41 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.72 Total: -24.07 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -5.13 SS G_CDS: -2.24 Total: -7.37 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.56 -10.36 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641062526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.143 kcal (2) G-P(sol) polarization free energy of solvation -27.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds