Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 119.99964 * 2 1 4 4 H 1.08005 * 120.00268 * 200.02716 * 3 2 1 5 5 C 1.38806 * 120.00259 * 20.02029 * 3 2 1 6 6 N 1.31617 * 119.99994 * 19.50030 * 5 3 2 7 7 Si 1.86802 * 120.00227 * 199.49662 * 5 3 2 8 8 H 1.48495 * 109.46960 * 60.00295 * 7 5 3 9 9 H 1.48502 * 109.47247 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47129 * 299.99969 * 7 5 3 11 11 C 1.46503 * 120.00220 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46771 * 89.99862 * 11 2 1 13 13 N 1.46506 * 109.47047 * 180.02562 * 12 11 2 14 14 C 1.46501 * 119.99745 * 270.00527 * 13 12 11 15 15 C 1.34778 * 119.99898 * 89.99948 * 13 12 11 16 16 O 1.21282 * 120.00407 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99845 * 180.02562 * 15 13 12 18 18 H 1.09001 * 112.85241 * 71.38597 * 17 15 13 19 19 C 1.53783 * 113.61226 * 300.18711 * 17 15 13 20 20 C 1.53788 * 87.08056 * 219.93550 * 19 17 15 21 21 C 1.53783 * 87.17359 * 25.38815 * 20 19 17 22 22 C 1.53006 * 113.61122 * 89.15427 * 21 20 19 23 23 C 1.52997 * 113.61927 * 220.06265 * 21 20 19 24 24 H 1.09006 * 109.47350 * 275.19578 * 1 2 3 25 25 H 1.09001 * 109.47085 * 35.18960 * 1 2 3 26 26 H 1.09003 * 109.47513 * 155.19307 * 1 2 3 27 27 H 0.96999 * 120.00333 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46783 * 330.00121 * 11 2 1 29 29 H 1.08992 * 109.47170 * 210.00116 * 11 2 1 30 30 H 1.08995 * 109.47087 * 60.00515 * 12 11 2 31 31 H 1.08992 * 109.47481 * 300.00063 * 12 11 2 32 32 H 1.09003 * 109.46937 * 269.99321 * 14 13 12 33 33 H 1.08989 * 109.47421 * 29.99951 * 14 13 12 34 34 H 1.09007 * 109.46953 * 149.99996 * 14 13 12 35 35 H 1.08997 * 113.61381 * 105.39508 * 19 17 15 36 36 H 1.08992 * 113.61689 * 334.48228 * 19 17 15 37 37 H 1.08991 * 113.61486 * 139.98330 * 20 19 17 38 38 H 1.09006 * 113.61217 * 270.80426 * 20 19 17 39 39 H 1.08996 * 109.46757 * 53.13318 * 22 21 20 40 40 H 1.08994 * 109.46906 * 173.12687 * 22 21 20 41 41 H 1.08993 * 109.47018 * 293.12864 * 22 21 20 42 42 H 1.09003 * 109.46761 * 40.49096 * 23 21 20 43 43 H 1.08994 * 109.47252 * 160.49681 * 23 21 20 44 44 H 1.09000 * 109.46558 * 280.49624 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1807 1.2142 -0.3203 5 6 1.5186 2.3517 0.4115 6 7 0.4298 2.2859 1.1481 7 14 2.2146 4.0141 -0.0799 8 1 2.2383 4.1226 -1.5607 9 1 1.3631 5.0931 0.4824 10 1 3.5959 4.1482 0.4486 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4412 14 6 4.6495 -2.9805 -1.4410 15 6 2.5102 -4.1470 -1.4409 16 8 1.2973 -4.1466 -1.4415 17 6 3.2632 -5.4523 -1.4398 18 1 3.7520 -5.6583 -0.4875 19 6 4.1852 -5.6325 -2.6573 20 6 3.7338 -7.1025 -2.6826 21 6 2.4461 -6.6398 -1.9808 22 6 1.3346 -6.2285 -2.9485 23 6 1.9627 -7.5996 -0.8918 24 1 -0.3634 0.0931 1.0235 25 1 -0.3633 0.8399 -0.5922 26 1 -0.3634 -0.9328 -0.4312 27 1 -0.0111 3.1005 1.4360 28 1 1.6084 -2.0282 0.5147 29 1 3.1499 -1.1381 0.5143 30 1 3.0415 -0.9516 -1.9559 31 1 1.5001 -1.8415 -1.9555 32 1 5.0130 -2.9811 -2.4686 33 1 5.0131 -2.0906 -0.9274 34 1 5.0125 -3.8705 -0.9268 35 1 5.2428 -5.5046 -2.4267 36 1 3.8698 -5.0638 -3.5319 37 1 3.5681 -7.4910 -3.6873 38 1 4.3522 -7.7597 -2.0712 39 1 1.1576 -7.0336 -3.6617 40 1 0.4203 -6.0313 -2.3890 41 1 1.6342 -5.3278 -3.4842 42 1 2.8187 -7.9694 -0.3274 43 1 1.2838 -7.0745 -0.2199 44 1 1.4412 -8.4386 -1.3524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001667611476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = 5.071597 kcal Electronic energy + Delta-G solvation = -21553.318573 eV Core-core repulsion = 18507.241998 eV Total energy + Delta-G solvation = -3046.076575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82297 -38.10599 -35.93834 -34.84652 -31.58900 -30.72997 -28.81019 -27.42362 -26.97162 -26.12806 -25.62760 -23.25297 -22.63990 -20.62262 -19.35125 -18.13076 -16.93822 -16.58265 -15.91787 -15.43853 -14.90594 -14.55672 -14.11186 -14.01413 -13.59022 -13.39509 -13.32745 -12.90774 -12.62134 -12.46929 -12.33059 -12.12144 -11.94129 -11.91389 -11.66934 -11.33510 -11.23099 -10.84870 -10.82735 -10.78605 -10.49297 -10.46391 -10.18147 -10.16504 -9.85521 -9.78209 -9.21063 -8.61322 -8.27413 -6.71306 -5.69512 -3.12081 2.92309 3.31049 3.40768 3.46827 3.47945 4.28426 4.39232 4.51042 4.55658 4.58585 4.95201 5.16562 5.24854 5.35301 5.42349 5.43501 5.48568 5.54273 5.62392 5.66186 5.71234 5.72408 5.79898 5.83119 5.89153 5.96778 6.03538 6.13589 6.22495 6.33350 6.36012 6.50302 6.62563 6.73753 6.90551 7.04335 7.42207 7.73166 7.76130 7.83315 8.41079 8.52555 9.26083 9.91656 10.41072 11.35615 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037034 B = 0.004036 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.884054 B = 6936.306398 C = 7369.461862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.902 5.902 7 Si 0.901 3.099 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.144 3.856 12 C 0.093 3.907 13 N -0.611 5.611 14 C 0.081 3.919 15 C 0.518 3.482 16 O -0.534 6.534 17 C -0.128 4.128 18 H 0.112 0.888 19 C -0.127 4.127 20 C -0.135 4.135 21 C -0.061 4.061 22 C -0.118 4.118 23 C -0.135 4.135 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.004 0.996 27 H 0.253 0.747 28 H 0.037 0.963 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.723 -18.511 -7.209 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.322 5.322 3 C -0.389 4.389 4 H 0.086 0.914 5 C -0.196 4.196 6 N -0.547 5.547 7 Si 0.731 3.269 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.016 3.984 12 C -0.031 4.031 13 N -0.345 5.345 14 C -0.063 4.063 15 C 0.306 3.694 16 O -0.411 6.411 17 C -0.149 4.149 18 H 0.130 0.870 19 C -0.164 4.164 20 C -0.173 4.173 21 C -0.061 4.061 22 C -0.175 4.175 23 C -0.193 4.193 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.941 -18.333 -7.119 21.209 hybrid contribution 0.520 1.135 -0.142 1.257 sum 8.460 -17.198 -7.261 20.496 Atomic orbital electron populations 1.20783 0.82464 0.95724 0.99412 1.43864 1.01941 1.00488 1.85954 1.19120 0.96762 0.84968 1.38045 0.91444 1.24916 0.98257 0.98220 0.98223 1.70119 1.21553 1.26956 1.36045 0.86393 0.78149 0.83971 0.78415 1.21133 1.21664 1.20981 1.20957 0.96041 0.88552 0.92870 1.22471 0.96694 0.82300 1.01658 1.47995 1.06728 1.06717 1.73070 1.21790 0.80273 1.02931 1.01285 1.20415 0.87933 0.84883 0.76217 1.90687 1.13822 1.87155 1.49393 1.22943 0.98418 0.93322 1.00247 0.87005 1.22889 0.98970 0.97125 0.97448 1.23056 0.96997 0.96196 1.01004 1.21687 0.94420 0.93911 0.96085 1.21565 0.98382 0.99901 0.97656 1.21727 1.01111 0.98557 0.97861 0.95236 0.94272 0.97773 0.93708 0.94443 0.93807 0.91002 0.90696 0.93002 0.90882 0.91509 0.90740 0.89822 0.91191 0.89970 0.93462 0.90955 0.92856 0.92820 0.92027 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.24 9.01 59.85 0.54 4.78 16 2 N -0.60 -15.79 2.92 -181.12 -0.53 -16.32 16 3 C -0.26 -7.26 9.64 -15.06 -0.15 -7.41 16 4 H 0.07 1.81 7.90 -52.48 -0.41 1.40 16 5 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 6 N -0.90 -27.05 10.92 55.49 0.61 -26.44 16 7 Si 0.90 22.02 29.60 -169.99 -5.03 16.99 16 8 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 C 0.14 3.17 5.97 -4.04 -0.02 3.15 16 12 C 0.09 1.76 5.73 -4.04 -0.02 1.73 16 13 N -0.61 -9.29 2.87 -181.57 -0.52 -9.81 16 14 C 0.08 0.89 9.19 59.85 0.55 1.44 16 15 C 0.52 8.02 6.36 -10.99 -0.07 7.95 16 16 O -0.53 -10.29 13.64 5.56 0.08 -10.22 16 17 C -0.13 -1.43 2.44 -90.87 -0.22 -1.66 16 18 H 0.11 1.12 7.96 -51.93 -0.41 0.71 16 19 C -0.13 -1.12 5.64 -25.91 -0.15 -1.26 16 20 C -0.14 -1.11 7.22 -25.91 -0.19 -1.30 16 21 C -0.06 -0.64 1.21 -153.60 -0.19 -0.83 16 22 C -0.12 -1.44 7.48 37.16 0.28 -1.16 16 23 C -0.14 -1.33 9.15 37.16 0.34 -0.99 16 24 H 0.03 0.83 7.40 -51.93 -0.38 0.45 16 25 H 0.04 1.08 7.32 -51.93 -0.38 0.70 16 26 H 0.00 0.09 8.03 -51.93 -0.42 -0.33 16 27 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 29 H 0.04 0.94 8.04 -51.93 -0.42 0.52 16 30 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 31 H 0.07 1.57 7.42 -51.93 -0.39 1.18 16 32 H 0.05 0.49 8.01 -51.93 -0.42 0.07 16 33 H 0.07 0.82 8.07 -51.93 -0.42 0.41 16 34 H 0.07 0.59 6.27 -51.93 -0.33 0.26 16 35 H 0.07 0.53 7.72 -51.93 -0.40 0.12 16 36 H 0.08 0.82 7.71 -51.93 -0.40 0.42 16 37 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 38 H 0.08 0.57 8.01 -51.93 -0.42 0.16 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.03 7.28 -51.93 -0.38 0.65 16 41 H 0.05 0.72 6.52 -51.93 -0.34 0.38 16 42 H 0.05 0.45 8.01 -51.93 -0.42 0.03 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -32.21 343.92 -7.59 -39.80 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -7.98 Total: -3.60 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 0.62 Total: 4.43 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.45 Total: -52.58 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.21 -7.59 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667611476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.867 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds