Wall clock time and date at job start Mon Mar 30 2020 00:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47037 * 2 1 4 4 N 1.28722 * 125.86706 * 269.96873 * 3 2 1 5 5 N 1.28637 * 110.17715 * 180.02562 * 4 3 2 6 6 C 1.33777 * 108.88727 * 359.77270 * 5 4 3 7 7 C 1.35312 * 125.87347 * 89.99904 * 3 2 1 8 8 C 1.50706 * 126.90801 * 359.94119 * 7 3 2 9 9 N 1.46899 * 109.47139 * 275.91785 * 8 7 3 10 10 C 1.46900 * 111.00086 * 174.72075 * 9 8 7 11 11 C 1.50700 * 109.46927 * 190.00216 * 10 9 8 12 12 H 1.07996 * 120.00288 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99792 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00141 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99975 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47283 * 89.99864 * 15 13 11 17 17 H 1.48503 * 109.47119 * 210.00008 * 15 13 11 18 18 H 1.48497 * 109.47124 * 329.99770 * 15 13 11 19 19 C 1.46900 * 111.00117 * 298.67626 * 9 8 7 20 20 C 1.53004 * 109.46734 * 289.87635 * 19 9 8 21 21 O 1.42894 * 109.47095 * 66.94602 * 20 19 9 22 22 C 1.42898 * 114.00082 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47252 * 300.00249 * 1 2 3 24 24 H 1.09000 * 109.46865 * 60.00249 * 1 2 3 25 25 H 1.09003 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47252 * 239.99751 * 2 1 3 27 27 H 1.09004 * 109.47309 * 119.99600 * 2 1 3 28 28 H 1.07994 * 126.75242 * 180.22798 * 6 5 4 29 29 H 1.08997 * 109.46756 * 155.91908 * 8 7 3 30 30 H 1.09000 * 109.47220 * 35.91621 * 8 7 3 31 31 H 1.09007 * 109.46997 * 309.99689 * 10 9 8 32 32 H 1.08996 * 109.47320 * 69.99697 * 10 9 8 33 33 H 0.96997 * 120.00617 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47140 * 49.87957 * 19 9 8 35 35 H 1.08999 * 109.47566 * 169.87813 * 19 9 8 36 36 H 1.09003 * 109.46640 * 186.94137 * 20 19 9 37 37 H 1.08991 * 109.47331 * 306.94252 * 20 19 9 38 38 H 1.09000 * 109.47210 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47453 * 300.00017 * 22 21 20 40 40 H 1.09000 * 109.46837 * 60.00476 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2702 2.0921 -1.0431 5 7 2.6833 3.2596 -0.6953 6 6 2.7031 3.3317 0.6404 7 6 2.2826 2.1288 1.0965 8 6 2.1327 1.7086 2.5360 9 7 0.7400 1.9038 2.9606 10 6 0.5268 1.3884 4.3196 11 6 -0.9484 1.3790 4.6275 12 1 -1.6566 1.7220 3.8879 13 6 -1.3938 0.9325 5.8536 14 7 -2.6811 0.9247 6.1226 15 14 -0.1687 0.3399 7.1332 16 1 0.2534 1.4834 7.9814 17 1 -0.8042 -0.6988 7.9833 18 1 1.0186 -0.2362 6.4523 19 6 0.3545 3.3182 2.8675 20 6 1.0860 4.1182 3.9472 21 8 2.4867 4.1297 3.6648 22 6 3.2660 4.8551 4.6179 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.9988 4.1817 1.2373 29 1 2.7910 2.3120 3.1609 30 1 2.3993 0.6565 2.6370 31 1 0.9189 0.3736 4.3890 32 1 1.0435 2.0273 5.0357 33 1 -2.9945 0.6103 6.9850 34 1 0.6236 3.7042 1.8842 35 1 -0.7217 3.4119 3.0124 36 1 0.7095 5.1411 3.9592 37 1 0.9153 3.6567 4.9197 38 1 4.3174 4.8158 4.3329 39 1 2.9347 5.8932 4.6435 40 1 3.1405 4.4091 5.6045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651831592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:34 Heat of formation + Delta-G solvation = 66.108928 kcal Electronic energy + Delta-G solvation = -21902.204686 eV Core-core repulsion = 18755.234544 eV Total energy + Delta-G solvation = -3146.970141 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.90246 -38.52296 -36.21396 -35.09240 -32.75999 -31.39017 -30.37941 -29.32421 -27.76913 -26.30301 -24.55628 -24.02655 -22.86935 -22.03846 -20.42463 -19.31828 -17.03174 -16.90730 -16.35471 -16.17928 -15.86587 -15.19450 -14.69381 -14.32552 -14.20810 -13.93500 -13.66183 -13.38824 -12.73181 -12.54596 -12.38135 -11.99259 -11.84974 -11.65537 -11.63173 -11.38196 -11.26600 -11.10079 -10.84453 -10.73143 -10.50525 -10.26015 -9.97093 -9.71699 -9.47136 -9.20880 -8.76584 -8.67597 -7.45032 -6.16016 -4.14215 1.94869 2.70418 2.94444 3.17513 3.27101 3.27654 4.00954 4.30866 4.66620 4.73207 4.87072 5.06927 5.16296 5.22848 5.30630 5.38778 5.44357 5.50385 5.65988 5.71430 5.73830 5.75379 5.80530 5.81236 5.99134 6.13347 6.15579 6.35876 6.45588 6.56780 6.63709 6.76193 6.84683 6.97339 7.37092 7.46217 7.76027 7.86893 8.52710 8.88413 8.92458 9.45205 10.96835 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.007186 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.913251 B = 3895.735441 C = 4902.276262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.280 5.280 4 N -0.104 5.104 5 N -0.283 5.283 6 C -0.048 4.048 7 C 0.016 3.984 8 C 0.108 3.892 9 N -0.517 5.517 10 C 0.158 3.842 11 C -0.510 4.510 12 H 0.081 0.919 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.871 3.129 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.067 3.933 20 C 0.020 3.980 21 O -0.387 6.387 22 C 0.028 3.972 23 H 0.092 0.908 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.187 0.813 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.027 0.973 32 H -0.006 1.006 33 H 0.264 0.736 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.323 1.586 -5.200 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.004 4.004 3 N -0.075 5.075 4 N -0.083 5.083 5 N -0.148 5.148 6 C -0.206 4.206 7 C -0.117 4.117 8 C -0.021 4.021 9 N -0.240 5.240 10 C 0.033 3.967 11 C -0.548 4.548 12 H 0.099 0.901 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.699 3.301 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.191 1.191 19 C -0.062 4.062 20 C -0.058 4.058 21 O -0.306 6.306 22 C -0.069 4.069 23 H 0.111 0.889 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.204 0.796 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.045 0.955 32 H 0.012 0.988 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.968 1.167 -7.106 12.297 hybrid contribution 0.845 0.141 2.904 3.027 sum 10.813 1.308 -4.202 11.675 Atomic orbital electron populations 1.22181 0.92404 1.03682 1.04745 1.21993 0.97113 0.76673 1.04619 1.47363 1.42137 1.13452 1.04540 1.78181 1.18366 0.99470 1.12262 1.75008 1.16390 1.10582 1.12869 1.23395 1.07355 0.98435 0.91419 1.22224 1.04827 0.92908 0.91789 1.20867 0.93151 1.00937 0.87193 1.62207 1.17389 1.16409 1.27990 1.20279 0.98260 0.94490 0.83712 1.20980 0.90102 1.43177 1.00566 0.90130 1.24876 0.94894 0.95350 0.97990 1.69878 1.13144 1.47366 1.23218 0.86931 0.81990 0.79091 0.82125 1.20420 1.21134 1.19138 1.22210 1.00285 0.86907 0.96791 1.23491 0.80421 0.99840 1.02037 1.87882 1.18936 1.73698 1.50083 1.22692 0.95969 0.95286 0.92907 0.88888 0.92230 0.90373 0.88604 0.88124 0.79575 0.89313 0.91029 0.95457 0.98835 0.92582 0.91419 0.88366 0.93737 0.91214 0.90194 0.94457 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.12 1.42 6.90 -4.04 -0.03 1.39 16 3 N -0.28 -4.34 3.34 -57.05 -0.19 -4.53 16 4 N -0.10 -1.81 13.17 60.35 0.79 -1.02 16 5 N -0.28 -5.09 12.41 30.23 0.38 -4.71 16 6 C -0.05 -0.78 10.50 -17.73 -0.19 -0.96 16 7 C 0.02 0.25 5.56 -82.09 -0.46 -0.21 16 8 C 0.11 1.72 4.78 -4.97 -0.02 1.69 16 9 N -0.52 -9.50 4.63 -237.51 -1.10 -10.60 16 10 C 0.16 3.40 3.43 -4.98 -0.02 3.38 16 11 C -0.51 -13.13 9.15 -34.44 -0.32 -13.45 16 12 H 0.08 2.28 7.34 -52.49 -0.39 1.90 16 13 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -25.99 13.96 55.43 0.77 -25.22 16 15 Si 0.87 20.08 27.47 -169.99 -4.67 15.41 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -5.86 6.54 56.52 0.37 -5.50 16 19 C 0.07 1.17 5.46 -3.82 -0.02 1.15 16 20 C 0.02 0.32 5.69 37.16 0.21 0.53 16 21 O -0.39 -5.60 6.40 -35.23 -0.23 -5.82 16 22 C 0.03 0.33 11.01 101.05 1.11 1.44 16 23 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.10 1.10 7.25 -51.93 -0.38 0.73 16 28 H 0.19 2.75 7.10 -52.49 -0.37 2.38 16 29 H 0.09 1.41 5.22 -51.93 -0.27 1.14 16 30 H 0.07 1.07 7.23 -51.93 -0.38 0.70 16 31 H 0.03 0.60 7.05 -51.93 -0.37 0.23 16 32 H -0.01 -0.12 5.14 -51.93 -0.27 -0.39 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.17 5.88 -51.93 -0.31 0.86 16 35 H 0.10 1.90 7.04 -51.93 -0.37 1.54 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.27 5.80 -51.93 -0.30 0.97 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 318.73 15.07 4.80 4.80 Total: -1.00 -29.70 318.73 -4.81 -34.51 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.93 Total: 2.22 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 0.56 Total: -5.04 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.65 Total: -46.08 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.23 Total: -5.82 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.67 Total: 15.41 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.70 -4.81 -34.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651831592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.623 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds