Wall clock time and date at job start Mon Mar 30 2020 00:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47037 * 2 1 4 4 N 1.28722 * 125.86706 * 269.96873 * 3 2 1 5 5 N 1.28637 * 110.17715 * 180.02562 * 4 3 2 6 6 C 1.33777 * 108.88727 * 359.77270 * 5 4 3 7 7 C 1.35312 * 125.87347 * 89.99904 * 3 2 1 8 8 C 1.50706 * 126.90801 * 359.94119 * 7 3 2 9 9 N 1.46899 * 109.47139 * 275.91785 * 8 7 3 10 10 C 1.46900 * 111.00086 * 174.72075 * 9 8 7 11 11 C 1.50700 * 109.46927 * 190.00216 * 10 9 8 12 12 H 1.07996 * 120.00288 * 359.97438 * 11 10 9 13 13 C 1.37882 * 119.99792 * 179.97438 * 11 10 9 14 14 N 1.31511 * 120.00141 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99975 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47283 * 89.99864 * 15 13 11 17 17 H 1.48503 * 109.47119 * 210.00008 * 15 13 11 18 18 H 1.48497 * 109.47124 * 329.99770 * 15 13 11 19 19 C 1.46900 * 111.00117 * 298.67626 * 9 8 7 20 20 C 1.53004 * 109.46734 * 289.87635 * 19 9 8 21 21 O 1.42894 * 109.47095 * 66.94602 * 20 19 9 22 22 C 1.42898 * 114.00082 * 179.97438 * 21 20 19 23 23 H 1.08997 * 109.47252 * 300.00249 * 1 2 3 24 24 H 1.09000 * 109.46865 * 60.00249 * 1 2 3 25 25 H 1.09003 * 109.46866 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47252 * 239.99751 * 2 1 3 27 27 H 1.09004 * 109.47309 * 119.99600 * 2 1 3 28 28 H 1.07994 * 126.75242 * 180.22798 * 6 5 4 29 29 H 1.08997 * 109.46756 * 155.91908 * 8 7 3 30 30 H 1.09000 * 109.47220 * 35.91621 * 8 7 3 31 31 H 1.09007 * 109.46997 * 309.99689 * 10 9 8 32 32 H 1.08996 * 109.47320 * 69.99697 * 10 9 8 33 33 H 0.96997 * 120.00617 * 179.97438 * 14 13 11 34 34 H 1.09000 * 109.47140 * 49.87957 * 19 9 8 35 35 H 1.08999 * 109.47566 * 169.87813 * 19 9 8 36 36 H 1.09003 * 109.46640 * 186.94137 * 20 19 9 37 37 H 1.08991 * 109.47331 * 306.94252 * 20 19 9 38 38 H 1.09000 * 109.47210 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47453 * 300.00017 * 22 21 20 40 40 H 1.09000 * 109.46837 * 60.00476 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2702 2.0921 -1.0431 5 7 2.6833 3.2596 -0.6953 6 6 2.7031 3.3317 0.6404 7 6 2.2826 2.1288 1.0965 8 6 2.1327 1.7086 2.5360 9 7 0.7400 1.9038 2.9606 10 6 0.5268 1.3884 4.3196 11 6 -0.9484 1.3790 4.6275 12 1 -1.6566 1.7220 3.8879 13 6 -1.3938 0.9325 5.8536 14 7 -2.6811 0.9247 6.1226 15 14 -0.1687 0.3399 7.1332 16 1 0.2534 1.4834 7.9814 17 1 -0.8042 -0.6988 7.9833 18 1 1.0186 -0.2362 6.4523 19 6 0.3545 3.3182 2.8675 20 6 1.0860 4.1182 3.9472 21 8 2.4867 4.1297 3.6648 22 6 3.2660 4.8551 4.6179 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 2.9988 4.1817 1.2373 29 1 2.7910 2.3120 3.1609 30 1 2.3993 0.6565 2.6370 31 1 0.9189 0.3736 4.3890 32 1 1.0435 2.0273 5.0357 33 1 -2.9945 0.6103 6.9850 34 1 0.6236 3.7042 1.8842 35 1 -0.7217 3.4119 3.0124 36 1 0.7095 5.1411 3.9592 37 1 0.9153 3.6567 4.9197 38 1 4.3174 4.8158 4.3329 39 1 2.9347 5.8932 4.6435 40 1 3.1405 4.4091 5.6045 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651831592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:33 Heat of formation + Delta-G solvation = 44.613182 kcal Electronic energy + Delta-G solvation = -21903.136811 eV Core-core repulsion = 18755.234544 eV Total energy + Delta-G solvation = -3147.902267 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.16116 -39.84822 -37.50714 -36.24450 -34.69953 -32.80005 -31.52503 -30.78352 -29.39959 -27.34926 -25.92214 -25.18296 -24.49022 -23.28391 -21.87204 -20.66910 -18.88531 -18.18858 -17.65524 -17.42123 -17.09528 -16.65419 -15.88203 -15.79372 -15.71163 -15.28211 -14.82505 -14.59799 -14.46282 -13.80214 -13.61368 -13.38673 -13.21535 -13.04309 -12.87420 -12.76735 -12.57221 -12.44695 -12.32044 -12.04619 -11.86907 -11.77933 -11.63557 -11.37989 -10.94580 -10.76060 -10.42793 -10.05371 -8.91131 -8.22732 -6.25141 0.68640 1.37320 1.40313 1.49416 1.57930 1.66126 2.37738 2.85621 3.11642 3.33731 3.55888 3.74154 4.04937 4.07190 4.17016 4.26197 4.32727 4.34170 4.44707 4.58801 4.59849 4.61706 4.64131 4.73295 4.83449 4.89715 4.97397 5.07291 5.09074 5.16048 5.22606 5.35591 5.40359 5.59597 5.78338 6.00597 6.24558 6.32542 6.65789 6.82366 7.38337 7.60394 8.93626 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.017741 B = 0.007186 C = 0.005710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.913251 B = 3895.735441 C = 4902.276262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.275 5.275 4 N -0.119 5.119 5 N -0.308 5.308 6 C -0.046 4.046 7 C 0.013 3.987 8 C 0.116 3.884 9 N -0.524 5.524 10 C 0.171 3.829 11 C -0.505 4.505 12 H 0.039 0.961 13 C 0.012 3.988 14 N -0.949 5.949 15 Si 0.937 3.063 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.243 1.243 19 C 0.072 3.928 20 C 0.032 3.968 21 O -0.391 6.391 22 C 0.023 3.977 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.117 0.883 28 H 0.200 0.800 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.033 0.967 32 H 0.002 0.998 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.103 0.897 39 H 0.048 0.952 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.892 1.062 -4.890 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.010 4.010 3 N -0.070 5.070 4 N -0.098 5.098 5 N -0.173 5.173 6 C -0.205 4.205 7 C -0.121 4.121 8 C -0.013 4.013 9 N -0.248 5.248 10 C 0.044 3.956 11 C -0.543 4.543 12 H 0.057 0.943 13 C -0.185 4.185 14 N -0.590 5.590 15 Si 0.761 3.239 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.166 1.166 19 C -0.057 4.057 20 C -0.046 4.046 21 O -0.311 6.311 22 C -0.074 4.074 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.120 0.880 26 H 0.140 0.860 27 H 0.136 0.864 28 H 0.216 0.784 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.019 0.981 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.121 0.879 39 H 0.066 0.934 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.563 0.647 -6.830 14.314 hybrid contribution 0.005 0.347 2.720 2.742 sum 12.568 0.994 -4.110 13.260 Atomic orbital electron populations 1.22092 0.93037 1.04566 1.02573 1.22335 0.96462 0.75402 1.06800 1.47646 1.41074 1.14268 1.04011 1.78130 1.19002 0.99702 1.12966 1.74984 1.17392 1.11122 1.13805 1.23640 1.06873 0.98947 0.91008 1.22215 1.05036 0.92993 0.91832 1.20837 0.91368 1.02014 0.87122 1.62064 1.19569 1.16886 1.26256 1.20012 0.95087 0.95001 0.85490 1.21184 0.91969 1.41700 0.99454 0.94316 1.25734 0.96593 0.95781 1.00434 1.70043 1.15586 1.49418 1.23983 0.85866 0.80106 0.78638 0.79248 1.19626 1.21500 1.16613 1.22036 0.98929 0.87053 0.97664 1.23183 0.81646 0.99943 0.99868 1.87843 1.17833 1.74409 1.50967 1.22906 0.96709 0.95501 0.92236 0.92323 0.92974 0.88023 0.85980 0.86449 0.78351 0.88615 0.89588 0.94921 0.98092 0.92684 0.90960 0.91259 0.92445 0.93353 0.87860 0.93373 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.24 71.98 0.74 -3.28 16 2 C 0.11 2.41 6.90 86.38 0.60 3.00 16 3 N -0.27 -8.02 3.34 -334.40 -1.12 -9.14 16 4 N -0.12 -4.01 13.17 37.02 0.49 -3.52 16 5 N -0.31 -10.73 12.41 -58.26 -0.72 -11.45 16 6 C -0.05 -1.42 10.50 83.73 0.88 -0.54 16 7 C 0.01 0.39 5.56 41.36 0.23 0.62 16 8 C 0.12 3.40 4.78 85.56 0.41 3.81 16 9 N -0.52 -18.85 4.63 -905.35 -4.19 -23.04 16 10 C 0.17 7.11 3.43 85.56 0.29 7.41 16 11 C -0.50 -26.44 9.15 25.60 0.23 -26.21 16 12 H 0.04 2.31 7.34 -2.91 -0.02 2.28 16 13 C 0.01 0.64 5.47 84.66 0.46 1.10 16 14 N -0.95 -56.52 13.96 21.45 0.30 -56.22 16 15 Si 0.94 40.72 27.47 68.60 1.88 42.61 16 16 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 18 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 19 C 0.07 2.52 5.46 86.30 0.47 2.99 16 20 C 0.03 0.98 5.69 71.98 0.41 1.39 16 21 O -0.39 -10.36 6.40 -148.98 -0.95 -11.31 16 22 C 0.02 0.46 11.01 113.37 1.25 1.70 16 23 H 0.06 1.86 8.04 -2.39 -0.02 1.84 16 24 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.12 2.21 7.25 -2.38 -0.02 2.19 16 28 H 0.20 5.43 7.10 -2.91 -0.02 5.41 16 29 H 0.10 2.75 5.22 -2.39 -0.01 2.74 16 30 H 0.09 2.30 7.23 -2.39 -0.02 2.28 16 31 H 0.03 1.35 7.05 -2.38 -0.02 1.33 16 32 H 0.00 0.06 5.14 -2.39 -0.01 0.05 16 33 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 34 H 0.07 2.46 5.88 -2.39 -0.01 2.45 16 35 H 0.07 2.82 7.04 -2.39 -0.02 2.80 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.05 1.72 5.80 -2.39 -0.01 1.71 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -65.00 318.73 2.63 -62.37 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.98 Total: 17.71 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.97 Total: -8.00 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -5.25 Total: -103.38 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -0.95 Total: -11.31 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.61 kcal Total: -65.00 2.63 -62.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651831592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.980 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds