Wall clock time and date at job start Mon Mar 30 2020 01:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47029 * 2 1 4 4 C 1.53004 * 109.47285 * 239.99724 * 2 1 3 5 5 C 1.50702 * 109.46819 * 60.00223 * 4 2 1 6 6 H 1.08009 * 119.99924 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99960 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99957 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99887 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47422 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47074 * 120.00019 * 9 7 5 12 12 H 1.48498 * 109.47013 * 239.99423 * 9 7 5 13 13 C 1.53006 * 109.46910 * 119.99890 * 2 1 3 14 14 N 1.46896 * 109.47162 * 300.00061 * 13 2 1 15 15 C 1.46906 * 110.99992 * 180.02562 * 14 13 2 16 16 C 1.52991 * 109.47105 * 180.02562 * 15 14 13 17 17 C 1.53008 * 110.28737 * 299.47805 * 16 15 14 18 18 C 1.54663 * 110.39971 * 177.47975 * 16 15 14 19 19 C 1.54628 * 101.68539 * 266.73885 * 18 16 15 20 20 C 1.51285 * 104.19604 * 334.98579 * 19 18 16 21 21 O 1.21278 * 124.94221 * 196.23381 * 20 19 18 22 22 N 1.34426 * 110.11504 * 16.24956 * 20 19 18 23 23 H 1.09002 * 109.47331 * 299.99795 * 1 2 3 24 24 H 1.09003 * 109.47025 * 59.99936 * 1 2 3 25 25 H 1.09005 * 109.47191 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47072 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47234 * 299.99719 * 3 2 1 28 28 H 1.09002 * 109.46896 * 59.99939 * 3 2 1 29 29 H 1.08998 * 109.46966 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.46980 * 300.00244 * 4 2 1 31 31 H 0.96995 * 120.00206 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47038 * 179.97438 * 13 2 1 33 33 H 1.09005 * 109.46966 * 60.00141 * 13 2 1 34 34 H 1.00901 * 111.00222 * 303.95646 * 14 13 2 35 35 H 1.08998 * 109.46924 * 59.99775 * 15 14 13 36 36 H 1.09001 * 109.46783 * 299.99970 * 15 14 13 37 37 H 1.08994 * 109.47287 * 180.52179 * 17 16 15 38 38 H 1.08995 * 109.46564 * 300.52489 * 17 16 15 39 39 H 1.08998 * 109.46726 * 60.52310 * 17 16 15 40 40 H 1.09002 * 111.19063 * 148.56356 * 18 16 15 41 41 H 1.08994 * 110.84984 * 24.76429 * 18 16 15 42 42 H 1.08992 * 110.48523 * 216.30935 * 19 18 16 43 43 H 1.09001 * 110.48504 * 93.66268 * 19 18 16 44 44 H 0.97001 * 124.34628 * 180.40244 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9165 0.8670 -2.3806 7 6 1.8704 -0.4822 -3.7319 8 7 2.6265 -1.5515 -3.8526 9 14 1.2484 0.3988 -5.2571 10 1 0.4238 1.5658 -4.8531 11 1 2.4037 0.8646 -6.0656 12 1 0.4227 -0.5340 -6.0655 13 6 2.0400 -0.7213 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0218 -0.6946 3.6704 16 6 1.4922 0.0532 4.8955 17 6 2.0013 1.4961 4.8974 18 6 1.9238 -0.6665 6.1947 19 6 0.7071 -1.5819 6.4646 20 6 -0.4433 -0.8832 5.7738 21 8 -1.6169 -1.1157 5.9720 22 7 0.0247 0.0326 4.9082 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1301 -0.7217 -1.2489 30 1 1.6767 -1.7490 -1.2492 31 1 2.8602 -1.8834 -4.7335 32 1 3.1300 -0.7217 1.2491 33 1 1.6766 -1.7490 1.2493 34 1 1.8197 0.9436 2.4402 35 1 3.1116 -0.6940 3.6869 36 1 1.6587 -1.7222 3.6874 37 1 1.6241 2.0134 5.7795 38 1 3.0911 1.4968 4.9140 39 1 1.6512 2.0060 3.9998 40 1 2.0664 0.0432 7.0096 41 1 2.8262 -1.2554 6.0305 42 1 0.5185 -1.6598 7.5352 43 1 0.8691 -2.5691 6.0318 44 1 -0.5355 0.6033 4.3593 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657484358.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:35 Heat of formation + Delta-G solvation = -59.592483 kcal Electronic energy + Delta-G solvation = -21272.350021 eV Core-core repulsion = 18223.469401 eV Total energy + Delta-G solvation = -3048.880620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.71547 -37.94347 -36.92218 -34.04717 -32.22565 -31.45583 -30.62725 -27.24846 -26.41200 -26.36013 -25.09840 -23.75194 -22.11639 -20.86265 -20.24083 -18.04217 -16.96719 -16.46314 -16.20075 -15.57587 -14.86818 -14.73595 -14.50118 -14.15905 -13.89420 -13.56141 -13.24398 -13.16031 -12.84825 -12.69993 -12.46767 -12.37642 -12.02599 -11.82522 -11.72275 -11.18966 -11.08126 -11.00709 -10.89631 -10.76912 -10.52956 -10.28409 -10.13996 -9.90977 -9.71986 -9.21347 -9.02150 -8.82449 -8.33617 -8.17498 -5.97958 -3.98112 2.57078 3.29372 3.31373 3.39451 3.42751 3.97654 4.21658 4.37267 4.46814 4.54228 4.79468 4.81833 5.05727 5.28237 5.38012 5.39591 5.42084 5.46250 5.56468 5.65018 5.68689 5.72509 5.73924 5.90283 5.94598 6.19162 6.28621 6.46033 6.61931 6.74093 6.79827 6.80129 7.04439 7.15768 7.17725 7.23739 7.33527 7.58119 7.68422 7.82874 8.02255 8.24625 8.46441 9.07477 9.64996 11.13769 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034969 B = 0.003645 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.511709 B = 7679.004848 C = 7821.876499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.058 4.058 3 C -0.128 4.128 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.059 0.941 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.071 3.929 14 N -0.684 5.684 15 C 0.052 3.948 16 C 0.158 3.842 17 C -0.158 4.158 18 C -0.123 4.123 19 C -0.157 4.157 20 C 0.518 3.482 21 O -0.544 6.544 22 N -0.704 5.704 23 H 0.041 0.959 24 H 0.054 0.946 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.258 0.742 32 H 0.024 0.976 33 H 0.065 0.935 34 H 0.337 0.663 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 3.968 20.007 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.059 4.059 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.058 4.058 14 N -0.317 5.317 15 C -0.079 4.079 16 C 0.071 3.929 17 C -0.216 4.216 18 C -0.162 4.162 19 C -0.198 4.198 20 C 0.304 3.696 21 O -0.421 6.421 22 N -0.358 5.358 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.969 3.343 20.047 20.347 hybrid contribution 0.585 0.791 -1.349 1.670 sum 1.554 4.134 18.698 19.213 Atomic orbital electron populations 1.21593 0.94967 1.00604 1.00104 1.20629 0.95858 0.94954 0.94410 1.21765 0.99661 0.96766 1.00363 1.19125 0.95856 0.95216 0.90198 1.21272 1.30690 1.11937 0.90601 0.92245 1.25014 0.95388 0.95108 0.99076 1.69971 1.37350 1.23215 1.23206 0.86611 0.78596 0.79760 0.83492 1.19770 1.21183 1.21138 1.22107 0.96300 0.98150 0.89201 1.60558 1.63764 1.06352 1.01046 1.22347 0.97143 0.98763 0.89629 1.21103 0.80540 0.96321 0.94964 1.22107 1.01743 0.94696 1.03061 1.22714 0.98290 0.98727 0.96432 1.22363 0.94160 1.00476 1.02760 1.20810 0.89441 0.79699 0.79670 1.90750 1.18590 1.66413 1.66376 1.46196 1.07334 1.39842 1.42432 0.93999 0.92697 0.94197 0.94096 0.91674 0.94972 0.96937 0.96707 0.93208 0.95787 0.91606 0.84235 0.94286 0.90743 0.91738 0.91042 0.91313 0.89678 0.89125 0.88306 0.87874 0.74717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.06 37.16 0.30 -1.90 16 2 C -0.06 -1.12 0.60 -154.50 -0.09 -1.21 16 3 C -0.13 -2.27 7.89 37.16 0.29 -1.97 16 4 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.73 7.65 -34.44 -0.26 -13.99 16 6 H 0.06 1.57 5.68 -52.48 -0.30 1.27 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.15 4.65 -3.82 -0.02 1.13 16 14 N -0.68 -8.69 5.58 -113.78 -0.64 -9.32 16 15 C 0.05 0.53 4.82 -3.83 -0.02 0.51 16 16 C 0.16 1.30 0.96 -130.80 -0.13 1.17 16 17 C -0.16 -1.10 8.48 37.16 0.31 -0.78 16 18 C -0.12 -0.77 6.21 -25.00 -0.16 -0.93 16 19 C -0.16 -1.27 6.85 -26.74 -0.18 -1.45 16 20 C 0.52 6.35 8.43 -10.86 -0.09 6.26 16 21 O -0.54 -9.16 18.03 5.56 0.10 -9.06 16 22 N -0.70 -7.37 5.40 -46.52 -0.25 -7.62 16 23 H 0.04 0.71 7.60 -51.93 -0.39 0.31 16 24 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 28 H 0.03 0.47 6.57 -51.93 -0.34 0.13 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.34 4.01 4.92 -39.29 -0.19 3.81 16 35 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.53 6.68 -51.93 -0.35 0.18 16 40 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 41 H 0.09 0.45 7.90 -51.93 -0.41 0.04 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.41 4.52 8.96 -40.82 -0.37 4.15 16 LS Contribution 342.74 15.07 5.16 5.16 Total: -1.00 -31.80 342.74 -7.81 -39.61 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -7.66 Total: 1.71 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -0.25 Total: -11.01 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: -0.15 Total: -42.90 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.10 Total: -9.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.80 -7.81 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657484358.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.979 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds