Wall clock time and date at job start Mon Mar 30 2020 01:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47752 * 2 1 4 4 N 1.46894 * 109.47248 * 306.31232 * 3 2 1 5 5 C 1.46904 * 111.00144 * 162.40539 * 4 3 2 6 6 C 1.53234 * 109.34074 * 187.25350 * 5 4 3 7 7 N 1.47081 * 108.52465 * 306.17047 * 6 5 4 8 8 C 1.36936 * 120.88138 * 231.19221 * 7 6 5 9 9 H 1.07994 * 120.00306 * 26.40564 * 8 7 6 10 10 C 1.38814 * 119.99653 * 206.13278 * 8 7 6 11 11 N 1.31617 * 120.00119 * 18.08092 * 10 8 7 12 12 Si 1.86799 * 119.99913 * 198.08866 * 10 8 7 13 13 H 1.48505 * 109.47261 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47434 * 119.99426 * 12 10 8 15 15 H 1.48503 * 109.47017 * 240.00029 * 12 10 8 16 16 C 1.47080 * 118.23561 * 51.45787 * 7 6 5 17 17 C 1.46902 * 111.00321 * 286.70629 * 4 3 2 18 18 C 1.53089 * 109.48959 * 120.02824 * 2 1 3 19 19 C 1.53179 * 109.16319 * 62.37963 * 18 2 1 20 20 C 1.53181 * 109.03492 * 56.98062 * 19 18 2 21 21 C 1.53092 * 109.16266 * 303.02030 * 20 19 18 22 22 O 1.42896 * 109.41798 * 57.60626 * 21 20 19 23 23 H 1.09001 * 109.46998 * 59.99598 * 1 2 3 24 24 H 1.08994 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46971 * 299.99959 * 1 2 3 26 26 H 1.09000 * 109.46690 * 186.31078 * 3 2 1 27 27 H 1.09001 * 109.47118 * 66.31436 * 3 2 1 28 28 H 1.09004 * 109.48669 * 67.29324 * 5 4 3 29 29 H 1.09001 * 109.49216 * 307.21690 * 5 4 3 30 30 H 1.09004 * 109.62879 * 186.46195 * 6 5 4 31 31 H 1.08992 * 109.78997 * 65.97698 * 6 5 4 32 32 H 0.96998 * 119.99989 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.63314 * 68.25324 * 16 7 6 34 34 H 1.09001 * 109.62670 * 188.83980 * 16 7 6 35 35 H 1.08997 * 109.49434 * 292.70979 * 17 4 3 36 36 H 1.09000 * 109.48849 * 52.78397 * 17 4 3 37 37 H 1.08996 * 109.52292 * 182.28750 * 18 2 1 38 38 H 1.09004 * 109.52308 * 302.47658 * 18 2 1 39 39 H 1.08999 * 109.54398 * 297.11611 * 19 18 2 40 40 H 1.08995 * 109.61746 * 176.88880 * 19 18 2 41 41 H 1.09000 * 109.52160 * 183.11707 * 20 19 18 42 42 H 1.09000 * 109.51994 * 62.92453 * 20 19 18 43 43 H 1.09008 * 109.47895 * 297.62283 * 21 20 19 44 44 H 1.08996 * 109.48908 * 177.60110 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 7 1.4303 2.1776 -1.1160 5 6 1.5510 3.6284 -0.9193 6 6 0.7498 4.3560 -2.0040 7 7 1.1926 3.8677 -3.3188 8 6 1.5607 4.7425 -4.3059 9 1 1.9394 5.7202 -4.0474 10 6 1.4525 4.3703 -5.6389 11 7 0.6865 3.3553 -5.9786 12 14 2.3940 5.3099 -6.9504 13 1 3.1766 6.3993 -6.3131 14 1 3.3166 4.3847 -7.6560 15 1 1.4370 5.8931 -7.9246 16 6 1.2240 2.4151 -3.5472 17 6 2.0122 1.7637 -2.3997 18 6 2.0408 -0.7222 1.2495 19 6 1.5762 -2.1814 1.2121 20 6 2.0770 -2.8321 -0.0811 21 6 1.5648 -2.0284 -1.2791 22 8 2.0065 -0.6741 -1.1665 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.1244 1.4443 -0.1130 27 1 1.7722 1.9227 0.9411 28 1 2.5997 3.9183 -0.9856 29 1 1.1606 3.8961 0.0626 30 1 0.9278 5.4290 -1.9330 31 1 -0.3133 4.1521 -1.8768 32 1 0.6106 3.0955 -6.9101 33 1 0.2064 2.0250 -3.5640 34 1 1.7158 2.2043 -4.4968 35 1 3.0544 2.0796 -2.4454 36 1 1.9563 0.6790 -2.4915 37 1 3.1300 -0.6872 1.2708 38 1 1.6423 -0.2358 2.1399 39 1 0.4872 -2.2181 1.2408 40 1 1.9819 -2.7167 2.0704 41 1 1.7043 -3.8546 -0.1423 42 1 3.1669 -2.8397 -0.0866 43 1 0.4752 -2.0551 -1.2958 44 1 1.9531 -2.4620 -2.2007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657188775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:50 Heat of formation + Delta-G solvation = -18.697846 kcal Electronic energy + Delta-G solvation = -22315.131326 eV Core-core repulsion = 19268.024030 eV Total energy + Delta-G solvation = -3047.107296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.01377 -37.62936 -34.53712 -33.66936 -32.44767 -30.79051 -29.69342 -28.00931 -27.14489 -24.90118 -23.95261 -22.58652 -22.33845 -21.09843 -19.06471 -18.93456 -16.66563 -16.17474 -15.96710 -15.10870 -14.81665 -14.65532 -14.28888 -14.01596 -13.67281 -13.38611 -13.14883 -13.07881 -12.74928 -12.56412 -12.25308 -11.98063 -11.65631 -11.47006 -11.23304 -11.07113 -10.98959 -10.94335 -10.68512 -10.66212 -10.37903 -10.14476 -10.01338 -9.92506 -9.60824 -9.52200 -8.96516 -8.41306 -7.62865 -6.56583 -5.69417 -3.09078 3.42317 3.49844 3.52194 3.89834 4.39833 4.57787 4.76050 4.76900 4.84372 5.09754 5.17754 5.26403 5.45064 5.47442 5.51910 5.60189 5.63478 5.71561 5.74290 5.81624 5.87279 5.92709 5.94248 6.05845 6.10054 6.13504 6.18751 6.25688 6.29234 6.51432 6.57137 6.70231 6.76589 7.02213 7.03056 7.40528 7.48802 7.78198 7.80592 7.85547 7.97180 8.52874 9.30727 9.94941 10.53635 11.39085 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031933 B = 0.004911 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.613318 B = 5699.954717 C = 6187.763670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.123 3.877 3 C 0.068 3.932 4 N -0.526 5.526 5 C 0.043 3.957 6 C 0.150 3.850 7 N -0.597 5.597 8 C -0.249 4.249 9 H 0.065 0.935 10 C 0.000 4.000 11 N -0.903 5.903 12 Si 0.899 3.101 13 H -0.279 1.279 14 H -0.289 1.289 15 H -0.291 1.291 16 C 0.179 3.821 17 C 0.028 3.972 18 C -0.142 4.142 19 C -0.121 4.121 20 C -0.155 4.155 21 C 0.054 3.946 22 O -0.360 6.360 23 H 0.083 0.917 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.025 0.975 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.023 0.977 32 H 0.252 0.748 33 H 0.023 0.977 34 H 0.085 0.915 35 H 0.017 0.983 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.053 0.947 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -10.875 14.657 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.084 3.916 3 C -0.061 4.061 4 N -0.250 5.250 5 C -0.086 4.086 6 C 0.023 3.977 7 N -0.320 5.320 8 C -0.379 4.379 9 H 0.083 0.917 10 C -0.198 4.198 11 N -0.548 5.548 12 Si 0.730 3.270 13 H -0.204 1.204 14 H -0.216 1.216 15 H -0.218 1.218 16 C 0.054 3.946 17 C -0.100 4.100 18 C -0.180 4.180 19 C -0.158 4.158 20 C -0.192 4.192 21 C -0.023 4.023 22 O -0.280 6.280 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.103 0.897 35 H 0.035 0.965 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.176 -10.922 14.329 18.055 hybrid contribution 1.204 0.442 -0.445 1.358 sum 2.381 -10.481 13.883 17.557 Atomic orbital electron populations 1.22252 0.95007 1.01003 1.03946 1.21474 0.93989 0.91534 0.84643 1.22062 0.96798 0.91783 0.95442 1.61946 1.56503 1.04514 1.02026 1.22620 0.98833 0.88096 0.99087 1.20939 0.95322 0.95619 0.85794 1.44188 1.76348 1.02040 1.09421 1.19238 1.35237 0.97801 0.85597 0.91750 1.24978 0.98795 0.98781 0.97246 1.70056 1.38275 1.30063 1.16367 0.86264 0.79605 0.79212 0.81963 1.20379 1.21628 1.21803 1.20959 0.96776 0.82122 0.94779 1.23266 0.95977 1.01220 0.89546 1.22150 1.01466 0.95937 0.98492 1.21589 1.01089 0.95625 0.97523 1.22180 1.01706 0.99405 0.95946 1.22553 0.98965 0.83015 0.97737 1.88065 1.73634 1.23580 1.42682 0.89788 0.93264 0.92414 0.94835 0.90585 0.95684 0.92390 0.92913 0.95861 0.93789 0.95912 0.89679 0.96502 0.88967 0.91478 0.91168 0.91575 0.92020 0.91389 0.91403 0.92872 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 7.71 37.16 0.29 -1.90 16 2 C 0.12 1.66 0.85 -90.57 -0.08 1.58 16 3 C 0.07 1.03 4.34 -3.83 -0.02 1.01 16 4 N -0.53 -9.72 3.54 -234.02 -0.83 -10.54 16 5 C 0.04 0.81 5.60 -3.70 -0.02 0.79 16 6 C 0.15 3.32 6.69 -3.60 -0.02 3.30 16 7 N -0.60 -15.75 3.03 -171.74 -0.52 -16.27 16 8 C -0.25 -7.10 9.63 -15.06 -0.15 -7.25 16 9 H 0.06 1.80 7.89 -52.49 -0.41 1.39 16 10 C 0.00 0.00 4.91 -17.43 -0.09 -0.08 16 11 N -0.90 -27.00 11.17 55.49 0.62 -26.38 16 12 Si 0.90 22.26 29.59 -169.99 -5.03 17.23 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 16 C 0.18 4.56 5.46 -3.36 -0.02 4.54 16 17 C 0.03 0.60 5.38 -3.46 -0.02 0.58 16 18 C -0.14 -1.53 4.92 -26.59 -0.13 -1.66 16 19 C -0.12 -1.14 5.72 -26.55 -0.15 -1.29 16 20 C -0.15 -1.51 6.14 -26.59 -0.16 -1.67 16 21 C 0.05 0.65 6.52 37.21 0.24 0.89 16 22 O -0.36 -5.43 7.16 -35.23 -0.25 -5.68 16 23 H 0.08 1.37 7.44 -51.93 -0.39 0.98 16 24 H 0.05 0.58 4.98 -51.93 -0.26 0.32 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.03 0.53 8.03 -51.93 -0.42 0.12 16 27 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.92 7.91 -51.93 -0.41 0.51 16 30 H 0.05 1.12 7.95 -51.93 -0.41 0.71 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 2.40 6.10 -51.93 -0.32 2.08 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 1.88 5.00 -51.93 -0.26 1.62 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.61 6.62 -51.93 -0.34 0.27 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.62 6.34 -51.92 -0.33 0.29 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -30.64 323.61 -9.20 -39.83 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.74 Total: -1.90 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.32 Total: -1.17 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.73 Total: -53.20 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.25 Total: -5.68 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.64 -9.20 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657188775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.136 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds