Wall clock time and date at job start Mon Mar 30 2020 01:37:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.36935 * 119.99964 * 2 1
4 4 H 1.08005 * 120.00268 * 200.02716 * 3 2 1
5 5 C 1.38806 * 120.00259 * 20.02029 * 3 2 1
6 6 N 1.31617 * 119.99994 * 19.50030 * 5 3 2
7 7 Si 1.86802 * 120.00227 * 199.49662 * 5 3 2
8 8 H 1.48495 * 109.46960 * 60.00295 * 7 5 3
9 9 H 1.48502 * 109.47247 * 180.02562 * 7 5 3
10 10 H 1.48504 * 109.47129 * 299.99969 * 7 5 3
11 11 C 1.46503 * 120.00220 * 179.97438 * 2 1 3
12 12 C 1.52997 * 109.46771 * 89.99862 * 11 2 1
13 13 N 1.46506 * 109.47047 * 180.02562 * 12 11 2
14 14 C 1.46501 * 119.99745 * 270.00527 * 13 12 11
15 15 C 1.34778 * 119.99898 * 89.99948 * 13 12 11
16 16 O 1.21282 * 120.00407 * 0.02562 * 15 13 12
17 17 C 1.50698 * 119.99845 * 180.02562 * 15 13 12
18 18 H 1.09001 * 112.85241 * 71.38597 * 17 15 13
19 19 C 1.53783 * 113.61226 * 300.18711 * 17 15 13
20 20 C 1.53788 * 87.08056 * 219.93550 * 19 17 15
21 21 C 1.53783 * 87.17359 * 25.38815 * 20 19 17
22 22 C 1.53006 * 113.61122 * 89.15427 * 21 20 19
23 23 C 1.52997 * 113.61927 * 220.06265 * 21 20 19
24 24 H 1.09006 * 109.47350 * 275.19578 * 1 2 3
25 25 H 1.09001 * 109.47085 * 35.18960 * 1 2 3
26 26 H 1.09003 * 109.47513 * 155.19307 * 1 2 3
27 27 H 0.96999 * 120.00333 * 179.97438 * 6 5 3
28 28 H 1.09004 * 109.46783 * 330.00121 * 11 2 1
29 29 H 1.08992 * 109.47170 * 210.00116 * 11 2 1
30 30 H 1.08995 * 109.47087 * 60.00515 * 12 11 2
31 31 H 1.08992 * 109.47481 * 300.00063 * 12 11 2
32 32 H 1.09003 * 109.46937 * 269.99321 * 14 13 12
33 33 H 1.08989 * 109.47421 * 29.99951 * 14 13 12
34 34 H 1.09007 * 109.46953 * 149.99996 * 14 13 12
35 35 H 1.08997 * 113.61381 * 105.39508 * 19 17 15
36 36 H 1.08992 * 113.61689 * 334.48228 * 19 17 15
37 37 H 1.08991 * 113.61486 * 139.98330 * 20 19 17
38 38 H 1.09006 * 113.61217 * 270.80426 * 20 19 17
39 39 H 1.08996 * 109.46757 * 53.13318 * 22 21 20
40 40 H 1.08994 * 109.46906 * 173.12687 * 22 21 20
41 41 H 1.08993 * 109.47018 * 293.12864 * 22 21 20
42 42 H 1.09003 * 109.46761 * 40.49096 * 23 21 20
43 43 H 1.08994 * 109.47252 * 160.49681 * 23 21 20
44 44 H 1.09000 * 109.46558 * 280.49624 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1859 0.0000
4 1 3.1807 1.2142 -0.3203
5 6 1.5186 2.3517 0.4115
6 7 0.4298 2.2859 1.1481
7 14 2.2146 4.0141 -0.0799
8 1 2.2383 4.1226 -1.5607
9 1 1.3631 5.0931 0.4824
10 1 3.5959 4.1482 0.4486
11 6 2.1975 -1.2687 0.0006
12 6 2.4525 -1.7110 -1.4417
13 7 3.1845 -2.9800 -1.4412
14 6 4.6495 -2.9805 -1.4410
15 6 2.5102 -4.1470 -1.4409
16 8 1.2973 -4.1466 -1.4415
17 6 3.2632 -5.4523 -1.4398
18 1 3.7520 -5.6583 -0.4875
19 6 4.1852 -5.6325 -2.6573
20 6 3.7338 -7.1025 -2.6826
21 6 2.4461 -6.6398 -1.9808
22 6 1.3346 -6.2285 -2.9485
23 6 1.9627 -7.5996 -0.8918
24 1 -0.3634 0.0931 1.0235
25 1 -0.3633 0.8399 -0.5922
26 1 -0.3634 -0.9328 -0.4312
27 1 -0.0111 3.1005 1.4360
28 1 1.6084 -2.0282 0.5147
29 1 3.1499 -1.1381 0.5143
30 1 3.0415 -0.9516 -1.9559
31 1 1.5001 -1.8415 -1.9555
32 1 5.0130 -2.9811 -2.4686
33 1 5.0131 -2.0906 -0.9274
34 1 5.0125 -3.8705 -0.9268
35 1 5.2428 -5.5046 -2.4267
36 1 3.8698 -5.0638 -3.5319
37 1 3.5681 -7.4910 -3.6873
38 1 4.3522 -7.7597 -2.0712
39 1 1.1576 -7.0336 -3.6617
40 1 0.4203 -6.0313 -2.3890
41 1 1.6342 -5.3278 -3.4842
42 1 2.8187 -7.9694 -0.3274
43 1 1.2838 -7.0745 -0.2199
44 1 1.4412 -8.4386 -1.3524
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001667611476.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:37:07
Heat of formation + Delta-G solvation = 5.071597 kcal
Electronic energy + Delta-G solvation = -21553.318573 eV
Core-core repulsion = 18507.241998 eV
Total energy + Delta-G solvation = -3046.076575 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.82297 -38.10599 -35.93834 -34.84652 -31.58900 -30.72997 -28.81019 -27.42362
-26.97162 -26.12806 -25.62760 -23.25297 -22.63990 -20.62262 -19.35125 -18.13076
-16.93822 -16.58265 -15.91787 -15.43853 -14.90594 -14.55672 -14.11186 -14.01413
-13.59022 -13.39509 -13.32745 -12.90774 -12.62134 -12.46929 -12.33059 -12.12144
-11.94129 -11.91389 -11.66934 -11.33510 -11.23099 -10.84870 -10.82735 -10.78605
-10.49297 -10.46391 -10.18147 -10.16504 -9.85521 -9.78209 -9.21063 -8.61322
-8.27413 -6.71306 -5.69512 -3.12081 2.92309 3.31049 3.40768 3.46827
3.47945 4.28426 4.39232 4.51042 4.55658 4.58585 4.95201 5.16562
5.24854 5.35301 5.42349 5.43501 5.48568 5.54273 5.62392 5.66186
5.71234 5.72408 5.79898 5.83119 5.89153 5.96778 6.03538 6.13589
6.22495 6.33350 6.36012 6.50302 6.62563 6.73753 6.90551 7.04335
7.42207 7.73166 7.76130 7.83315 8.41079 8.52555 9.26083 9.91656
10.41072 11.35615
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.037034 B = 0.004036 C = 0.003799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 755.884054 B = 6936.306398 C = 7369.461862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.161 3.839
2 N -0.599 5.599
3 C -0.260 4.260
4 H 0.068 0.932
5 C 0.003 3.997
6 N -0.902 5.902
7 Si 0.901 3.099
8 H -0.285 1.285
9 H -0.291 1.291
10 H -0.283 1.283
11 C 0.144 3.856
12 C 0.093 3.907
13 N -0.611 5.611
14 C 0.081 3.919
15 C 0.518 3.482
16 O -0.534 6.534
17 C -0.128 4.128
18 H 0.112 0.888
19 C -0.127 4.127
20 C -0.135 4.135
21 C -0.061 4.061
22 C -0.118 4.118
23 C -0.135 4.135
24 H 0.029 0.971
25 H 0.039 0.961
26 H 0.004 0.996
27 H 0.253 0.747
28 H 0.037 0.963
29 H 0.044 0.956
30 H 0.072 0.928
31 H 0.075 0.925
32 H 0.051 0.949
33 H 0.072 0.928
34 H 0.066 0.934
35 H 0.074 0.926
36 H 0.083 0.917
37 H 0.069 0.931
38 H 0.082 0.918
39 H 0.046 0.954
40 H 0.071 0.929
41 H 0.052 0.948
42 H 0.053 0.947
43 H 0.061 0.939
44 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.723 -18.511 -7.209 21.696
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.016 3.984
2 N -0.322 5.322
3 C -0.389 4.389
4 H 0.086 0.914
5 C -0.196 4.196
6 N -0.547 5.547
7 Si 0.731 3.269
8 H -0.211 1.211
9 H -0.217 1.217
10 H -0.210 1.210
11 C 0.016 3.984
12 C -0.031 4.031
13 N -0.345 5.345
14 C -0.063 4.063
15 C 0.306 3.694
16 O -0.411 6.411
17 C -0.149 4.149
18 H 0.130 0.870
19 C -0.164 4.164
20 C -0.173 4.173
21 C -0.061 4.061
22 C -0.175 4.175
23 C -0.193 4.193
24 H 0.048 0.952
25 H 0.057 0.943
26 H 0.022 0.978
27 H 0.063 0.937
28 H 0.056 0.944
29 H 0.062 0.938
30 H 0.090 0.910
31 H 0.093 0.907
32 H 0.070 0.930
33 H 0.091 0.909
34 H 0.085 0.915
35 H 0.093 0.907
36 H 0.102 0.898
37 H 0.088 0.912
38 H 0.100 0.900
39 H 0.065 0.935
40 H 0.090 0.910
41 H 0.071 0.929
42 H 0.072 0.928
43 H 0.080 0.920
44 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 7.941 -18.333 -7.119 21.209
hybrid contribution 0.520 1.135 -0.142 1.257
sum 8.460 -17.198 -7.261 20.496
Atomic orbital electron populations
1.20783 0.82464 0.95724 0.99412 1.43864 1.01941 1.00488 1.85954
1.19120 0.96762 0.84968 1.38045 0.91444 1.24916 0.98257 0.98220
0.98223 1.70119 1.21553 1.26956 1.36045 0.86393 0.78149 0.83971
0.78415 1.21133 1.21664 1.20981 1.20957 0.96041 0.88552 0.92870
1.22471 0.96694 0.82300 1.01658 1.47995 1.06728 1.06717 1.73070
1.21790 0.80273 1.02931 1.01285 1.20415 0.87933 0.84883 0.76217
1.90687 1.13822 1.87155 1.49393 1.22943 0.98418 0.93322 1.00247
0.87005 1.22889 0.98970 0.97125 0.97448 1.23056 0.96997 0.96196
1.01004 1.21687 0.94420 0.93911 0.96085 1.21565 0.98382 0.99901
0.97656 1.21727 1.01111 0.98557 0.97861 0.95236 0.94272 0.97773
0.93708 0.94443 0.93807 0.91002 0.90696 0.93002 0.90882 0.91509
0.90740 0.89822 0.91191 0.89970 0.93462 0.90955 0.92856 0.92820
0.92027 0.92542
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.24 9.01 59.85 0.54 4.78 16
2 N -0.60 -15.79 2.92 -181.12 -0.53 -16.32 16
3 C -0.26 -7.26 9.64 -15.06 -0.15 -7.41 16
4 H 0.07 1.81 7.90 -52.48 -0.41 1.40 16
5 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16
6 N -0.90 -27.05 10.92 55.49 0.61 -26.44 16
7 Si 0.90 22.02 29.60 -169.99 -5.03 16.99 16
8 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
11 C 0.14 3.17 5.97 -4.04 -0.02 3.15 16
12 C 0.09 1.76 5.73 -4.04 -0.02 1.73 16
13 N -0.61 -9.29 2.87 -181.57 -0.52 -9.81 16
14 C 0.08 0.89 9.19 59.85 0.55 1.44 16
15 C 0.52 8.02 6.36 -10.99 -0.07 7.95 16
16 O -0.53 -10.29 13.64 5.56 0.08 -10.22 16
17 C -0.13 -1.43 2.44 -90.87 -0.22 -1.66 16
18 H 0.11 1.12 7.96 -51.93 -0.41 0.71 16
19 C -0.13 -1.12 5.64 -25.91 -0.15 -1.26 16
20 C -0.14 -1.11 7.22 -25.91 -0.19 -1.30 16
21 C -0.06 -0.64 1.21 -153.60 -0.19 -0.83 16
22 C -0.12 -1.44 7.48 37.16 0.28 -1.16 16
23 C -0.14 -1.33 9.15 37.16 0.34 -0.99 16
24 H 0.03 0.83 7.40 -51.93 -0.38 0.45 16
25 H 0.04 1.08 7.32 -51.93 -0.38 0.70 16
26 H 0.00 0.09 8.03 -51.93 -0.42 -0.33 16
27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16
28 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16
29 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16
30 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16
31 H 0.07 1.57 7.42 -51.93 -0.39 1.18 16
32 H 0.05 0.49 8.01 -51.93 -0.42 0.07 16
33 H 0.07 0.82 8.07 -51.93 -0.42 0.41 16
34 H 0.07 0.59 6.27 -51.93 -0.33 0.26 16
35 H 0.07 0.53 7.72 -51.93 -0.40 0.12 16
36 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16
37 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16
38 H 0.08 0.57 8.01 -51.93 -0.42 0.16 16
39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
40 H 0.07 1.03 7.28 -51.93 -0.38 0.65 16
41 H 0.05 0.72 6.52 -51.93 -0.34 0.38 16
42 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16
43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
LS Contribution 343.92 15.07 5.18 5.18
Total: -1.00 -32.21 343.92 -7.59 -39.80
By element:
Atomic # 1 Polarization: 4.39 SS G_CDS: -7.98 Total: -3.60 kcal
Atomic # 6 Polarization: 3.81 SS G_CDS: 0.62 Total: 4.43 kcal
Atomic # 7 Polarization: -52.14 SS G_CDS: -0.45 Total: -52.58 kcal
Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.22 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -32.21 -7.59 -39.80 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001667611476.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.867 kcal
(2) G-P(sol) polarization free energy of solvation -32.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.072 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds