Wall clock time and date at job start Mon Mar 30 2020 00:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00238 * 2 1 4 4 C 1.53002 * 109.46710 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47435 * 65.00059 * 4 3 2 6 6 C 1.36930 * 120.00263 * 269.99646 * 5 4 3 7 7 H 1.08003 * 120.00351 * 145.88758 * 6 5 4 8 8 C 1.38813 * 119.99761 * 325.89540 * 6 5 4 9 9 N 1.31620 * 120.00202 * 336.78820 * 8 6 5 10 10 Si 1.86802 * 119.99892 * 156.78918 * 8 6 5 11 11 H 1.48501 * 109.47288 * 90.00423 * 10 8 6 12 12 H 1.48510 * 109.47111 * 209.99898 * 10 8 6 13 13 H 1.48499 * 109.47571 * 330.00092 * 10 8 6 14 14 C 1.46505 * 120.00212 * 89.99494 * 5 4 3 15 15 C 1.50700 * 109.46974 * 89.82801 * 14 5 4 16 16 N 1.30831 * 125.96516 * 275.00259 * 15 14 5 17 17 C 1.33235 * 109.83048 * 180.02562 * 16 15 14 18 18 C 1.50701 * 125.52812 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47236 * 119.99959 * 18 17 16 20 20 C 1.53001 * 109.47600 * 240.00416 * 18 17 16 21 21 N 1.30714 * 108.94980 * 0.26412 * 17 16 15 22 22 N 1.34428 * 125.95949 * 95.02863 * 15 14 5 23 23 H 0.97002 * 126.82346 * 359.96794 * 22 15 14 24 24 H 1.08999 * 109.47146 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46447 * 300.00332 * 1 2 3 26 26 H 1.09004 * 109.46779 * 59.99573 * 1 2 3 27 27 H 1.08994 * 109.46735 * 60.00117 * 3 2 1 28 28 H 1.09002 * 109.47165 * 299.99670 * 3 2 1 29 29 H 1.08995 * 109.47431 * 304.99367 * 4 3 2 30 30 H 1.09004 * 109.46623 * 185.00012 * 4 3 2 31 31 H 0.96998 * 120.00234 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47214 * 329.83452 * 14 5 4 33 33 H 1.08993 * 109.47698 * 209.83007 * 14 5 4 34 34 H 1.09001 * 109.47391 * 0.02562 * 18 17 16 35 35 H 1.08995 * 109.47125 * 300.00246 * 19 18 17 36 36 H 1.09005 * 109.46975 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.46818 * 60.00664 * 19 18 17 38 38 H 1.09001 * 109.46716 * 300.00374 * 20 18 17 39 39 H 1.09002 * 109.46859 * 59.99422 * 20 18 17 40 40 H 1.08994 * 109.47527 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0968 -0.7971 -1.3369 7 1 3.8748 -1.3027 -2.2651 8 6 4.5046 -1.5274 -0.2291 9 7 5.1971 -0.9433 0.7257 10 14 4.0707 -3.3393 -0.0935 11 1 5.1453 -4.1536 -0.7158 12 1 3.9349 -3.7100 1.3382 13 1 2.7870 -3.5948 -0.7948 14 6 4.2865 1.4004 -2.4148 15 6 5.7434 1.7843 -2.3823 16 7 6.2572 2.7956 -1.7304 17 6 7.5745 2.8367 -1.9254 18 6 8.5150 3.8582 -1.3396 19 6 9.5589 3.1521 -0.4720 20 6 9.2174 4.6125 -2.4703 21 7 7.9182 1.8511 -2.7121 22 7 6.7418 1.1476 -3.0185 23 1 6.6647 0.3608 -3.5806 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1763 0.0889 31 1 5.4818 -1.4536 1.5000 32 1 3.6729 2.3010 -2.3890 33 1 4.0775 0.8446 -3.3288 34 1 7.9512 4.5626 -0.7279 35 1 9.0584 2.6148 0.3335 36 1 10.2388 3.8910 -0.0480 37 1 10.1228 2.4475 -1.0833 38 1 9.7813 3.9079 -3.0816 39 1 8.4737 5.1155 -3.0883 40 1 9.8980 5.3510 -2.0466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646031620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:23 Heat of formation + Delta-G solvation = 49.913186 kcal Electronic energy + Delta-G solvation = -21212.978187 eV Core-core repulsion = 18065.305746 eV Total energy + Delta-G solvation = -3147.672441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26598 -37.23836 -35.69723 -35.02256 -31.76734 -31.29556 -30.30922 -28.61805 -26.93484 -26.03891 -25.66819 -23.25014 -23.13873 -20.94972 -19.77771 -18.96703 -17.11956 -16.79154 -15.74622 -15.19192 -14.88676 -14.63305 -14.43766 -14.16181 -13.96827 -13.60828 -13.44789 -13.04565 -12.68579 -12.12855 -11.97938 -11.74569 -11.37773 -11.24424 -11.02663 -10.99330 -10.86700 -10.76695 -10.71858 -10.61015 -10.21639 -10.06647 -9.76748 -9.22608 -9.18062 -8.84374 -8.65848 -8.52747 -6.77543 -5.83300 -3.38431 2.45712 3.36240 3.45180 3.47254 3.51305 3.69836 4.48470 4.62645 4.69752 5.10022 5.30840 5.36884 5.42930 5.52657 5.62391 5.75288 5.80321 5.80990 5.84135 6.00759 6.05403 6.07526 6.13549 6.14870 6.25702 6.30348 6.31334 6.49370 6.61229 6.62886 6.80599 7.08704 7.26165 7.66551 7.74889 7.90778 8.05279 8.43889 8.97306 9.07832 9.72299 10.24469 11.16789 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.005822 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.706056 B = 4807.906745 C = 5444.375296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.050 3.950 4 C 0.138 3.862 5 N -0.553 5.553 6 C -0.258 4.258 7 H 0.062 0.938 8 C 0.025 3.975 9 N -0.878 5.878 10 Si 0.902 3.098 11 H -0.291 1.291 12 H -0.289 1.289 13 H -0.275 1.275 14 C 0.207 3.793 15 C 0.296 3.704 16 N -0.552 5.552 17 C 0.224 3.776 18 C 0.003 3.997 19 C -0.141 4.141 20 C -0.139 4.139 21 N -0.339 5.339 22 N -0.478 5.478 23 H 0.434 0.566 24 H 0.073 0.927 25 H 0.026 0.974 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.029 0.971 29 H 0.107 0.893 30 H 0.052 0.948 31 H 0.255 0.745 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.053 0.947 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 7.571 -3.964 8.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C -0.029 4.029 4 C 0.012 3.988 5 N -0.271 5.271 6 C -0.388 4.388 7 H 0.080 0.920 8 C -0.177 4.177 9 N -0.519 5.519 10 Si 0.731 3.269 11 H -0.218 1.218 12 H -0.215 1.215 13 H -0.200 1.200 14 C 0.076 3.924 15 C 0.015 3.985 16 N -0.282 5.282 17 C -0.059 4.059 18 C -0.018 4.018 19 C -0.199 4.199 20 C -0.197 4.197 21 N -0.169 5.169 22 N -0.194 5.194 23 H 0.278 0.722 24 H 0.092 0.908 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.308 7.453 -3.797 8.370 hybrid contribution -0.616 -1.435 -0.075 1.564 sum -0.308 6.018 -3.872 7.163 Atomic orbital electron populations 1.22630 0.84272 1.01430 0.98440 1.88221 1.16532 1.27750 1.94839 1.23338 0.98379 0.84094 0.97103 1.21169 0.87633 0.97644 0.92329 1.43944 1.72276 1.02361 1.08568 1.18907 1.40256 0.80928 0.98659 0.92002 1.25056 0.96130 0.98009 0.98456 1.69988 1.34842 1.36272 1.10818 0.86343 0.78467 0.84983 0.77106 1.21794 1.21541 1.20046 1.19949 0.83047 0.95607 0.93809 1.26576 0.96405 0.87136 0.88411 1.70300 1.07795 1.23221 1.26909 1.23906 0.91227 0.95224 0.95547 1.19368 0.93181 0.93122 0.96129 1.21791 0.98018 1.00399 0.99698 1.21789 1.00106 0.99833 0.97977 1.77673 1.06236 1.10032 1.23005 1.47889 1.04894 1.26051 1.40569 0.72200 0.90804 0.95533 0.95253 0.95427 0.95278 0.87554 0.92989 0.93484 0.90831 0.91411 0.89115 0.92248 0.92219 0.92190 0.92158 0.92774 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.62 10.18 -35.23 -0.36 -7.98 16 3 C 0.05 0.98 6.28 37.16 0.23 1.22 16 4 C 0.14 3.18 5.72 -4.04 -0.02 3.16 16 5 N -0.55 -12.92 2.41 -174.61 -0.42 -13.34 16 6 C -0.26 -6.64 8.98 -15.06 -0.14 -6.78 16 7 H 0.06 1.57 7.93 -52.48 -0.42 1.16 16 8 C 0.03 0.68 4.94 -17.43 -0.09 0.59 16 9 N -0.88 -25.03 11.34 55.49 0.63 -24.40 16 10 Si 0.90 21.72 29.61 -169.99 -5.03 16.69 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.21 4.08 6.29 -5.19 -0.03 4.05 16 15 C 0.30 6.18 7.82 -155.70 -1.22 4.96 16 16 N -0.55 -11.95 11.19 -8.16 -0.09 -12.04 16 17 C 0.22 4.47 6.65 -156.86 -1.04 3.43 16 18 C 0.00 0.05 3.39 -91.77 -0.31 -0.26 16 19 C -0.14 -2.06 9.18 37.16 0.34 -1.72 16 20 C -0.14 -1.78 9.18 37.16 0.34 -1.44 16 21 N -0.34 -6.94 12.80 32.42 0.41 -6.52 16 22 N -0.48 -9.52 7.45 32.62 0.24 -9.28 16 23 H 0.43 7.51 8.96 -182.33 -1.63 5.88 16 24 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.11 2.85 5.33 -51.93 -0.28 2.57 16 30 H 0.05 1.17 8.07 -51.93 -0.42 0.75 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 338.16 15.07 5.10 5.10 Total: -1.00 -31.54 338.16 -8.13 -39.68 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.79 Total: 3.31 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.82 Total: 8.79 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: 0.77 Total: -65.58 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.36 Total: -7.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.54 -8.13 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646031620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.592 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds