Wall clock time and date at job start Mon Mar 30 2020 00:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 114.00238 * 2 1 4 4 C 1.53002 * 109.46710 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47435 * 65.00059 * 4 3 2 6 6 C 1.36930 * 120.00263 * 269.99646 * 5 4 3 7 7 H 1.08003 * 120.00351 * 145.88758 * 6 5 4 8 8 C 1.38813 * 119.99761 * 325.89540 * 6 5 4 9 9 N 1.31620 * 120.00202 * 336.78820 * 8 6 5 10 10 Si 1.86802 * 119.99892 * 156.78918 * 8 6 5 11 11 H 1.48501 * 109.47288 * 90.00423 * 10 8 6 12 12 H 1.48510 * 109.47111 * 209.99898 * 10 8 6 13 13 H 1.48499 * 109.47571 * 330.00092 * 10 8 6 14 14 C 1.46505 * 120.00212 * 89.99494 * 5 4 3 15 15 C 1.50700 * 109.46974 * 89.82801 * 14 5 4 16 16 N 1.30831 * 125.96516 * 275.00259 * 15 14 5 17 17 C 1.33235 * 109.83048 * 180.02562 * 16 15 14 18 18 C 1.50701 * 125.52812 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47236 * 119.99959 * 18 17 16 20 20 C 1.53001 * 109.47600 * 240.00416 * 18 17 16 21 21 N 1.30714 * 108.94980 * 0.26412 * 17 16 15 22 22 N 1.34428 * 125.95949 * 95.02863 * 15 14 5 23 23 H 0.97002 * 126.82346 * 359.96794 * 22 15 14 24 24 H 1.08999 * 109.47146 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46447 * 300.00332 * 1 2 3 26 26 H 1.09004 * 109.46779 * 59.99573 * 1 2 3 27 27 H 1.08994 * 109.46735 * 60.00117 * 3 2 1 28 28 H 1.09002 * 109.47165 * 299.99670 * 3 2 1 29 29 H 1.08995 * 109.47431 * 304.99367 * 4 3 2 30 30 H 1.09004 * 109.46623 * 185.00012 * 4 3 2 31 31 H 0.96998 * 120.00234 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47214 * 329.83452 * 14 5 4 33 33 H 1.08993 * 109.47698 * 209.83007 * 14 5 4 34 34 H 1.09001 * 109.47391 * 0.02562 * 18 17 16 35 35 H 1.08995 * 109.47125 * 300.00246 * 19 18 17 36 36 H 1.09005 * 109.46975 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.46818 * 60.00664 * 19 18 17 38 38 H 1.09001 * 109.46716 * 300.00374 * 20 18 17 39 39 H 1.09002 * 109.46859 * 59.99422 * 20 18 17 40 40 H 1.08994 * 109.47527 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0968 -0.7971 -1.3369 7 1 3.8748 -1.3027 -2.2651 8 6 4.5046 -1.5274 -0.2291 9 7 5.1971 -0.9433 0.7257 10 14 4.0707 -3.3393 -0.0935 11 1 5.1453 -4.1536 -0.7158 12 1 3.9349 -3.7100 1.3382 13 1 2.7870 -3.5948 -0.7948 14 6 4.2865 1.4004 -2.4148 15 6 5.7434 1.7843 -2.3823 16 7 6.2572 2.7956 -1.7304 17 6 7.5745 2.8367 -1.9254 18 6 8.5150 3.8582 -1.3396 19 6 9.5589 3.1521 -0.4720 20 6 9.2174 4.6125 -2.4703 21 7 7.9182 1.8511 -2.7121 22 7 6.7418 1.1476 -3.0185 23 1 6.6647 0.3608 -3.5806 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1763 0.0889 31 1 5.4818 -1.4536 1.5000 32 1 3.6729 2.3010 -2.3890 33 1 4.0775 0.8446 -3.3288 34 1 7.9512 4.5626 -0.7279 35 1 9.0584 2.6148 0.3335 36 1 10.2388 3.8910 -0.0480 37 1 10.1228 2.4475 -1.0833 38 1 9.7813 3.9079 -3.0816 39 1 8.4737 5.1155 -3.0883 40 1 9.8980 5.3510 -2.0466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646031620.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:22 Heat of formation + Delta-G solvation = 29.719853 kcal Electronic energy + Delta-G solvation = -21213.853836 eV Core-core repulsion = 18065.305746 eV Total energy + Delta-G solvation = -3148.548090 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.84519 -38.82600 -37.26741 -36.42921 -33.64657 -32.88916 -31.93476 -30.25617 -28.02542 -27.81369 -27.05764 -24.96577 -24.55081 -22.64015 -21.44964 -20.36719 -18.77120 -18.60591 -17.32064 -16.79109 -16.60206 -16.19632 -15.75322 -15.69227 -15.46087 -15.24314 -15.02025 -14.57991 -13.89939 -13.73673 -13.41571 -13.02395 -12.91844 -12.76817 -12.73212 -12.55275 -12.33927 -12.27997 -12.16720 -11.98379 -11.94095 -11.84442 -11.51713 -10.83138 -10.78115 -10.52392 -10.31166 -10.23852 -8.69640 -7.82409 -5.39439 0.86316 1.44024 1.49887 1.58706 1.96841 2.11483 2.54602 3.21198 3.24454 3.37489 3.71409 3.79945 4.08178 4.24202 4.25433 4.45915 4.50654 4.59066 4.67325 4.72552 4.75932 4.77291 4.80598 4.88901 4.94892 4.99340 4.99821 5.03685 5.06604 5.34979 5.38507 5.52455 5.68137 5.74590 5.83656 6.36922 6.41267 6.68823 7.12990 7.39052 7.81610 8.31168 9.14637 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.020289 B = 0.005822 C = 0.005142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.706056 B = 4807.906745 C = 5444.375296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.396 6.396 3 C 0.060 3.940 4 C 0.140 3.860 5 N -0.565 5.565 6 C -0.247 4.247 7 H 0.066 0.934 8 C -0.023 4.023 9 N -0.913 5.913 10 Si 0.951 3.049 11 H -0.290 1.290 12 H -0.300 1.300 13 H -0.270 1.270 14 C 0.208 3.792 15 C 0.287 3.713 16 N -0.574 5.574 17 C 0.215 3.785 18 C -0.002 4.002 19 C -0.134 4.134 20 C -0.129 4.129 21 N -0.353 5.353 22 N -0.478 5.478 23 H 0.443 0.557 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.048 0.952 31 H 0.246 0.754 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.031 0.969 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.899 8.634 -4.929 9.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.019 4.019 4 C 0.014 3.986 5 N -0.284 5.284 6 C -0.377 4.377 7 H 0.083 0.917 8 C -0.221 4.221 9 N -0.557 5.557 10 Si 0.780 3.220 11 H -0.218 1.218 12 H -0.227 1.227 13 H -0.195 1.195 14 C 0.078 3.922 15 C 0.006 3.994 16 N -0.305 5.305 17 C -0.068 4.068 18 C -0.023 4.023 19 C -0.192 4.192 20 C -0.187 4.187 21 N -0.183 5.183 22 N -0.195 5.195 23 H 0.289 0.711 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.114 0.886 35 H 0.051 0.949 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.203 8.512 -4.797 9.773 hybrid contribution -0.487 -1.687 0.168 1.764 sum -0.690 6.826 -4.629 8.276 Atomic orbital electron populations 1.22818 0.81585 1.02555 1.00121 1.88138 1.19564 1.28615 1.95210 1.23122 0.95880 0.84075 0.98809 1.21002 0.90126 0.96366 0.91130 1.44016 1.72897 1.02083 1.09357 1.19121 1.38025 0.82309 0.98285 0.91673 1.25600 0.96968 1.00739 0.98791 1.70136 1.37071 1.37085 1.11371 0.85560 0.78264 0.81914 0.76232 1.21753 1.22683 1.19450 1.20101 0.82638 0.96279 0.93149 1.26660 0.96873 0.87355 0.88514 1.70310 1.08861 1.23971 1.27378 1.24773 0.91342 0.95662 0.94985 1.19645 0.92929 0.92497 0.97205 1.21751 0.97993 1.00927 0.98548 1.21727 1.00189 0.99914 0.96857 1.77639 1.06554 1.10482 1.23628 1.47896 1.04707 1.26300 1.40593 0.71141 0.90077 0.93750 0.93536 0.93594 0.93438 0.91395 0.93344 0.94498 0.88813 0.89192 0.88597 0.94944 0.88501 0.93069 0.92921 0.93002 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -16.44 10.18 -148.98 -1.52 -17.96 16 3 C 0.06 2.26 6.28 71.98 0.45 2.71 16 4 C 0.14 6.42 5.72 86.38 0.49 6.92 16 5 N -0.56 -26.00 2.41 -706.35 -1.70 -27.70 16 6 C -0.25 -12.62 8.98 84.03 0.75 -11.87 16 7 H 0.07 3.24 7.93 -2.91 -0.02 3.21 16 8 C -0.02 -1.26 4.94 84.86 0.42 -0.84 16 9 N -0.91 -53.44 11.34 21.65 0.25 -53.19 16 10 Si 0.95 45.11 29.61 68.60 2.03 47.14 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 C 0.21 7.90 6.29 85.63 0.54 8.44 16 15 C 0.29 11.79 7.82 138.23 1.08 12.87 16 16 N -0.57 -24.62 11.19 -179.73 -2.01 -26.63 16 17 C 0.22 8.48 6.65 138.63 0.92 9.41 16 18 C 0.00 -0.05 3.39 -11.54 -0.04 -0.09 16 19 C -0.13 -3.76 9.18 71.98 0.66 -3.10 16 20 C -0.13 -3.00 9.18 71.98 0.66 -2.34 16 21 N -0.35 -14.30 12.80 -51.34 -0.66 -14.95 16 22 N -0.48 -18.79 7.45 -50.71 -0.38 -19.17 16 23 H 0.44 15.08 8.96 -213.09 -1.91 13.17 16 24 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 3.74 5.33 -2.39 -0.01 3.72 16 30 H 0.05 2.19 8.07 -2.39 -0.02 2.17 16 31 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.09 3.16 8.07 -2.39 -0.02 3.14 16 33 H 0.09 2.99 8.04 -2.39 -0.02 2.97 16 34 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -68.28 338.16 2.32 -65.97 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -0.89 Total: 22.36 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 7.19 Total: 24.13 kcal Atomic # 7 Polarization: -137.14 SS G_CDS: -4.50 Total: -141.64 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.52 Total: -17.96 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -68.28 2.32 -65.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646031620.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.685 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds