Wall clock time and date at job start Mon Mar 30 2020 01:32:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36932 * 120.00033 * 2 1
4 4 H 1.08000 * 120.00531 * 322.04279 * 3 2 1
5 5 C 1.38821 * 119.99720 * 142.03897 * 3 2 1
6 6 N 1.31618 * 119.99897 * 157.02264 * 5 3 2
7 7 Si 1.86793 * 120.00049 * 337.02742 * 5 3 2
8 8 H 1.48506 * 109.47280 * 95.67913 * 7 5 3
9 9 H 1.48501 * 109.47260 * 215.67874 * 7 5 3
10 10 H 1.48506 * 109.47136 * 335.67773 * 7 5 3
11 11 C 1.46504 * 119.99576 * 180.02562 * 2 1 3
12 12 C 1.52996 * 109.47221 * 90.00109 * 11 2 1
13 13 C 1.53006 * 109.46876 * 180.02562 * 12 11 2
14 14 N 1.46508 * 109.46838 * 179.97438 * 13 12 11
15 15 C 1.34776 * 119.99617 * 179.97438 * 14 13 12
16 16 O 1.21288 * 119.99899 * 359.97438 * 15 14 13
17 17 C 1.50701 * 119.99882 * 180.02562 * 15 14 13
18 18 C 1.52997 * 110.01731 * 59.29258 * 17 15 14
19 19 C 1.54262 * 110.02712 * 297.90430 * 17 15 14
20 20 C 1.54972 * 104.15696 * 217.13785 * 19 17 15
21 21 C 1.54885 * 102.77865 * 37.88923 * 20 19 17
22 22 C 1.53876 * 110.03140 * 180.68780 * 17 15 14
23 23 H 1.09008 * 109.47073 * 265.64583 * 1 2 3
24 24 H 1.09006 * 109.47513 * 25.63983 * 1 2 3
25 25 H 1.09003 * 109.47779 * 145.64554 * 1 2 3
26 26 H 0.96997 * 120.00271 * 180.02562 * 6 5 3
27 27 H 1.08994 * 109.47280 * 329.99123 * 11 2 1
28 28 H 1.09005 * 109.46656 * 209.99519 * 11 2 1
29 29 H 1.08994 * 109.47799 * 59.99332 * 12 11 2
30 30 H 1.09005 * 109.46824 * 299.99307 * 12 11 2
31 31 H 1.08994 * 109.47486 * 59.99099 * 13 12 11
32 32 H 1.08995 * 109.46709 * 299.99131 * 13 12 11
33 33 H 0.96997 * 120.00086 * 359.97438 * 14 13 12
34 34 H 1.08998 * 109.47167 * 60.70292 * 18 17 15
35 35 H 1.09004 * 109.47274 * 180.69962 * 18 17 15
36 36 H 1.08998 * 109.47280 * 300.70182 * 18 17 15
37 37 H 1.08999 * 110.48901 * 335.78278 * 19 17 15
38 38 H 1.09001 * 110.48863 * 98.42861 * 19 17 15
39 39 H 1.08996 * 110.71687 * 279.57384 * 20 19 17
40 40 H 1.09004 * 110.92248 * 156.29991 * 20 19 17
41 41 H 1.08999 * 110.48767 * 203.40863 * 21 20 19
42 42 H 1.08998 * 110.48566 * 80.75770 * 21 20 19
43 43 H 1.09003 * 110.02794 * 238.56561 * 22 17 15
44 44 H 1.08998 * 110.03080 * 359.94682 * 22 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1859 0.0000
4 1 1.7811 2.0223 -0.5753
5 6 3.3176 1.3130 0.7395
6 7 4.2044 2.2303 0.4166
7 14 3.6305 0.1821 2.1929
8 1 4.4681 -0.9641 1.7570
9 1 4.3370 0.9332 3.2615
10 1 2.3351 -0.3220 2.7158
11 6 2.1974 -1.2688 -0.0006
12 6 2.4524 -1.7099 -1.4432
13 6 3.2168 -3.0353 -1.4437
14 7 3.4604 -3.4579 -2.8252
15 6 4.1228 -4.6055 -3.0719
16 8 4.5175 -5.2880 -2.1502
17 6 4.3739 -5.0400 -4.4929
18 6 5.1857 -3.9736 -5.2309
19 6 3.0330 -5.2786 -5.2172
20 6 3.3057 -6.5043 -6.1255
21 6 4.2190 -7.3894 -5.2414
22 6 5.1280 -6.3812 -4.5085
23 1 -0.3634 -0.0780 1.0248
24 1 -0.3634 0.9265 -0.4447
25 1 -0.3635 -0.8484 -0.5799
26 1 5.0207 2.3189 0.9330
27 1 1.6084 -2.0286 0.5130
28 1 3.1499 -1.1387 0.5133
29 1 3.0414 -0.9501 -1.9568
30 1 1.4999 -1.8400 -1.9571
31 1 2.6274 -3.7949 -0.9303
32 1 4.1692 -2.9056 -0.9298
33 1 3.1450 -2.9119 -3.5622
34 1 6.1460 -3.8390 -4.7331
35 1 5.3515 -4.2910 -6.2604
36 1 4.6381 -3.0313 -5.2249
37 1 2.2458 -5.5046 -4.4980
38 1 2.7641 -4.4098 -5.8181
39 1 3.8241 -6.2022 -7.0354
40 1 2.3785 -7.0248 -6.3656
41 1 4.8147 -8.0603 -5.8603
42 1 3.6237 -7.9565 -4.5259
43 1 6.0719 -6.2726 -5.0426
44 1 5.3131 -6.7174 -3.4883
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001689819085.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:43
Heat of formation + Delta-G solvation = -39.145189 kcal
Electronic energy + Delta-G solvation = -21042.762903 eV
Core-core repulsion = 17994.768944 eV
Total energy + Delta-G solvation = -3047.993959 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.43493 -37.58649 -36.42099 -34.75841 -32.10209 -31.54655 -30.40614 -28.86858
-26.46592 -25.90238 -25.15840 -22.30910 -21.42417 -20.86552 -20.73202 -18.99772
-17.12799 -16.78067 -15.88713 -15.66701 -15.33212 -15.11981 -14.53945 -14.22756
-13.86962 -13.53914 -13.39316 -13.23318 -12.85891 -12.74760 -12.50858 -12.13943
-11.78839 -11.70893 -11.40876 -11.32086 -11.24191 -11.19264 -11.04466 -10.90621
-10.87680 -10.66825 -10.51949 -10.40057 -9.80588 -9.55579 -9.52489 -8.88947
-8.52339 -6.83642 -6.02390 -3.43553 2.73422 3.29241 3.32533 3.47163
3.52894 4.23385 4.35916 4.51531 4.53222 4.95282 4.96464 5.00387
5.10757 5.21169 5.26601 5.34170 5.41994 5.49483 5.56241 5.60245
5.63231 5.67756 5.74293 5.83775 5.85268 5.89575 6.03328 6.05824
6.10475 6.18030 6.21235 6.26984 6.33477 6.52787 6.66834 6.69920
6.76202 6.92239 7.63984 8.03612 8.33376 8.35510 8.96731 9.69117
10.10628 11.13190
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.028209 B = 0.003939 C = 0.003820
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 992.338684 B = 7106.681146 C = 7328.643120
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.124 3.876
2 N -0.612 5.612
3 C -0.273 4.273
4 H 0.078 0.922
5 C 0.037 3.963
6 N -0.898 5.898
7 Si 0.875 3.125
8 H -0.284 1.284
9 H -0.300 1.300
10 H -0.270 1.270
11 C 0.143 3.857
12 C -0.145 4.145
13 C 0.117 3.883
14 N -0.722 5.722
15 C 0.519 3.481
16 O -0.544 6.544
17 C -0.085 4.085
18 C -0.137 4.137
19 C -0.113 4.113
20 C -0.122 4.122
21 C -0.124 4.124
22 C -0.116 4.116
23 H 0.006 0.994
24 H 0.045 0.955
25 H 0.026 0.974
26 H 0.263 0.737
27 H 0.040 0.960
28 H 0.055 0.945
29 H 0.076 0.924
30 H 0.059 0.941
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.400 0.600
34 H 0.061 0.939
35 H 0.067 0.933
36 H 0.061 0.939
37 H 0.070 0.930
38 H 0.074 0.926
39 H 0.068 0.932
40 H 0.067 0.933
41 H 0.065 0.935
42 H 0.065 0.935
43 H 0.068 0.932
44 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.565 -16.217 -13.557 21.195
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.021 4.021
2 N -0.336 5.336
3 C -0.402 4.402
4 H 0.096 0.904
5 C -0.163 4.163
6 N -0.539 5.539
7 Si 0.705 3.295
8 H -0.212 1.212
9 H -0.228 1.228
10 H -0.194 1.194
11 C 0.016 3.984
12 C -0.186 4.186
13 C -0.007 4.007
14 N -0.373 5.373
15 C 0.305 3.695
16 O -0.422 6.422
17 C -0.088 4.088
18 C -0.195 4.195
19 C -0.151 4.151
20 C -0.160 4.160
21 C -0.161 4.161
22 C -0.154 4.154
23 H 0.024 0.976
24 H 0.063 0.937
25 H 0.045 0.955
26 H 0.073 0.927
27 H 0.058 0.942
28 H 0.073 0.927
29 H 0.094 0.906
30 H 0.077 0.923
31 H 0.080 0.920
32 H 0.084 0.916
33 H 0.234 0.766
34 H 0.080 0.920
35 H 0.086 0.914
36 H 0.080 0.920
37 H 0.088 0.912
38 H 0.093 0.907
39 H 0.087 0.913
40 H 0.086 0.914
41 H 0.084 0.916
42 H 0.084 0.916
43 H 0.086 0.914
44 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -1.163 -16.570 -12.811 20.977
hybrid contribution 0.172 -0.179 0.543 0.597
sum -0.991 -16.749 -12.268 20.785
Atomic orbital electron populations
1.21081 0.84589 0.98989 0.97411 1.44040 1.00793 1.01982 1.86821
1.18791 1.06137 0.90866 1.24368 0.90432 1.25473 0.96802 0.96421
0.97644 1.69876 1.08438 1.36198 1.39423 0.86952 0.78055 0.80090
0.84357 1.21165 1.22794 1.19445 1.21031 0.96544 0.87799 0.93030
1.22377 0.99554 0.94641 1.01983 1.21474 1.00549 0.96760 0.81899
1.46097 1.57913 1.23727 1.09562 1.20509 0.77225 0.80648 0.91098
1.90653 1.51237 1.54006 1.46277 1.21421 0.97472 0.97603 0.92294
1.21892 1.00010 0.97332 1.00244 1.22466 0.95296 0.98999 0.98326
1.22493 0.99639 0.95854 0.97987 1.22356 0.97821 0.97581 0.98365
1.22239 0.97813 0.92362 1.02948 0.97555 0.93657 0.95509 0.92671
0.94166 0.92724 0.90560 0.92277 0.91975 0.91639 0.76607 0.91977
0.91416 0.91970 0.91163 0.90687 0.91310 0.91438 0.91613 0.91607
0.91370 0.89270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 2.48 10.70 59.84 0.64 3.12 16
2 N -0.61 -14.57 2.47 -181.11 -0.45 -15.02 16
3 C -0.27 -7.62 9.88 -15.06 -0.15 -7.77 16
4 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16
5 C 0.04 1.08 5.29 -17.43 -0.09 0.99 16
6 N -0.90 -27.29 13.97 55.49 0.78 -26.52 16
7 Si 0.88 22.42 25.10 -169.99 -4.27 18.16 16
8 H -0.28 -7.08 6.68 56.52 0.38 -6.70 16
9 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16
10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16
11 C 0.14 3.04 4.53 -4.04 -0.02 3.02 16
12 C -0.15 -2.58 5.65 -26.73 -0.15 -2.73 16
13 C 0.12 1.91 5.67 -4.03 -0.02 1.89 16
14 N -0.72 -9.99 5.39 -60.29 -0.32 -10.31 16
15 C 0.52 7.52 6.36 -10.98 -0.07 7.45 16
16 O -0.54 -9.99 15.21 5.55 0.08 -9.90 16
17 C -0.08 -0.90 0.78 -154.55 -0.12 -1.02 16
18 C -0.14 -1.26 8.04 37.16 0.30 -0.96 16
19 C -0.11 -0.99 5.84 -25.03 -0.15 -1.14 16
20 C -0.12 -0.93 6.91 -24.70 -0.17 -1.10 16
21 C -0.12 -1.06 6.83 -25.07 -0.17 -1.24 16
22 C -0.12 -1.22 6.06 -25.61 -0.16 -1.37 16
23 H 0.01 0.12 8.14 -51.92 -0.42 -0.30 16
24 H 0.04 0.88 8.01 -51.93 -0.42 0.46 16
25 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16
26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
27 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16
28 H 0.05 1.30 3.38 -51.93 -0.18 1.12 16
29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16
30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16
31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
33 H 0.40 4.58 7.86 -40.82 -0.32 4.26 16
34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
36 H 0.06 0.54 7.55 -51.93 -0.39 0.15 16
37 H 0.07 0.68 7.85 -51.93 -0.41 0.28 16
38 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16
39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16
44 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16
LS Contribution 344.22 15.07 5.19 5.19
Total: -1.00 -32.23 344.22 -7.24 -39.47
By element:
Atomic # 1 Polarization: 7.72 SS G_CDS: -7.92 Total: -0.20 kcal
Atomic # 6 Polarization: -0.54 SS G_CDS: -0.33 Total: -0.87 kcal
Atomic # 7 Polarization: -51.85 SS G_CDS: 0.00 Total: -51.85 kcal
Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.90 kcal
Atomic # 14 Polarization: 22.42 SS G_CDS: -4.27 Total: 18.16 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -32.23 -7.24 -39.47 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001689819085.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 0.328 kcal
(2) G-P(sol) polarization free energy of solvation -32.233 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.904 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds