Wall clock time and date at job start Mon Mar 30 2020 00:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46574 * 2 1 4 4 C 1.52994 * 109.47353 * 119.99503 * 2 1 3 5 5 C 1.53004 * 109.47388 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46920 * 300.00331 * 5 4 2 7 7 S 1.81398 * 109.47008 * 179.97438 * 6 5 4 8 8 C 1.81404 * 102.99929 * 175.00178 * 7 6 5 9 9 C 1.52999 * 109.47182 * 180.02562 * 8 7 6 10 10 C 1.50707 * 115.54590 * 294.76343 * 9 8 7 11 11 H 1.08000 * 119.99778 * 95.08291 * 10 9 8 12 12 C 1.37873 * 119.99924 * 274.80154 * 10 9 8 13 13 N 1.31517 * 120.00094 * 6.34722 * 12 10 9 14 14 Si 1.86801 * 119.99932 * 186.35128 * 12 10 9 15 15 H 1.48499 * 109.46951 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47198 * 120.00033 * 14 12 10 17 17 H 1.48508 * 109.46958 * 239.99876 * 14 12 10 18 18 C 1.52992 * 117.49950 * 80.43326 * 9 8 7 19 19 C 1.52993 * 117.50197 * 149.09579 * 9 8 7 20 20 C 1.53003 * 109.47222 * 59.99607 * 6 5 4 21 21 C 1.52992 * 109.47461 * 240.00168 * 2 1 3 22 22 H 1.08999 * 109.47446 * 299.99858 * 1 2 3 23 23 H 1.08996 * 109.47569 * 60.00434 * 1 2 3 24 24 H 1.09005 * 109.46713 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46864 * 180.02562 * 3 2 1 26 26 H 1.08996 * 109.46818 * 300.00025 * 3 2 1 27 27 H 1.08999 * 109.47118 * 59.99941 * 3 2 1 28 28 H 1.09005 * 109.47087 * 60.00381 * 4 2 1 29 29 H 1.08999 * 109.47366 * 300.00688 * 4 2 1 30 30 H 1.08997 * 109.46981 * 180.02562 * 5 4 2 31 31 H 1.08993 * 109.46635 * 59.99999 * 5 4 2 32 32 H 1.08997 * 109.47488 * 300.00006 * 6 5 4 33 33 H 1.08999 * 109.46992 * 59.99769 * 8 7 6 34 34 H 1.09001 * 109.46816 * 300.00238 * 8 7 6 35 35 H 0.97002 * 120.00152 * 182.28789 * 13 12 10 36 36 H 1.09009 * 117.49997 * 215.00443 * 18 9 8 37 37 H 1.08995 * 117.50336 * 0.02562 * 18 9 8 38 38 H 1.09003 * 117.49914 * 359.97438 * 19 9 8 39 39 H 1.09000 * 117.50387 * 144.96939 * 19 9 8 40 40 H 1.09005 * 109.47120 * 60.00120 * 20 6 5 41 41 H 1.08999 * 109.47228 * 179.97438 * 20 6 5 42 42 H 1.09001 * 109.46788 * 299.99982 * 21 2 1 43 43 H 1.09005 * 109.47026 * 59.99121 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5701 -0.7205 1.2496 6 6 4.0806 -1.4415 0.0003 7 16 5.8945 -1.4402 0.0003 8 6 6.3033 -2.4537 -1.4476 9 6 7.8236 -2.5521 -1.5885 10 6 8.5332 -1.2578 -1.8928 11 1 8.9551 -0.6716 -1.0899 12 6 8.6487 -0.8250 -3.1968 13 7 8.0343 -1.4738 -4.1618 14 14 9.6781 0.6827 -3.5928 15 1 10.2602 1.2275 -2.3400 16 1 10.7714 0.3050 -4.5239 17 1 8.8202 1.7145 -4.2291 18 6 8.5511 -3.5652 -0.7025 19 6 8.3950 -3.8320 -2.2017 20 6 3.5705 -0.7203 -1.2490 21 6 2.0401 -0.7212 -1.2492 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4427 -0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6768 -1.7488 1.2493 29 1 1.6767 -0.2073 2.1392 30 1 3.9334 -1.2347 2.1393 31 1 3.9329 0.3072 1.2497 32 1 3.7176 -2.4692 0.0001 33 1 5.8840 -1.9943 -2.3427 34 1 5.8850 -3.4524 -1.3218 35 1 8.1423 -1.1892 -5.0829 36 1 9.5431 -3.2957 -0.3397 37 1 7.9467 -4.1620 -0.0195 38 1 7.6878 -4.6043 -2.5044 39 1 9.2838 -3.7380 -2.8256 40 1 3.9334 0.3075 -1.2488 41 1 3.9345 -1.2336 -2.1389 42 1 1.6767 -1.7488 -1.2492 43 1 1.6766 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641062526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:10 Heat of formation + Delta-G solvation = -25.658518 kcal Electronic energy + Delta-G solvation = -18998.504918 eV Core-core repulsion = 16361.555905 eV Total energy + Delta-G solvation = -2636.949013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.33455 -38.42263 -34.20502 -33.99713 -31.84307 -29.38489 -28.15957 -27.50524 -27.11198 -23.64772 -22.94487 -22.27231 -21.06148 -19.30907 -18.19223 -17.09968 -16.61717 -16.17465 -15.74587 -15.69863 -15.31388 -15.01932 -14.75866 -14.49353 -14.09826 -13.79029 -13.65406 -13.20917 -13.04332 -12.88703 -12.84855 -12.76048 -12.55155 -12.42197 -12.30307 -12.05669 -11.93962 -11.90767 -11.48668 -11.38024 -11.11047 -10.90272 -10.79834 -10.50694 -10.35737 -9.83756 -8.37481 -8.11380 -6.20464 0.98651 1.37924 1.41185 1.51962 1.99802 2.43134 3.18127 3.53069 3.65701 3.69516 3.94626 4.06965 4.14314 4.20710 4.38405 4.41101 4.43557 4.52530 4.57591 4.60858 4.69023 4.70847 4.86307 4.88250 4.93506 4.94828 4.98673 5.06677 5.10004 5.11374 5.13169 5.21842 5.23469 5.25255 5.33347 5.50425 5.51679 5.59436 5.61607 5.66231 5.77949 6.39344 6.83239 7.47081 8.97484 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.022386 B = 0.005276 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.461786 B = 5305.639234 C = 5889.177112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.093 4.093 6 C -0.045 4.045 7 S -0.289 6.289 8 C -0.009 4.009 9 C 0.027 3.973 10 C -0.492 4.492 11 H 0.046 0.954 12 C 0.030 3.970 13 N -0.907 5.907 14 Si 0.943 3.057 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.282 1.282 18 C -0.182 4.182 19 C -0.152 4.152 20 C -0.110 4.110 21 C -0.099 4.099 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.259 0.741 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.037 0.963 42 H 0.066 0.934 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.107 1.367 8.451 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 C -0.203 4.203 4 C -0.134 4.134 5 C -0.132 4.132 6 C -0.174 4.174 7 S -0.057 6.057 8 C -0.158 4.158 9 C 0.026 3.974 10 C -0.530 4.530 11 H 0.064 0.936 12 C -0.170 4.170 13 N -0.545 5.545 14 Si 0.769 3.231 15 H -0.195 1.195 16 H -0.204 1.204 17 H -0.208 1.208 18 C -0.220 4.220 19 C -0.192 4.192 20 C -0.150 4.150 21 C -0.138 4.138 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.428 1.886 8.990 17.104 hybrid contribution 0.248 0.002 -1.717 1.734 sum -14.180 1.887 7.273 16.048 Atomic orbital electron populations 1.21815 0.93125 1.02144 1.02226 1.20538 0.96138 0.95221 0.94445 1.21978 1.00857 0.95521 1.01962 1.21579 0.92822 1.01118 0.97915 1.21357 0.96747 1.00351 0.94741 1.23183 0.92133 1.02323 0.99718 1.86767 1.07604 1.72103 1.39219 1.22710 0.99794 0.97552 0.95732 1.18592 0.88766 0.90369 0.99696 1.20543 1.35148 1.05332 0.92001 0.93616 1.25550 0.96139 0.99011 0.96330 1.70106 1.42421 1.42065 0.99895 0.85741 0.78979 0.80274 0.78128 1.19530 1.20444 1.20827 1.22979 1.01553 1.04788 0.92662 1.22502 1.02055 1.00193 0.94457 1.21800 0.97063 1.00481 0.95619 1.21608 0.93070 1.00898 0.98272 0.91664 0.92566 0.92256 0.93480 0.92806 0.91642 0.91250 0.89938 0.91237 0.91601 0.90275 0.92779 0.92645 0.93200 0.90484 0.89268 0.90614 0.91885 0.91898 0.94380 0.91570 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.47 71.98 0.61 -1.40 16 2 C -0.06 -1.20 0.77 -52.18 -0.04 -1.24 16 3 C -0.15 -2.93 7.78 71.98 0.56 -2.37 16 4 C -0.10 -1.78 4.73 30.59 0.14 -1.64 16 5 C -0.09 -2.31 4.94 30.60 0.15 -2.16 16 6 C -0.04 -1.38 2.65 30.60 0.08 -1.30 16 7 S -0.29 -11.76 20.84 -56.49 -1.18 -12.94 16 8 C -0.01 -0.43 5.49 71.98 0.40 -0.04 16 9 C 0.03 1.36 1.33 -52.93 -0.07 1.29 16 10 C -0.49 -27.44 8.49 25.60 0.22 -27.22 16 11 H 0.05 2.64 7.82 -2.91 -0.02 2.61 16 12 C 0.03 1.65 5.39 84.65 0.46 2.11 16 13 N -0.91 -51.95 12.92 21.45 0.28 -51.67 16 14 Si 0.94 44.40 29.54 68.60 2.03 46.43 16 15 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 18 C -0.18 -8.02 9.96 30.61 0.30 -7.72 16 19 C -0.15 -7.20 9.42 30.62 0.29 -6.91 16 20 C -0.11 -3.38 4.84 30.61 0.15 -3.24 16 21 C -0.10 -2.28 4.73 30.61 0.14 -2.13 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.05 1.14 4.81 -2.39 -0.01 1.12 16 26 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.75 6.43 -2.39 -0.02 1.73 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 2.75 7.14 -2.39 -0.02 2.74 16 34 H 0.05 2.33 8.09 -2.39 -0.02 2.31 16 35 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 36 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 37 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 38 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.06 3.20 8.14 -2.39 -0.02 3.18 16 40 H 0.06 2.09 6.43 -2.38 -0.02 2.07 16 41 H 0.04 1.36 6.92 -2.39 -0.02 1.34 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -59.50 341.70 5.46 -54.04 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.94 Total: 18.11 kcal Atomic # 6 Polarization: -57.35 SS G_CDS: 3.39 Total: -53.96 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.28 Total: -51.67 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -11.76 SS G_CDS: -1.18 Total: -12.94 kcal Total: -59.50 5.46 -54.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641062526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.383 kcal (2) G-P(sol) polarization free energy of solvation -59.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds