Wall clock time and date at job start Mon Mar 30 2020 00:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 N 1.28711 * 125.86987 * 275.30814 * 3 2 1 5 5 N 1.28639 * 110.18088 * 179.97438 * 4 3 2 6 6 C 1.33773 * 108.88065 * 359.76514 * 5 4 3 7 7 C 1.50701 * 126.74818 * 180.23520 * 6 5 4 8 8 C 1.35319 * 125.87041 * 95.27784 * 3 2 1 9 9 C 1.50698 * 126.90642 * 359.97438 * 8 3 2 10 10 N 1.46501 * 109.47652 * 102.45248 * 9 8 3 11 11 C 1.36941 * 119.99831 * 82.33389 * 10 9 8 12 12 H 1.07995 * 120.00408 * 227.06541 * 11 10 9 13 13 C 1.38808 * 119.99572 * 47.07447 * 11 10 9 14 14 N 1.31620 * 120.00532 * 23.15791 * 13 11 10 15 15 Si 1.86804 * 119.99834 * 203.16152 * 13 11 10 16 16 H 1.48501 * 109.47358 * 89.99593 * 15 13 11 17 17 H 1.48503 * 109.47241 * 210.00115 * 15 13 11 18 18 H 1.48502 * 109.46698 * 329.99657 * 15 13 11 19 19 C 1.46498 * 120.00022 * 262.62406 * 10 9 8 20 20 C 1.53006 * 109.46835 * 261.94096 * 19 10 9 21 21 O 1.42903 * 109.46950 * 67.97908 * 20 19 10 22 22 C 1.42907 * 113.99573 * 184.81107 * 21 20 19 23 23 H 1.09001 * 109.46707 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47422 * 299.99805 * 1 2 3 25 25 H 1.09004 * 109.46859 * 60.00191 * 1 2 3 26 26 H 1.09001 * 109.47004 * 239.99942 * 2 1 3 27 27 H 1.09004 * 109.46859 * 119.99809 * 2 1 3 28 28 H 1.09000 * 109.47118 * 273.36015 * 7 6 5 29 29 H 1.09003 * 109.47609 * 33.36141 * 7 6 5 30 30 H 1.08999 * 109.47378 * 153.35981 * 7 6 5 31 31 H 1.09003 * 109.47486 * 342.44931 * 9 8 3 32 32 H 1.09002 * 109.46957 * 222.45067 * 9 8 3 33 33 H 0.96995 * 120.00168 * 184.97347 * 14 13 11 34 34 H 1.09000 * 109.47232 * 21.93383 * 19 10 9 35 35 H 1.08994 * 109.47683 * 141.94115 * 19 10 9 36 36 H 1.09001 * 109.46931 * 187.97976 * 20 19 10 37 37 H 1.09001 * 109.46698 * 307.97955 * 20 19 10 38 38 H 1.08994 * 109.46885 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47163 * 300.00120 * 22 21 20 40 40 H 1.08997 * 109.46924 * 59.99979 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1787 2.1244 -1.0385 5 7 2.6214 3.2815 -0.6921 6 6 2.7575 3.3124 0.6383 7 6 3.2416 4.4732 1.4684 8 6 2.3777 2.0951 1.0919 9 6 2.3533 1.6305 2.5253 10 7 3.7140 1.2972 2.9539 11 6 4.5618 2.2878 3.3727 12 1 5.5740 2.3264 2.9981 13 6 4.1202 3.2421 4.2787 14 7 3.1048 2.9758 5.0727 15 14 4.9671 4.9046 4.3712 16 1 4.3075 5.8490 3.4341 17 1 4.8708 5.4329 5.7558 18 1 6.3963 4.7535 3.9974 19 6 4.1697 -0.0948 2.9287 20 6 4.0438 -0.6981 4.3291 21 8 2.6621 -0.8225 4.6717 22 6 2.4330 -1.2767 6.0072 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.3297 4.4486 1.5277 29 1 2.9240 5.4079 1.0063 30 1 2.8214 4.4028 2.4717 31 1 1.7192 0.7480 2.6105 32 1 1.9574 2.4248 3.1580 33 1 2.7500 3.6661 5.6545 34 1 3.5566 -0.6652 2.2310 35 1 5.2114 -0.1305 2.6100 36 1 4.5120 -1.6824 4.3441 37 1 4.5400 -0.0487 5.0504 38 1 1.3605 -1.3451 6.1887 39 1 2.8870 -2.2587 6.1399 40 1 2.8770 -0.5730 6.7114 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646032596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:28 Heat of formation + Delta-G solvation = 49.410643 kcal Electronic energy + Delta-G solvation = -22118.389384 eV Core-core repulsion = 18970.695151 eV Total energy + Delta-G solvation = -3147.694233 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.03697 -38.81900 -37.25784 -36.40551 -33.61637 -33.43723 -31.81814 -30.22618 -28.97860 -27.09561 -26.93714 -25.42945 -24.76604 -22.56614 -21.78874 -21.20863 -18.82430 -17.66446 -17.24445 -17.09194 -16.77367 -16.51460 -15.88905 -15.58392 -15.26664 -15.12042 -14.88486 -14.42102 -14.15915 -13.70963 -13.48217 -13.38950 -13.14273 -13.03346 -12.87371 -12.70144 -12.51809 -12.44596 -12.20147 -12.12005 -12.07259 -11.83478 -11.65815 -11.46339 -10.74501 -10.41896 -10.30698 -9.67071 -8.51202 -7.75952 -5.51099 0.80384 1.48727 1.56051 1.57844 1.64674 1.69933 2.55367 3.20086 3.26372 3.56973 3.73367 3.80605 4.01927 4.20682 4.21381 4.27894 4.43668 4.50860 4.57360 4.65508 4.72009 4.75927 4.77580 4.83246 4.86155 4.91918 4.98243 5.05247 5.13842 5.21113 5.24242 5.27275 5.44549 5.58754 5.77373 5.92765 6.52834 6.58154 7.20441 7.68484 7.79925 8.43044 9.14250 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013031 B = 0.010582 C = 0.006507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.198856 B = 2645.458107 C = 4301.967306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.284 5.284 4 N -0.122 5.122 5 N -0.308 5.308 6 C -0.035 4.035 7 C -0.043 4.043 8 C -0.007 4.007 9 C 0.240 3.760 10 N -0.573 5.573 11 C -0.271 4.271 12 H 0.040 0.960 13 C 0.012 3.988 14 N -0.886 5.886 15 Si 0.908 3.092 16 H -0.258 1.258 17 H -0.303 1.303 18 H -0.279 1.279 19 C 0.145 3.855 20 C 0.060 3.940 21 O -0.398 6.398 22 C 0.039 3.961 23 H 0.115 0.885 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.251 0.749 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.022 0.978 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.080 -9.338 -2.677 10.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.080 5.080 4 N -0.100 5.100 5 N -0.175 5.175 6 C -0.174 4.174 7 C -0.102 4.102 8 C -0.143 4.143 9 C 0.111 3.889 10 N -0.293 5.293 11 C -0.401 4.401 12 H 0.057 0.943 13 C -0.189 4.189 14 N -0.526 5.526 15 Si 0.736 3.264 16 H -0.183 1.183 17 H -0.230 1.230 18 H -0.204 1.204 19 C 0.020 3.980 20 C -0.019 4.019 21 O -0.317 6.317 22 C -0.057 4.057 23 H 0.133 0.867 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.137 0.863 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.041 0.959 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.393 -9.211 -4.180 11.028 hybrid contribution 0.857 0.985 1.686 2.133 sum -3.536 -8.227 -2.494 9.295 Atomic orbital electron populations 1.22105 0.91851 1.05265 1.02433 1.22414 0.97349 0.75473 1.06596 1.47556 1.42257 1.14008 1.04155 1.77934 1.20344 0.98515 1.13247 1.74828 1.17032 1.12623 1.13062 1.21861 1.07037 0.97643 0.90832 1.20013 1.00483 0.92583 0.97137 1.23792 1.03454 0.92627 0.94383 1.19039 0.87801 0.99174 0.82883 1.43633 1.10915 1.01755 1.72981 1.18753 0.95552 1.06906 1.18920 0.94279 1.25595 0.98259 1.01617 0.93440 1.70264 1.28131 1.32041 1.22144 0.86395 0.79533 0.83954 0.76548 1.18317 1.22986 1.20427 1.21160 0.98418 0.85113 0.93343 1.23051 0.82159 0.97573 0.99133 1.87799 1.25574 1.88082 1.30229 1.22661 1.02078 0.97385 0.83610 0.86669 0.92866 0.92285 0.86282 0.87135 0.91938 0.91559 0.91331 0.92091 0.91453 0.93931 0.92145 0.92514 0.92912 0.95907 0.89236 0.93094 0.96148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 71.98 0.74 -2.47 16 2 C 0.10 2.48 6.81 86.38 0.59 3.07 16 3 N -0.28 -10.22 3.34 -334.40 -1.12 -11.33 16 4 N -0.12 -4.97 13.16 37.02 0.49 -4.48 16 5 N -0.31 -13.77 12.41 -48.61 -0.60 -14.38 16 6 C -0.04 -1.56 7.25 41.59 0.30 -1.26 16 7 C -0.04 -1.86 7.39 71.24 0.53 -1.33 16 8 C -0.01 -0.31 6.51 41.35 0.27 -0.04 16 9 C 0.24 10.23 5.31 85.63 0.45 10.68 16 10 N -0.57 -25.48 2.35 -706.34 -1.66 -27.14 16 11 C -0.27 -13.47 8.11 84.03 0.68 -12.79 16 12 H 0.04 2.06 7.93 -2.91 -0.02 2.03 16 13 C 0.01 0.62 3.54 84.86 0.30 0.92 16 14 N -0.89 -46.65 12.20 21.65 0.26 -46.39 16 15 Si 0.91 40.87 26.69 68.60 1.83 42.70 16 16 H -0.26 -11.00 6.32 99.48 0.63 -10.37 16 17 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 C 0.15 5.43 6.03 86.38 0.52 5.95 16 20 C 0.06 2.16 6.22 71.98 0.45 2.61 16 21 O -0.40 -14.76 10.69 -148.98 -1.59 -16.35 16 22 C 0.04 1.18 11.01 113.37 1.25 2.43 16 23 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.11 2.58 6.22 -2.39 -0.01 2.57 16 28 H 0.06 2.73 6.88 -2.39 -0.02 2.72 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 3.09 5.26 -2.39 -0.01 3.08 16 31 H 0.06 2.40 7.00 -2.39 -0.02 2.38 16 32 H 0.07 3.32 5.82 -2.39 -0.01 3.30 16 33 H 0.25 13.00 8.32 -92.71 -0.77 12.23 16 34 H 0.06 1.97 7.01 -2.39 -0.02 1.96 16 35 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.02 0.98 8.08 -2.39 -0.02 0.96 16 38 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -61.86 323.70 4.63 -57.22 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 0.94 Total: 12.38 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 6.08 Total: 7.78 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -2.62 Total: -103.72 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.59 Total: -16.35 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.83 Total: 42.70 kcal Total: -61.86 4.63 -57.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646032596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.634 kcal (2) G-P(sol) polarization free energy of solvation -61.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds