Wall clock time and date at job start Mon Mar 30 2020 01:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36935 * 119.99964 * 2 1 4 4 H 1.08005 * 120.00268 * 200.02716 * 3 2 1 5 5 C 1.38806 * 120.00259 * 20.02029 * 3 2 1 6 6 N 1.31617 * 119.99994 * 19.50030 * 5 3 2 7 7 Si 1.86802 * 120.00227 * 199.49662 * 5 3 2 8 8 H 1.48495 * 109.46960 * 60.00295 * 7 5 3 9 9 H 1.48502 * 109.47247 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47129 * 299.99969 * 7 5 3 11 11 C 1.46503 * 120.00220 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.46771 * 89.99862 * 11 2 1 13 13 N 1.46506 * 109.47047 * 180.02562 * 12 11 2 14 14 C 1.46501 * 119.99745 * 270.00527 * 13 12 11 15 15 C 1.34778 * 119.99898 * 89.99948 * 13 12 11 16 16 O 1.21282 * 120.00407 * 0.02562 * 15 13 12 17 17 C 1.50698 * 119.99845 * 180.02562 * 15 13 12 18 18 H 1.09001 * 112.85241 * 71.38597 * 17 15 13 19 19 C 1.53783 * 113.61226 * 300.18711 * 17 15 13 20 20 C 1.53788 * 87.08056 * 219.93550 * 19 17 15 21 21 C 1.53783 * 87.17359 * 25.38815 * 20 19 17 22 22 C 1.53006 * 113.61122 * 89.15427 * 21 20 19 23 23 C 1.52997 * 113.61927 * 220.06265 * 21 20 19 24 24 H 1.09006 * 109.47350 * 275.19578 * 1 2 3 25 25 H 1.09001 * 109.47085 * 35.18960 * 1 2 3 26 26 H 1.09003 * 109.47513 * 155.19307 * 1 2 3 27 27 H 0.96999 * 120.00333 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.46783 * 330.00121 * 11 2 1 29 29 H 1.08992 * 109.47170 * 210.00116 * 11 2 1 30 30 H 1.08995 * 109.47087 * 60.00515 * 12 11 2 31 31 H 1.08992 * 109.47481 * 300.00063 * 12 11 2 32 32 H 1.09003 * 109.46937 * 269.99321 * 14 13 12 33 33 H 1.08989 * 109.47421 * 29.99951 * 14 13 12 34 34 H 1.09007 * 109.46953 * 149.99996 * 14 13 12 35 35 H 1.08997 * 113.61381 * 105.39508 * 19 17 15 36 36 H 1.08992 * 113.61689 * 334.48228 * 19 17 15 37 37 H 1.08991 * 113.61486 * 139.98330 * 20 19 17 38 38 H 1.09006 * 113.61217 * 270.80426 * 20 19 17 39 39 H 1.08996 * 109.46757 * 53.13318 * 22 21 20 40 40 H 1.08994 * 109.46906 * 173.12687 * 22 21 20 41 41 H 1.08993 * 109.47018 * 293.12864 * 22 21 20 42 42 H 1.09003 * 109.46761 * 40.49096 * 23 21 20 43 43 H 1.08994 * 109.47252 * 160.49681 * 23 21 20 44 44 H 1.09000 * 109.46558 * 280.49624 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1807 1.2142 -0.3203 5 6 1.5186 2.3517 0.4115 6 7 0.4298 2.2859 1.1481 7 14 2.2146 4.0141 -0.0799 8 1 2.2383 4.1226 -1.5607 9 1 1.3631 5.0931 0.4824 10 1 3.5959 4.1482 0.4486 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1845 -2.9800 -1.4412 14 6 4.6495 -2.9805 -1.4410 15 6 2.5102 -4.1470 -1.4409 16 8 1.2973 -4.1466 -1.4415 17 6 3.2632 -5.4523 -1.4398 18 1 3.7520 -5.6583 -0.4875 19 6 4.1852 -5.6325 -2.6573 20 6 3.7338 -7.1025 -2.6826 21 6 2.4461 -6.6398 -1.9808 22 6 1.3346 -6.2285 -2.9485 23 6 1.9627 -7.5996 -0.8918 24 1 -0.3634 0.0931 1.0235 25 1 -0.3633 0.8399 -0.5922 26 1 -0.3634 -0.9328 -0.4312 27 1 -0.0111 3.1005 1.4360 28 1 1.6084 -2.0282 0.5147 29 1 3.1499 -1.1381 0.5143 30 1 3.0415 -0.9516 -1.9559 31 1 1.5001 -1.8415 -1.9555 32 1 5.0130 -2.9811 -2.4686 33 1 5.0131 -2.0906 -0.9274 34 1 5.0125 -3.8705 -0.9268 35 1 5.2428 -5.5046 -2.4267 36 1 3.8698 -5.0638 -3.5319 37 1 3.5681 -7.4910 -3.6873 38 1 4.3522 -7.7597 -2.0712 39 1 1.1576 -7.0336 -3.6617 40 1 0.4203 -6.0313 -2.3890 41 1 1.6342 -5.3278 -3.4842 42 1 2.8187 -7.9694 -0.3274 43 1 1.2838 -7.0745 -0.2199 44 1 1.4412 -8.4386 -1.3524 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001667611476.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:06 Heat of formation + Delta-G solvation = -13.881141 kcal Electronic energy + Delta-G solvation = -21554.140425 eV Core-core repulsion = 18507.241998 eV Total energy + Delta-G solvation = -3046.898428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81611 -39.23019 -37.69588 -36.37469 -33.53116 -31.71401 -30.35681 -28.31662 -28.01656 -27.93426 -27.16500 -24.88604 -23.38059 -22.49605 -20.52218 -19.08200 -18.74822 -17.95113 -17.35793 -16.66904 -16.42578 -15.73396 -15.59903 -15.32119 -15.04063 -14.80859 -14.29709 -14.15774 -14.01498 -13.92848 -13.59813 -13.27868 -13.10033 -12.97571 -12.82786 -12.79977 -12.70040 -12.48897 -12.40489 -12.18868 -12.15127 -11.92452 -11.71186 -11.60127 -11.25258 -10.94701 -10.69276 -10.37893 -9.69394 -8.81413 -7.85726 -5.32525 1.46420 1.50671 1.57134 1.73896 2.11072 2.52693 3.27157 3.44507 3.59990 3.63817 3.76181 3.87390 3.99812 4.23082 4.33882 4.39835 4.43230 4.58433 4.63333 4.70083 4.73608 4.77026 4.82744 4.85253 4.91155 4.93864 4.97443 5.02250 5.07887 5.09043 5.15859 5.25582 5.26201 5.32635 5.53085 5.54446 5.60368 5.60436 5.65719 6.27065 6.55368 7.08643 7.31545 7.80413 8.27688 9.18796 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037034 B = 0.004036 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.884054 B = 6936.306398 C = 7369.461862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.617 5.617 3 C -0.269 4.269 4 H 0.080 0.920 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.278 1.278 9 H -0.296 1.296 10 H -0.270 1.270 11 C 0.151 3.849 12 C 0.113 3.887 13 N -0.613 5.613 14 C 0.075 3.925 15 C 0.510 3.490 16 O -0.583 6.583 17 C -0.128 4.128 18 H 0.132 0.868 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.072 4.072 22 C -0.113 4.113 23 C -0.133 4.133 24 H 0.004 0.996 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.249 0.751 28 H 0.022 0.978 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.035 0.965 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.980 -19.877 -8.141 24.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.340 5.340 3 C -0.399 4.399 4 H 0.097 0.903 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.800 3.200 8 H -0.204 1.204 9 H -0.223 1.223 10 H -0.195 1.195 11 C 0.023 3.977 12 C -0.012 4.012 13 N -0.346 5.346 14 C -0.067 4.067 15 C 0.299 3.701 16 O -0.462 6.462 17 C -0.149 4.149 18 H 0.150 0.850 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.073 4.073 22 C -0.170 4.170 23 C -0.190 4.190 24 H 0.022 0.978 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.124 0.876 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.054 0.946 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.264 -19.739 -8.069 24.116 hybrid contribution -0.515 1.486 0.163 1.581 sum 10.749 -18.252 -7.906 22.610 Atomic orbital electron populations 1.20478 0.83138 0.95532 0.97509 1.44112 1.01948 1.01754 1.86229 1.19537 0.97365 0.85662 1.37314 0.90273 1.25802 0.98897 1.01942 0.98316 1.70289 1.23228 1.27550 1.37501 0.85267 0.77752 0.78934 0.78071 1.20409 1.22261 1.19528 1.21010 0.95380 0.86452 0.94831 1.21860 0.96250 0.84419 0.98712 1.48067 1.08546 1.05236 1.72756 1.22088 0.77204 1.04286 1.03134 1.21337 0.87694 0.86244 0.74781 1.90673 1.16235 1.87913 1.51424 1.23106 0.98965 0.90475 1.02376 0.85039 1.22892 0.99931 0.97297 0.95456 1.23014 0.94986 0.96127 1.01456 1.21796 0.95025 0.94180 0.96285 1.21475 0.97873 0.99709 0.97981 1.21712 1.01517 0.98350 0.97424 0.97801 0.96224 0.96260 0.94192 0.95911 0.93108 0.90488 0.93431 0.90849 0.91098 0.88643 0.87831 0.91022 0.90453 0.87627 0.91653 0.94095 0.94746 0.90662 0.94615 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.78 9.01 127.77 1.15 10.94 16 2 N -0.62 -33.08 2.92 -726.93 -2.13 -35.21 16 3 C -0.27 -15.08 9.64 84.03 0.81 -14.27 16 4 H 0.08 4.16 7.90 -2.91 -0.02 4.14 16 5 C -0.05 -3.11 4.96 84.86 0.42 -2.69 16 6 N -0.94 -57.63 10.92 21.65 0.24 -57.39 16 7 Si 0.97 45.32 29.60 68.60 2.03 47.36 16 8 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 9 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 C 0.15 6.68 5.97 86.38 0.52 7.20 16 12 C 0.11 4.29 5.73 86.38 0.50 4.78 16 13 N -0.61 -17.99 2.87 -846.76 -2.43 -20.42 16 14 C 0.07 1.41 9.19 127.77 1.17 2.58 16 15 C 0.51 15.59 6.36 87.66 0.56 16.15 16 16 O -0.58 -23.40 13.64 -3.03 -0.04 -23.44 16 17 C -0.13 -2.57 2.44 -10.95 -0.03 -2.60 16 18 H 0.13 2.15 7.96 -2.39 -0.02 2.13 16 19 C -0.12 -1.64 5.64 31.12 0.18 -1.46 16 20 C -0.12 -1.47 7.22 31.12 0.22 -1.25 16 21 C -0.07 -1.40 1.21 -51.59 -0.06 -1.47 16 22 C -0.11 -2.78 7.48 71.98 0.54 -2.24 16 23 C -0.13 -2.39 9.15 71.98 0.66 -1.73 16 24 H 0.00 0.22 7.40 -2.38 -0.02 0.20 16 25 H 0.02 1.11 7.32 -2.39 -0.02 1.09 16 26 H 0.02 0.96 8.03 -2.39 -0.02 0.94 16 27 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.02 1.06 8.07 -2.38 -0.02 1.04 16 29 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 30 H 0.08 2.82 8.07 -2.39 -0.02 2.80 16 31 H 0.05 2.06 7.42 -2.39 -0.02 2.04 16 32 H 0.07 1.11 8.01 -2.39 -0.02 1.09 16 33 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 34 H 0.10 1.27 6.27 -2.38 -0.01 1.26 16 35 H 0.10 0.88 7.72 -2.39 -0.02 0.86 16 36 H 0.07 1.20 7.71 -2.39 -0.02 1.19 16 37 H 0.08 0.90 8.10 -2.39 -0.02 0.88 16 38 H 0.11 0.89 8.01 -2.38 -0.02 0.87 16 39 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.04 1.24 7.28 -2.39 -0.02 1.22 16 41 H 0.03 0.95 6.52 -2.39 -0.02 0.93 16 42 H 0.07 1.01 8.01 -2.39 -0.02 0.99 16 43 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.43 343.92 5.24 -67.20 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: 0.94 Total: 7.96 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.63 Total: 13.94 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -4.32 Total: -113.02 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.04 Total: -23.44 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.43 5.24 -67.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001667611476.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.316 kcal (2) G-P(sol) polarization free energy of solvation -72.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds