Wall clock time and date at job start Mon Mar 30 2020 01:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47752 * 2 1 4 4 N 1.46894 * 109.47248 * 306.31232 * 3 2 1 5 5 C 1.46904 * 111.00144 * 162.40539 * 4 3 2 6 6 C 1.53234 * 109.34074 * 187.25350 * 5 4 3 7 7 N 1.47081 * 108.52465 * 306.17047 * 6 5 4 8 8 C 1.36936 * 120.88138 * 231.19221 * 7 6 5 9 9 H 1.07994 * 120.00306 * 26.40564 * 8 7 6 10 10 C 1.38814 * 119.99653 * 206.13278 * 8 7 6 11 11 N 1.31617 * 120.00119 * 18.08092 * 10 8 7 12 12 Si 1.86799 * 119.99913 * 198.08866 * 10 8 7 13 13 H 1.48505 * 109.47261 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47434 * 119.99426 * 12 10 8 15 15 H 1.48503 * 109.47017 * 240.00029 * 12 10 8 16 16 C 1.47080 * 118.23561 * 51.45787 * 7 6 5 17 17 C 1.46902 * 111.00321 * 286.70629 * 4 3 2 18 18 C 1.53089 * 109.48959 * 120.02824 * 2 1 3 19 19 C 1.53179 * 109.16319 * 62.37963 * 18 2 1 20 20 C 1.53181 * 109.03492 * 56.98062 * 19 18 2 21 21 C 1.53092 * 109.16266 * 303.02030 * 20 19 18 22 22 O 1.42896 * 109.41798 * 57.60626 * 21 20 19 23 23 H 1.09001 * 109.46998 * 59.99598 * 1 2 3 24 24 H 1.08994 * 109.47041 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46971 * 299.99959 * 1 2 3 26 26 H 1.09000 * 109.46690 * 186.31078 * 3 2 1 27 27 H 1.09001 * 109.47118 * 66.31436 * 3 2 1 28 28 H 1.09004 * 109.48669 * 67.29324 * 5 4 3 29 29 H 1.09001 * 109.49216 * 307.21690 * 5 4 3 30 30 H 1.09004 * 109.62879 * 186.46195 * 6 5 4 31 31 H 1.08992 * 109.78997 * 65.97698 * 6 5 4 32 32 H 0.96998 * 119.99989 * 179.97438 * 11 10 8 33 33 H 1.08995 * 109.63314 * 68.25324 * 16 7 6 34 34 H 1.09001 * 109.62670 * 188.83980 * 16 7 6 35 35 H 1.08997 * 109.49434 * 292.70979 * 17 4 3 36 36 H 1.09000 * 109.48849 * 52.78397 * 17 4 3 37 37 H 1.08996 * 109.52292 * 182.28750 * 18 2 1 38 38 H 1.09004 * 109.52308 * 302.47658 * 18 2 1 39 39 H 1.08999 * 109.54398 * 297.11611 * 19 18 2 40 40 H 1.08995 * 109.61746 * 176.88880 * 19 18 2 41 41 H 1.09000 * 109.52160 * 183.11707 * 20 19 18 42 42 H 1.09000 * 109.51994 * 62.92453 * 20 19 18 43 43 H 1.09008 * 109.47895 * 297.62283 * 21 20 19 44 44 H 1.08996 * 109.48908 * 177.60110 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 7 1.4303 2.1776 -1.1160 5 6 1.5510 3.6284 -0.9193 6 6 0.7498 4.3560 -2.0040 7 7 1.1926 3.8677 -3.3188 8 6 1.5607 4.7425 -4.3059 9 1 1.9394 5.7202 -4.0474 10 6 1.4525 4.3703 -5.6389 11 7 0.6865 3.3553 -5.9786 12 14 2.3940 5.3099 -6.9504 13 1 3.1766 6.3993 -6.3131 14 1 3.3166 4.3847 -7.6560 15 1 1.4370 5.8931 -7.9246 16 6 1.2240 2.4151 -3.5472 17 6 2.0122 1.7637 -2.3997 18 6 2.0408 -0.7222 1.2495 19 6 1.5762 -2.1814 1.2121 20 6 2.0770 -2.8321 -0.0811 21 6 1.5648 -2.0284 -1.2791 22 8 2.0065 -0.6741 -1.1665 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 3.1244 1.4443 -0.1130 27 1 1.7722 1.9227 0.9411 28 1 2.5997 3.9183 -0.9856 29 1 1.1606 3.8961 0.0626 30 1 0.9278 5.4290 -1.9330 31 1 -0.3133 4.1521 -1.8768 32 1 0.6106 3.0955 -6.9101 33 1 0.2064 2.0250 -3.5640 34 1 1.7158 2.2043 -4.4968 35 1 3.0544 2.0796 -2.4454 36 1 1.9563 0.6790 -2.4915 37 1 3.1300 -0.6872 1.2708 38 1 1.6423 -0.2358 2.1399 39 1 0.4872 -2.2181 1.2408 40 1 1.9819 -2.7167 2.0704 41 1 1.7043 -3.8546 -0.1423 42 1 3.1669 -2.8397 -0.0866 43 1 0.4752 -2.0551 -1.2958 44 1 1.9531 -2.4620 -2.2007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657188775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:49 Heat of formation + Delta-G solvation = -37.573099 kcal Electronic energy + Delta-G solvation = -22315.949818 eV Core-core repulsion = 19268.024030 eV Total energy + Delta-G solvation = -3047.925788 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07147 -39.24068 -36.25793 -34.59333 -33.91931 -32.51799 -31.52455 -29.04770 -28.71923 -26.46605 -24.98079 -24.27905 -24.03534 -22.24681 -20.77830 -19.97968 -18.69196 -17.30083 -17.06226 -16.80670 -16.24758 -15.89910 -15.58888 -15.36758 -15.20555 -15.02766 -14.90411 -14.55615 -13.96864 -13.68389 -13.56612 -13.16806 -13.07633 -12.88395 -12.81100 -12.59328 -12.41074 -12.24884 -12.02341 -12.00687 -11.87428 -11.81041 -11.63025 -11.50747 -11.38247 -10.81691 -10.58152 -10.08588 -9.17657 -8.67436 -7.87081 -5.31019 1.44821 1.46221 1.57320 2.50606 2.89426 3.04076 3.27861 3.73851 3.82030 3.98004 4.00174 4.11830 4.17044 4.33982 4.39054 4.40854 4.48189 4.55684 4.62258 4.68204 4.70865 4.79117 4.79952 4.87113 4.94054 5.02429 5.03341 5.08868 5.12081 5.17236 5.17755 5.21968 5.35405 5.38302 5.51182 5.60348 5.65624 5.69853 6.25082 6.33254 6.38648 6.52715 7.13429 7.85096 8.39600 9.19776 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031933 B = 0.004911 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.613318 B = 5699.954717 C = 6187.763670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.120 3.880 3 C 0.067 3.933 4 N -0.529 5.529 5 C 0.053 3.947 6 C 0.145 3.855 7 N -0.616 5.616 8 C -0.265 4.265 9 H 0.067 0.933 10 C -0.053 4.053 11 N -0.936 5.936 12 Si 0.968 3.032 13 H -0.267 1.267 14 H -0.290 1.290 15 H -0.290 1.290 16 C 0.191 3.809 17 C 0.051 3.949 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.149 4.149 21 C 0.047 3.953 22 O -0.392 6.392 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.104 0.896 28 H 0.018 0.982 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.250 0.750 33 H -0.006 1.006 34 H 0.050 0.950 35 H 0.001 0.999 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -11.306 16.971 20.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.081 3.919 3 C -0.060 4.060 4 N -0.253 5.253 5 C -0.076 4.076 6 C 0.019 3.981 7 N -0.340 5.340 8 C -0.395 4.395 9 H 0.085 0.915 10 C -0.248 4.248 11 N -0.583 5.583 12 Si 0.796 3.204 13 H -0.191 1.191 14 H -0.217 1.217 15 H -0.217 1.217 16 C 0.065 3.935 17 C -0.078 4.078 18 C -0.174 4.174 19 C -0.156 4.156 20 C -0.187 4.187 21 C -0.029 4.029 22 O -0.312 6.312 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.045 0.955 27 H 0.122 0.878 28 H 0.036 0.964 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.012 0.988 34 H 0.069 0.931 35 H 0.019 0.981 36 H 0.118 0.882 37 H 0.082 0.918 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.746 -11.349 16.685 20.254 hybrid contribution 0.972 0.570 -1.136 1.600 sum 2.718 -10.780 15.549 19.114 Atomic orbital electron populations 1.22170 0.94957 1.01590 1.02803 1.21558 0.93952 0.90812 0.85598 1.22220 0.96225 0.92754 0.94847 1.61893 1.56758 1.04781 1.01894 1.22503 0.97852 0.87840 0.99454 1.21118 0.95419 0.96574 0.84984 1.44468 1.76799 1.02098 1.10607 1.19591 1.35123 0.98246 0.86535 0.91494 1.25787 0.99682 0.99982 0.99314 1.70217 1.39716 1.31785 1.16534 0.85197 0.78113 0.78074 0.79007 1.19089 1.21673 1.21662 1.20669 0.95275 0.82452 0.95139 1.22869 0.94048 1.01093 0.89780 1.22100 1.01285 0.96663 0.97394 1.21610 1.01426 0.94771 0.97838 1.22136 1.01438 1.00005 0.95094 1.22706 0.99010 0.82071 0.99091 1.87974 1.74141 1.25238 1.43848 0.93395 0.91906 0.90920 0.95548 0.87796 0.96399 0.88423 0.92243 0.96600 0.94112 0.98754 0.93140 0.98100 0.88246 0.91760 0.89364 0.91125 0.90119 0.89503 0.91784 0.92943 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 7.71 71.98 0.55 -3.36 16 2 C 0.12 3.00 0.85 -10.76 -0.01 2.99 16 3 C 0.07 1.89 4.34 86.31 0.37 2.27 16 4 N -0.53 -19.15 3.54 -894.31 -3.17 -22.32 16 5 C 0.05 1.89 5.60 86.38 0.48 2.37 16 6 C 0.14 6.40 6.69 86.35 0.58 6.98 16 7 N -0.62 -33.32 3.03 -697.26 -2.11 -35.43 16 8 C -0.26 -15.39 9.63 84.03 0.81 -14.58 16 9 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 10 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 11 N -0.94 -57.98 11.17 21.65 0.24 -57.74 16 12 Si 0.97 46.57 29.59 68.60 2.03 48.60 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 15 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 16 C 0.19 10.14 5.46 86.50 0.47 10.61 16 17 C 0.05 2.21 5.38 86.54 0.47 2.68 16 18 C -0.14 -2.50 4.92 30.68 0.15 -2.35 16 19 C -0.12 -1.84 5.72 30.71 0.18 -1.67 16 20 C -0.15 -2.56 6.14 30.69 0.19 -2.37 16 21 C 0.05 1.09 6.52 72.01 0.47 1.56 16 22 O -0.39 -11.55 7.16 -148.98 -1.07 -12.62 16 23 H 0.05 1.54 7.44 -2.39 -0.02 1.52 16 24 H 0.06 1.36 4.98 -2.39 -0.01 1.35 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.03 0.79 8.03 -2.39 -0.02 0.77 16 27 H 0.10 2.35 7.82 -2.39 -0.02 2.33 16 28 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.10 2.77 7.91 -2.39 -0.02 2.75 16 30 H 0.06 2.50 7.95 -2.38 -0.02 2.48 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.05 3.00 6.10 -2.39 -0.01 2.99 16 35 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.10 4.18 5.00 -2.39 -0.01 4.17 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.07 1.05 6.62 -2.39 -0.02 1.04 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.18 6.34 -2.38 -0.02 1.17 16 44 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -68.06 323.61 2.01 -66.05 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.95 Total: 10.98 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.13 Total: 2.47 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -5.04 Total: -115.49 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -1.07 Total: -12.62 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -68.06 2.01 -66.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657188775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.481 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds