Wall clock time and date at job start Mon Mar 30 2020 01:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46815 * 2 1 4 4 C 1.52996 * 109.47425 * 240.00127 * 2 1 3 5 5 C 1.50699 * 109.47047 * 59.99638 * 4 2 1 6 6 H 1.07999 * 120.00136 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00116 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00112 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00300 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47049 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47248 * 119.99830 * 9 7 5 12 12 H 1.48497 * 109.47294 * 240.00183 * 9 7 5 13 13 C 1.52998 * 109.47381 * 119.99837 * 2 1 3 14 14 N 1.46906 * 109.47020 * 300.00339 * 13 2 1 15 15 C 1.46902 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.53008 * 109.46622 * 179.97438 * 15 14 13 17 17 C 1.52997 * 110.21486 * 65.47802 * 16 15 14 18 18 C 1.54475 * 110.24153 * 187.49866 * 16 15 14 19 19 C 1.54628 * 101.76679 * 144.41596 * 18 16 15 20 20 C 1.51282 * 104.19255 * 335.20311 * 19 18 16 21 21 O 1.21284 * 124.94170 * 196.27489 * 20 19 18 22 22 N 1.34422 * 110.11897 * 16.24902 * 20 19 18 23 23 H 1.09002 * 109.47185 * 299.99381 * 1 2 3 24 24 H 1.08994 * 109.47063 * 60.00354 * 1 2 3 25 25 H 1.09008 * 109.46699 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.46866 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.46687 * 299.99989 * 3 2 1 28 28 H 1.09002 * 109.47213 * 60.00106 * 3 2 1 29 29 H 1.08993 * 109.47277 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.47041 * 299.99763 * 4 2 1 31 31 H 0.96998 * 120.00461 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47142 * 180.02562 * 13 2 1 33 33 H 1.09000 * 109.46991 * 60.00294 * 13 2 1 34 34 H 1.00896 * 111.00309 * 56.04370 * 14 13 2 35 35 H 1.08990 * 109.47358 * 299.99539 * 15 14 13 36 36 H 1.09004 * 109.47457 * 60.00221 * 15 14 13 37 37 H 1.08997 * 109.47214 * 60.69697 * 17 16 15 38 38 H 1.09007 * 109.46707 * 180.69933 * 17 16 15 39 39 H 1.09000 * 109.47225 * 300.69624 * 17 16 15 40 40 H 1.09005 * 110.97031 * 262.53112 * 18 16 15 41 41 H 1.09003 * 110.97913 * 26.29918 * 18 16 15 42 42 H 1.08997 * 110.49349 * 216.52043 * 19 18 16 43 43 H 1.09004 * 110.59952 * 93.93219 * 19 18 16 44 44 H 0.96989 * 124.34951 * 180.43087 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5377 -0.0108 -2.4797 6 1 0.9171 0.8675 -2.3806 7 6 1.8704 -0.4821 -3.7319 8 7 2.6257 -1.5519 -3.8526 9 14 1.2471 0.3980 -5.2572 10 1 0.4216 1.5643 -4.8530 11 1 2.4018 0.8646 -6.0660 12 1 0.4219 -0.5357 -6.0649 13 6 2.0401 -0.7212 1.2492 14 7 1.5503 -0.0287 2.4487 15 6 2.0210 -0.6952 3.6703 16 6 1.4923 0.0535 4.8956 17 6 -0.0326 -0.0515 4.9620 18 6 2.1259 -0.5159 6.1842 19 6 2.2761 0.7561 7.0504 20 6 2.3421 1.8842 6.0446 21 8 2.7347 3.0064 6.2842 22 7 1.9029 1.4616 4.8465 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 -0.7208 -1.2494 30 1 1.6768 -1.7489 -1.2492 31 1 2.8601 -1.8833 -4.7336 32 1 3.1301 -0.7208 1.2494 33 1 1.6768 -1.7489 1.2492 34 1 0.5438 0.0414 2.4402 35 1 1.6572 -1.7224 3.6869 36 1 3.1109 -0.6953 3.6873 37 1 -0.3214 -1.0993 5.0450 38 1 -0.3968 0.4958 5.8315 39 1 -0.4659 0.3742 4.0570 40 1 1.4607 -1.2360 6.6608 41 1 3.0980 -0.9632 5.9764 42 1 3.1944 0.7128 7.6360 43 1 1.4129 0.8786 7.7048 44 1 1.8628 2.0160 4.0517 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657484357.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:31 Heat of formation + Delta-G solvation = -82.105506 kcal Electronic energy + Delta-G solvation = -21210.657328 eV Core-core repulsion = 18160.800470 eV Total energy + Delta-G solvation = -3049.856858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51747 -39.25996 -38.08550 -35.48489 -34.10810 -32.16783 -31.25881 -29.04197 -27.89616 -27.63322 -26.45453 -24.87166 -23.49274 -21.65257 -20.95983 -19.57570 -18.33931 -17.93466 -17.02363 -16.82909 -16.57995 -15.74223 -15.66573 -15.39271 -14.95827 -14.69436 -14.43107 -14.27349 -14.11876 -13.87006 -13.47897 -13.40486 -13.20984 -13.06580 -12.79142 -12.69171 -12.59126 -12.34632 -12.25517 -12.13963 -11.98458 -11.76262 -11.65363 -11.37634 -10.87411 -10.85565 -10.70518 -10.51379 -10.03540 -9.27594 -8.14719 -6.21274 1.39108 1.40759 1.52301 1.65155 2.42990 2.50713 3.17403 3.19553 3.54316 3.61423 3.87345 4.10387 4.16662 4.20984 4.25436 4.38622 4.46192 4.66198 4.75172 4.78634 4.83195 4.86507 4.91559 4.96813 5.00211 5.08031 5.14756 5.15178 5.21829 5.22194 5.39552 5.52617 5.54720 5.59340 5.65076 5.87823 5.93225 5.96320 6.07311 6.22838 6.37276 6.55218 6.94465 7.34263 7.46221 8.97726 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037974 B = 0.003543 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.167868 B = 7901.105524 C = 8103.261188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.107 4.107 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.065 0.935 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.954 3.046 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.085 3.915 14 N -0.686 5.686 15 C 0.055 3.945 16 C 0.158 3.842 17 C -0.158 4.158 18 C -0.115 4.115 19 C -0.147 4.147 20 C 0.503 3.497 21 O -0.601 6.601 22 N -0.705 5.705 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.039 0.961 26 H 0.027 0.973 27 H 0.035 0.965 28 H 0.067 0.933 29 H -0.018 1.018 30 H -0.014 1.014 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.024 0.976 34 H 0.346 0.654 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -1.041 21.606 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.056 4.056 3 C -0.165 4.165 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.083 0.917 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.207 1.207 13 C -0.044 4.044 14 N -0.319 5.319 15 C -0.075 4.075 16 C 0.072 3.928 17 C -0.216 4.216 18 C -0.153 4.153 19 C -0.187 4.187 20 C 0.291 3.709 21 O -0.484 6.484 22 N -0.357 5.357 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.086 0.914 29 H 0.001 0.999 30 H 0.005 0.995 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.139 0.861 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.729 -0.197 21.698 22.208 hybrid contribution -0.357 -0.297 -1.907 1.962 sum -5.086 -0.494 19.792 20.441 Atomic orbital electron populations 1.21675 0.94554 1.00531 1.01095 1.20492 0.95861 0.95838 0.93368 1.21508 0.98968 0.95560 1.00421 1.19009 0.93972 0.94096 0.92733 1.21661 1.30123 1.11807 0.91534 0.91719 1.25892 0.95751 0.95900 1.02508 1.70104 1.38933 1.24912 1.23946 0.85558 0.78115 0.78837 0.79527 1.18565 1.20988 1.20727 1.21765 0.98975 0.94411 0.89263 1.60455 1.16921 1.53725 1.00819 1.22341 1.00517 0.96169 0.88451 1.21233 0.95706 0.80194 0.95696 1.22210 0.92760 1.03865 1.02788 1.22761 1.03234 0.96847 0.92464 1.22368 1.06399 0.92440 0.97502 1.21655 0.74968 0.88780 0.85511 1.90714 1.50568 1.24528 1.82540 1.46473 1.63606 1.13828 1.11838 0.91355 0.93779 0.94152 0.95390 0.94566 0.91363 0.99943 0.99531 0.93184 0.92811 0.95801 0.83352 0.92339 0.91286 0.89278 0.91440 0.92406 0.86088 0.89235 0.87417 0.86105 0.75110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 7.89 71.98 0.57 -3.52 16 2 C -0.06 -2.08 0.60 -52.18 -0.03 -2.11 16 3 C -0.11 -3.98 8.06 71.99 0.58 -3.40 16 4 C 0.04 2.00 4.04 29.85 0.12 2.12 16 5 C -0.51 -28.11 7.65 25.60 0.20 -27.91 16 6 H 0.06 3.42 5.68 -2.91 -0.02 3.40 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 9 Si 0.95 44.33 29.54 68.60 2.03 46.35 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.09 2.63 4.65 86.30 0.40 3.03 16 14 N -0.69 -15.48 5.26 -513.86 -2.70 -18.18 16 15 C 0.06 0.94 4.84 86.31 0.42 1.36 16 16 C 0.16 2.14 0.96 4.06 0.00 2.15 16 17 C -0.16 -1.71 8.58 71.98 0.62 -1.09 16 18 C -0.11 -1.01 6.21 31.65 0.20 -0.81 16 19 C -0.15 -1.83 6.86 30.59 0.21 -1.62 16 20 C 0.50 11.57 8.43 87.90 0.74 12.31 16 21 O -0.60 -20.19 18.03 -3.04 -0.05 -20.24 16 22 N -0.71 -13.95 5.42 -419.98 -2.27 -16.23 16 23 H 0.07 1.80 6.57 -2.39 -0.02 1.79 16 24 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 25 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.45 6.62 -2.39 -0.02 1.44 16 28 H 0.07 2.15 7.60 -2.39 -0.02 2.13 16 29 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.35 7.10 5.10 -89.70 -0.46 6.65 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 36 H 0.07 1.34 8.04 -2.38 -0.02 1.32 16 37 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.06 0.75 6.73 -2.39 -0.02 0.73 16 40 H 0.12 0.42 7.90 -2.38 -0.02 0.40 16 41 H 0.09 0.76 7.84 -2.39 -0.02 0.74 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.41 9.27 8.63 -92.72 -0.80 8.47 16 Total: -1.00 -70.72 342.26 1.49 -69.23 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -0.28 Total: 14.99 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 4.48 Total: -19.27 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -4.69 Total: -91.06 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.05 Total: -20.24 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.72 1.49 -69.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657484357.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.876 kcal (2) G-P(sol) polarization free energy of solvation -70.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds