Wall clock time and date at job start Mon Mar 30 2020 00:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 N 1.28711 * 125.86987 * 275.30814 * 3 2 1 5 5 N 1.28639 * 110.18088 * 179.97438 * 4 3 2 6 6 C 1.33773 * 108.88065 * 359.76514 * 5 4 3 7 7 C 1.50701 * 126.74818 * 180.23520 * 6 5 4 8 8 C 1.35319 * 125.87041 * 95.27784 * 3 2 1 9 9 C 1.50698 * 126.90642 * 359.97438 * 8 3 2 10 10 N 1.46501 * 109.47652 * 102.45248 * 9 8 3 11 11 C 1.36941 * 119.99831 * 82.33389 * 10 9 8 12 12 H 1.07995 * 120.00408 * 227.06541 * 11 10 9 13 13 C 1.38808 * 119.99572 * 47.07447 * 11 10 9 14 14 N 1.31620 * 120.00532 * 23.15791 * 13 11 10 15 15 Si 1.86804 * 119.99834 * 203.16152 * 13 11 10 16 16 H 1.48501 * 109.47358 * 89.99593 * 15 13 11 17 17 H 1.48503 * 109.47241 * 210.00115 * 15 13 11 18 18 H 1.48502 * 109.46698 * 329.99657 * 15 13 11 19 19 C 1.46498 * 120.00022 * 262.62406 * 10 9 8 20 20 C 1.53006 * 109.46835 * 261.94096 * 19 10 9 21 21 O 1.42903 * 109.46950 * 67.97908 * 20 19 10 22 22 C 1.42907 * 113.99573 * 184.81107 * 21 20 19 23 23 H 1.09001 * 109.46707 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47422 * 299.99805 * 1 2 3 25 25 H 1.09004 * 109.46859 * 60.00191 * 1 2 3 26 26 H 1.09001 * 109.47004 * 239.99942 * 2 1 3 27 27 H 1.09004 * 109.46859 * 119.99809 * 2 1 3 28 28 H 1.09000 * 109.47118 * 273.36015 * 7 6 5 29 29 H 1.09003 * 109.47609 * 33.36141 * 7 6 5 30 30 H 1.08999 * 109.47378 * 153.35981 * 7 6 5 31 31 H 1.09003 * 109.47486 * 342.44931 * 9 8 3 32 32 H 1.09002 * 109.46957 * 222.45067 * 9 8 3 33 33 H 0.96995 * 120.00168 * 184.97347 * 14 13 11 34 34 H 1.09000 * 109.47232 * 21.93383 * 19 10 9 35 35 H 1.08994 * 109.47683 * 141.94115 * 19 10 9 36 36 H 1.09001 * 109.46931 * 187.97976 * 20 19 10 37 37 H 1.09001 * 109.46698 * 307.97955 * 20 19 10 38 38 H 1.08994 * 109.46885 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47163 * 300.00120 * 22 21 20 40 40 H 1.08997 * 109.46924 * 59.99979 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1787 2.1244 -1.0385 5 7 2.6214 3.2815 -0.6921 6 6 2.7575 3.3124 0.6383 7 6 3.2416 4.4732 1.4684 8 6 2.3777 2.0951 1.0919 9 6 2.3533 1.6305 2.5253 10 7 3.7140 1.2972 2.9539 11 6 4.5618 2.2878 3.3727 12 1 5.5740 2.3264 2.9981 13 6 4.1202 3.2421 4.2787 14 7 3.1048 2.9758 5.0727 15 14 4.9671 4.9046 4.3712 16 1 4.3075 5.8490 3.4341 17 1 4.8708 5.4329 5.7558 18 1 6.3963 4.7535 3.9974 19 6 4.1697 -0.0948 2.9287 20 6 4.0438 -0.6981 4.3291 21 8 2.6621 -0.8225 4.6717 22 6 2.4330 -1.2767 6.0072 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.3297 4.4486 1.5277 29 1 2.9240 5.4079 1.0063 30 1 2.8214 4.4028 2.4717 31 1 1.7192 0.7480 2.6105 32 1 1.9574 2.4248 3.1580 33 1 2.7500 3.6661 5.6545 34 1 3.5566 -0.6652 2.2310 35 1 5.2114 -0.1305 2.6100 36 1 4.5120 -1.6824 4.3441 37 1 4.5400 -0.0487 5.0504 38 1 1.3605 -1.3451 6.1887 39 1 2.8870 -2.2587 6.1399 40 1 2.8770 -0.5730 6.7114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646032596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:29 Heat of formation + Delta-G solvation = 68.280807 kcal Electronic energy + Delta-G solvation = -22117.571112 eV Core-core repulsion = 18970.695151 eV Total energy + Delta-G solvation = -3146.875962 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42270 -37.30657 -35.59890 -35.02721 -31.89169 -31.67784 -30.48231 -28.66035 -27.27403 -25.70060 -25.19398 -24.11599 -23.16899 -20.94031 -20.28258 -19.57556 -17.11077 -16.11768 -15.69699 -15.57476 -15.19162 -14.85046 -14.48646 -14.16546 -13.71179 -13.48376 -13.29307 -13.01729 -12.59402 -12.35617 -11.91588 -11.84417 -11.66437 -11.52099 -11.36211 -11.29072 -11.00671 -10.91613 -10.69471 -10.36851 -10.26321 -10.17102 -10.03695 -9.79391 -9.20209 -8.86894 -8.51132 -7.98341 -6.66705 -5.87309 -3.58908 2.41079 3.03265 3.31678 3.38719 3.42466 3.44112 4.40823 4.59289 4.79268 5.03455 5.13032 5.26050 5.32556 5.43892 5.60960 5.67507 5.72688 5.88424 5.91756 5.94253 6.07725 6.10499 6.16304 6.17825 6.19944 6.28936 6.56493 6.56686 6.70378 6.82318 6.83904 6.89294 7.19335 7.30516 7.44635 7.75791 7.95172 8.46478 9.04100 9.34031 9.62686 10.29261 11.07082 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.010582 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.198856 B = 2645.458107 C = 4301.967306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.298 5.298 4 N -0.122 5.122 5 N -0.284 5.284 6 C -0.017 4.017 7 C -0.051 4.051 8 C -0.001 4.001 9 C 0.225 3.775 10 N -0.562 5.562 11 C -0.272 4.272 12 H 0.055 0.945 13 C 0.036 3.964 14 N -0.863 5.863 15 Si 0.872 3.128 16 H -0.270 1.270 17 H -0.294 1.294 18 H -0.276 1.276 19 C 0.150 3.850 20 C 0.050 3.950 21 O -0.377 6.377 22 C 0.041 3.959 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.038 0.962 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.522 -7.564 -1.964 8.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.093 5.093 4 N -0.099 5.099 5 N -0.151 5.151 6 C -0.155 4.155 7 C -0.109 4.109 8 C -0.135 4.135 9 C 0.095 3.905 10 N -0.282 5.282 11 C -0.402 4.402 12 H 0.073 0.927 13 C -0.167 4.167 14 N -0.502 5.502 15 Si 0.700 3.300 16 H -0.196 1.196 17 H -0.221 1.221 18 H -0.201 1.201 19 C 0.024 3.976 20 C -0.029 4.029 21 O -0.296 6.296 22 C -0.056 4.056 23 H 0.096 0.904 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.113 0.887 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.832 -7.414 -3.448 9.030 hybrid contribution 0.707 0.556 1.492 1.742 sum -3.125 -6.858 -1.956 7.786 Atomic orbital electron populations 1.22124 0.93732 1.03149 1.03428 1.21884 0.95801 0.78033 1.05005 1.47182 1.43925 1.12769 1.05450 1.78030 1.20583 0.98594 1.12733 1.74859 1.15737 1.11601 1.12918 1.21647 1.06434 0.96857 0.90598 1.20120 1.01236 0.91799 0.97766 1.23955 1.02967 0.92538 0.94086 1.19350 0.88140 0.99783 0.83189 1.43514 1.10986 1.00833 1.72852 1.18812 0.95831 1.06056 1.19464 0.92727 1.25288 0.97872 0.99995 0.93548 1.70200 1.26923 1.31728 1.21341 0.86950 0.80292 0.85737 0.76999 1.19629 1.22073 1.20105 1.21025 0.97886 0.86453 0.92265 1.23242 0.82159 0.96719 1.00769 1.87849 1.25565 1.87621 1.28530 1.22523 1.00782 0.96691 0.85605 0.90352 0.91501 0.91713 0.88702 0.87916 0.91083 0.93058 0.90032 0.93360 0.88538 0.93519 0.94395 0.92755 0.96220 0.92366 0.90954 0.95866 0.94226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.11 1.58 6.81 -4.04 -0.03 1.55 16 3 N -0.30 -5.63 3.34 -57.05 -0.19 -5.82 16 4 N -0.12 -2.56 13.16 60.35 0.79 -1.76 16 5 N -0.28 -6.43 12.41 33.29 0.41 -6.01 16 6 C -0.02 -0.38 7.25 -82.78 -0.60 -0.98 16 7 C -0.05 -1.08 7.39 36.01 0.27 -0.81 16 8 C 0.00 -0.03 6.51 -82.09 -0.53 -0.56 16 9 C 0.22 4.84 5.31 -5.19 -0.03 4.81 16 10 N -0.56 -12.64 2.35 -174.61 -0.41 -13.05 16 11 C -0.27 -6.71 8.11 -15.06 -0.12 -6.84 16 12 H 0.06 1.41 7.93 -52.49 -0.42 1.00 16 13 C 0.04 0.91 3.54 -17.43 -0.06 0.84 16 14 N -0.86 -22.40 12.20 55.49 0.68 -21.72 16 15 Si 0.87 19.77 26.69 -169.99 -4.54 15.23 16 16 H -0.27 -5.89 6.32 56.52 0.36 -5.54 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C 0.15 2.93 6.03 -4.04 -0.02 2.90 16 20 C 0.05 0.95 6.22 37.16 0.23 1.18 16 21 O -0.38 -7.34 10.69 -35.23 -0.38 -7.71 16 22 C 0.04 0.66 11.01 101.05 1.11 1.77 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.10 1.38 6.22 -51.93 -0.32 1.05 16 28 H 0.07 1.55 6.88 -51.93 -0.36 1.19 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 1.82 5.26 -51.93 -0.27 1.55 16 31 H 0.05 0.98 7.00 -51.93 -0.36 0.62 16 32 H 0.10 2.35 5.82 -51.93 -0.30 2.05 16 33 H 0.25 6.47 8.32 -40.82 -0.34 6.13 16 34 H 0.04 0.67 7.01 -51.93 -0.36 0.31 16 35 H 0.05 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -28.85 323.70 -4.38 -33.23 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.22 Total: 0.43 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 0.59 Total: 2.31 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 1.28 Total: -48.37 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.38 Total: -7.71 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.54 Total: 15.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.85 -4.38 -33.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646032596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.511 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds