Wall clock time and date at job start Mon Mar 30 2020 01:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46815 * 2 1 4 4 C 1.52996 * 109.47425 * 240.00127 * 2 1 3 5 5 C 1.50699 * 109.47047 * 59.99638 * 4 2 1 6 6 H 1.07999 * 120.00136 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00116 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00112 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00300 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47049 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47248 * 119.99830 * 9 7 5 12 12 H 1.48497 * 109.47294 * 240.00183 * 9 7 5 13 13 C 1.52998 * 109.47381 * 119.99837 * 2 1 3 14 14 N 1.46906 * 109.47020 * 300.00339 * 13 2 1 15 15 C 1.46902 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.53008 * 109.46622 * 179.97438 * 15 14 13 17 17 C 1.52997 * 110.21486 * 65.47802 * 16 15 14 18 18 C 1.54475 * 110.24153 * 187.49866 * 16 15 14 19 19 C 1.54628 * 101.76679 * 144.41596 * 18 16 15 20 20 C 1.51282 * 104.19255 * 335.20311 * 19 18 16 21 21 O 1.21284 * 124.94170 * 196.27489 * 20 19 18 22 22 N 1.34422 * 110.11897 * 16.24902 * 20 19 18 23 23 H 1.09002 * 109.47185 * 299.99381 * 1 2 3 24 24 H 1.08994 * 109.47063 * 60.00354 * 1 2 3 25 25 H 1.09008 * 109.46699 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46866 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46687 * 299.99989 * 3 2 1 28 28 H 1.09002 * 109.47213 * 60.00106 * 3 2 1 29 29 H 1.08993 * 109.47277 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47041 * 299.99763 * 4 2 1 31 31 H 0.96998 * 120.00461 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47142 * 180.02562 * 13 2 1 33 33 H 1.09000 * 109.46991 * 60.00294 * 13 2 1 34 34 H 1.00896 * 111.00309 * 56.04370 * 14 13 2 35 35 H 1.08990 * 109.47358 * 299.99539 * 15 14 13 36 36 H 1.09004 * 109.47457 * 60.00221 * 15 14 13 37 37 H 1.08997 * 109.47214 * 60.69697 * 17 16 15 38 38 H 1.09007 * 109.46707 * 180.69933 * 17 16 15 39 39 H 1.09000 * 109.47225 * 300.69624 * 17 16 15 40 40 H 1.09005 * 110.97031 * 262.53112 * 18 16 15 41 41 H 1.09003 * 110.97913 * 26.29918 * 18 16 15 42 42 H 1.08997 * 110.49349 * 216.52043 * 19 18 16 43 43 H 1.09004 * 110.59952 * 93.93219 * 19 18 16 44 44 H 0.96989 * 124.34951 * 180.43087 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 2.6257 -1.5519 -3.8526 9 14 1.2471 0.3980 -5.2572 10 1 0.4216 1.5643 -4.8530 11 1 2.4018 0.8646 -6.0660 12 1 0.4219 -0.5357 -6.0649 13 6 2.0401 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0210 -0.6952 3.6703 16 6 1.4923 0.0535 4.8956 17 6 -0.0326 -0.0515 4.9620 18 6 2.1259 -0.5159 6.1842 19 6 2.2761 0.7561 7.0504 20 6 2.3421 1.8842 6.0446 21 8 2.7347 3.0064 6.2842 22 7 1.9029 1.4616 4.8465 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 -1.2494 30 1 1.6768 -1.7489 -1.2492 31 1 2.8601 -1.8833 -4.7336 32 1 3.1301 -0.7208 1.2494 33 1 1.6768 -1.7489 1.2492 34 1 0.5438 0.0414 2.4402 35 1 1.6572 -1.7224 3.6869 36 1 3.1109 -0.6953 3.6873 37 1 -0.3214 -1.0993 5.0450 38 1 -0.3968 0.4958 5.8315 39 1 -0.4659 0.3742 4.0570 40 1 1.4607 -1.2360 6.6608 41 1 3.0980 -0.9632 5.9764 42 1 3.1944 0.7128 7.6360 43 1 1.4129 0.8786 7.7048 44 1 1.8628 2.0160 4.0517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657484357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:32 Heat of formation + Delta-G solvation = -60.359673 kcal Electronic energy + Delta-G solvation = -21209.714358 eV Core-core repulsion = 18160.800470 eV Total energy + Delta-G solvation = -3048.913888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.72657 -37.97643 -36.94242 -34.12826 -32.24436 -31.46474 -30.39611 -27.30247 -26.58428 -26.38412 -25.24735 -23.57600 -22.09456 -20.87962 -20.21865 -18.06969 -16.96988 -16.31169 -16.26865 -15.77885 -14.91676 -14.73521 -14.38120 -14.20575 -13.87300 -13.59511 -13.34784 -12.97653 -12.94811 -12.75685 -12.47416 -12.41561 -12.03265 -11.79109 -11.74378 -11.15401 -11.12706 -11.01357 -10.91633 -10.77845 -10.54160 -10.29202 -10.13780 -9.92814 -9.73378 -9.20181 -9.05315 -8.84751 -8.34369 -8.23571 -5.98694 -3.98887 2.53799 3.30416 3.30952 3.39069 3.42371 3.99125 4.18774 4.32312 4.46868 4.56090 4.79256 4.82021 5.02819 5.27658 5.36937 5.37482 5.41984 5.44720 5.58126 5.63766 5.66313 5.70025 5.72286 5.91266 5.97167 6.17648 6.26841 6.44477 6.59776 6.72393 6.78758 6.80501 7.06354 7.12952 7.16452 7.22219 7.31058 7.54344 7.67314 7.81702 8.01432 8.24427 8.45559 9.06733 9.64291 11.12989 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037974 B = 0.003543 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.167868 B = 7901.105524 C = 8103.261188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.116 4.116 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.071 3.929 14 N -0.688 5.688 15 C 0.055 3.945 16 C 0.158 3.842 17 C -0.160 4.160 18 C -0.124 4.124 19 C -0.156 4.156 20 C 0.515 3.485 21 O -0.544 6.544 22 N -0.704 5.704 23 H 0.032 0.968 24 H 0.064 0.936 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.055 0.945 28 H 0.041 0.959 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.339 0.661 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -0.772 19.954 20.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.057 4.057 14 N -0.321 5.321 15 C -0.076 4.076 16 C 0.070 3.930 17 C -0.218 4.218 18 C -0.162 4.162 19 C -0.196 4.196 20 C 0.301 3.699 21 O -0.422 6.422 22 N -0.360 5.360 23 H 0.050 0.950 24 H 0.083 0.917 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.159 0.841 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -3.144 0.099 20.038 20.283 hybrid contribution -0.856 -0.357 -1.401 1.680 sum -4.000 -0.258 18.636 19.063 Atomic orbital electron populations 1.21770 0.96094 1.00338 1.00393 1.20634 0.94689 0.96140 0.94416 1.21600 0.99824 0.95756 1.00148 1.19122 0.96126 0.94960 0.90185 1.21271 1.30773 1.11876 0.90600 0.92240 1.25014 0.95392 0.95104 0.99084 1.69971 1.37351 1.23203 1.23212 0.86611 0.78635 0.79724 0.83486 1.19767 1.21132 1.21191 1.22113 0.99854 0.94690 0.89090 1.60572 1.16470 1.53834 1.01207 1.22282 1.00896 0.95224 0.89172 1.21065 0.94649 0.81800 0.95485 1.22211 0.94147 1.02538 1.02948 1.22694 1.02387 0.97083 0.94061 1.22341 1.05070 0.93980 0.98254 1.20858 0.76065 0.88581 0.84392 1.90752 1.47998 1.21937 1.81493 1.46283 1.64468 1.12829 1.12398 0.94953 0.91660 0.94089 0.94142 0.92648 0.94025 0.96686 0.96924 0.93205 0.91494 0.95684 0.84122 0.94027 0.90427 0.91234 0.92017 0.91480 0.89127 0.89661 0.88242 0.88076 0.74075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.89 37.16 0.29 -1.97 16 2 C -0.06 -1.11 0.60 -154.51 -0.09 -1.20 16 3 C -0.12 -2.17 8.06 37.16 0.30 -1.87 16 4 C 0.03 0.82 4.04 -27.89 -0.11 0.71 16 5 C -0.51 -13.65 7.65 -34.44 -0.26 -13.91 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.07 1.12 4.65 -3.82 -0.02 1.10 16 14 N -0.69 -8.48 5.26 -113.77 -0.60 -9.08 16 15 C 0.05 0.54 4.84 -3.82 -0.02 0.52 16 16 C 0.16 1.30 0.96 -130.90 -0.13 1.18 16 17 C -0.16 -1.16 8.58 37.16 0.32 -0.84 16 18 C -0.12 -0.78 6.21 -25.10 -0.16 -0.94 16 19 C -0.16 -1.19 6.86 -26.74 -0.18 -1.38 16 20 C 0.52 6.19 8.43 -10.86 -0.09 6.10 16 21 O -0.54 -9.02 18.03 5.55 0.10 -8.92 16 22 N -0.70 -7.50 5.42 -46.61 -0.25 -7.76 16 23 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 24 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 25 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.05 1.12 6.62 -51.93 -0.34 0.78 16 28 H 0.04 0.69 7.60 -51.93 -0.39 0.29 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.34 3.99 5.10 -39.29 -0.20 3.79 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.83 8.04 -51.93 -0.42 0.41 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.54 6.73 -51.93 -0.35 0.20 16 40 H 0.09 0.40 7.90 -51.93 -0.41 -0.01 16 41 H 0.08 0.52 7.84 -51.93 -0.41 0.11 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.42 4.93 8.63 -40.82 -0.35 4.58 16 LS Contribution 342.26 15.07 5.16 5.16 Total: -1.00 -31.31 342.26 -7.77 -39.08 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.64 Total: 2.02 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.25 Total: -11.06 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.11 Total: -42.68 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.10 Total: -8.92 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.31 -7.77 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657484357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.282 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds