Wall clock time and date at job start Mon Mar 30 2020 01:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36932 * 120.00033 * 2 1 4 4 H 1.08000 * 120.00531 * 322.04279 * 3 2 1 5 5 C 1.38821 * 119.99720 * 142.03897 * 3 2 1 6 6 N 1.31618 * 119.99897 * 157.02264 * 5 3 2 7 7 Si 1.86793 * 120.00049 * 337.02742 * 5 3 2 8 8 H 1.48506 * 109.47280 * 95.67913 * 7 5 3 9 9 H 1.48501 * 109.47260 * 215.67874 * 7 5 3 10 10 H 1.48506 * 109.47136 * 335.67773 * 7 5 3 11 11 C 1.46504 * 119.99576 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47221 * 90.00109 * 11 2 1 13 13 C 1.53006 * 109.46876 * 180.02562 * 12 11 2 14 14 N 1.46508 * 109.46838 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99617 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99882 * 180.02562 * 15 14 13 18 18 C 1.52997 * 110.01731 * 59.29258 * 17 15 14 19 19 C 1.54262 * 110.02712 * 297.90430 * 17 15 14 20 20 C 1.54972 * 104.15696 * 217.13785 * 19 17 15 21 21 C 1.54885 * 102.77865 * 37.88923 * 20 19 17 22 22 C 1.53876 * 110.03140 * 180.68780 * 17 15 14 23 23 H 1.09008 * 109.47073 * 265.64583 * 1 2 3 24 24 H 1.09006 * 109.47513 * 25.63983 * 1 2 3 25 25 H 1.09003 * 109.47779 * 145.64554 * 1 2 3 26 26 H 0.96997 * 120.00271 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47280 * 329.99123 * 11 2 1 28 28 H 1.09005 * 109.46656 * 209.99519 * 11 2 1 29 29 H 1.08994 * 109.47799 * 59.99332 * 12 11 2 30 30 H 1.09005 * 109.46824 * 299.99307 * 12 11 2 31 31 H 1.08994 * 109.47486 * 59.99099 * 13 12 11 32 32 H 1.08995 * 109.46709 * 299.99131 * 13 12 11 33 33 H 0.96997 * 120.00086 * 359.97438 * 14 13 12 34 34 H 1.08998 * 109.47167 * 60.70292 * 18 17 15 35 35 H 1.09004 * 109.47274 * 180.69962 * 18 17 15 36 36 H 1.08998 * 109.47280 * 300.70182 * 18 17 15 37 37 H 1.08999 * 110.48901 * 335.78278 * 19 17 15 38 38 H 1.09001 * 110.48863 * 98.42861 * 19 17 15 39 39 H 1.08996 * 110.71687 * 279.57384 * 20 19 17 40 40 H 1.09004 * 110.92248 * 156.29991 * 20 19 17 41 41 H 1.08999 * 110.48767 * 203.40863 * 21 20 19 42 42 H 1.08998 * 110.48566 * 80.75770 * 21 20 19 43 43 H 1.09003 * 110.02794 * 238.56561 * 22 17 15 44 44 H 1.08998 * 110.03080 * 359.94682 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7811 2.0223 -0.5753 5 6 3.3176 1.3130 0.7395 6 7 4.2044 2.2303 0.4166 7 14 3.6305 0.1821 2.1929 8 1 4.4681 -0.9641 1.7570 9 1 4.3370 0.9332 3.2615 10 1 2.3351 -0.3220 2.7158 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2168 -3.0353 -1.4437 14 7 3.4604 -3.4579 -2.8252 15 6 4.1228 -4.6055 -3.0719 16 8 4.5175 -5.2880 -2.1502 17 6 4.3739 -5.0400 -4.4929 18 6 5.1857 -3.9736 -5.2309 19 6 3.0330 -5.2786 -5.2172 20 6 3.3057 -6.5043 -6.1255 21 6 4.2190 -7.3894 -5.2414 22 6 5.1280 -6.3812 -4.5085 23 1 -0.3634 -0.0780 1.0248 24 1 -0.3634 0.9265 -0.4447 25 1 -0.3635 -0.8484 -0.5799 26 1 5.0207 2.3189 0.9330 27 1 1.6084 -2.0286 0.5130 28 1 3.1499 -1.1387 0.5133 29 1 3.0414 -0.9501 -1.9568 30 1 1.4999 -1.8400 -1.9571 31 1 2.6274 -3.7949 -0.9303 32 1 4.1692 -2.9056 -0.9298 33 1 3.1450 -2.9119 -3.5622 34 1 6.1460 -3.8390 -4.7331 35 1 5.3515 -4.2910 -6.2604 36 1 4.6381 -3.0313 -5.2249 37 1 2.2458 -5.5046 -4.4980 38 1 2.7641 -4.4098 -5.8181 39 1 3.8241 -6.2022 -7.0354 40 1 2.3785 -7.0248 -6.3656 41 1 4.8147 -8.0603 -5.8603 42 1 3.6237 -7.9565 -4.5259 43 1 6.0719 -6.2726 -5.0426 44 1 5.3131 -6.7174 -3.4883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689819085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:43 Heat of formation + Delta-G solvation = -39.145189 kcal Electronic energy + Delta-G solvation = -21042.762903 eV Core-core repulsion = 17994.768944 eV Total energy + Delta-G solvation = -3047.993959 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43493 -37.58649 -36.42099 -34.75841 -32.10209 -31.54655 -30.40614 -28.86858 -26.46592 -25.90238 -25.15840 -22.30910 -21.42417 -20.86552 -20.73202 -18.99772 -17.12799 -16.78067 -15.88713 -15.66701 -15.33212 -15.11981 -14.53945 -14.22756 -13.86962 -13.53914 -13.39316 -13.23318 -12.85891 -12.74760 -12.50858 -12.13943 -11.78839 -11.70893 -11.40876 -11.32086 -11.24191 -11.19264 -11.04466 -10.90621 -10.87680 -10.66825 -10.51949 -10.40057 -9.80588 -9.55579 -9.52489 -8.88947 -8.52339 -6.83642 -6.02390 -3.43553 2.73422 3.29241 3.32533 3.47163 3.52894 4.23385 4.35916 4.51531 4.53222 4.95282 4.96464 5.00387 5.10757 5.21169 5.26601 5.34170 5.41994 5.49483 5.56241 5.60245 5.63231 5.67756 5.74293 5.83775 5.85268 5.89575 6.03328 6.05824 6.10475 6.18030 6.21235 6.26984 6.33477 6.52787 6.66834 6.69920 6.76202 6.92239 7.63984 8.03612 8.33376 8.35510 8.96731 9.69117 10.10628 11.13190 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.003939 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.338684 B = 7106.681146 C = 7328.643120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.273 4.273 4 H 0.078 0.922 5 C 0.037 3.963 6 N -0.898 5.898 7 Si 0.875 3.125 8 H -0.284 1.284 9 H -0.300 1.300 10 H -0.270 1.270 11 C 0.143 3.857 12 C -0.145 4.145 13 C 0.117 3.883 14 N -0.722 5.722 15 C 0.519 3.481 16 O -0.544 6.544 17 C -0.085 4.085 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.116 4.116 23 H 0.006 0.994 24 H 0.045 0.955 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.400 0.600 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.565 -16.217 -13.557 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.336 5.336 3 C -0.402 4.402 4 H 0.096 0.904 5 C -0.163 4.163 6 N -0.539 5.539 7 Si 0.705 3.295 8 H -0.212 1.212 9 H -0.228 1.228 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.186 4.186 13 C -0.007 4.007 14 N -0.373 5.373 15 C 0.305 3.695 16 O -0.422 6.422 17 C -0.088 4.088 18 C -0.195 4.195 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.154 4.154 23 H 0.024 0.976 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.234 0.766 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.163 -16.570 -12.811 20.977 hybrid contribution 0.172 -0.179 0.543 0.597 sum -0.991 -16.749 -12.268 20.785 Atomic orbital electron populations 1.21081 0.84589 0.98989 0.97411 1.44040 1.00793 1.01982 1.86821 1.18791 1.06137 0.90866 1.24368 0.90432 1.25473 0.96802 0.96421 0.97644 1.69876 1.08438 1.36198 1.39423 0.86952 0.78055 0.80090 0.84357 1.21165 1.22794 1.19445 1.21031 0.96544 0.87799 0.93030 1.22377 0.99554 0.94641 1.01983 1.21474 1.00549 0.96760 0.81899 1.46097 1.57913 1.23727 1.09562 1.20509 0.77225 0.80648 0.91098 1.90653 1.51237 1.54006 1.46277 1.21421 0.97472 0.97603 0.92294 1.21892 1.00010 0.97332 1.00244 1.22466 0.95296 0.98999 0.98326 1.22493 0.99639 0.95854 0.97987 1.22356 0.97821 0.97581 0.98365 1.22239 0.97813 0.92362 1.02948 0.97555 0.93657 0.95509 0.92671 0.94166 0.92724 0.90560 0.92277 0.91975 0.91639 0.76607 0.91977 0.91416 0.91970 0.91163 0.90687 0.91310 0.91438 0.91613 0.91607 0.91370 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.48 10.70 59.84 0.64 3.12 16 2 N -0.61 -14.57 2.47 -181.11 -0.45 -15.02 16 3 C -0.27 -7.62 9.88 -15.06 -0.15 -7.77 16 4 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 5 C 0.04 1.08 5.29 -17.43 -0.09 0.99 16 6 N -0.90 -27.29 13.97 55.49 0.78 -26.52 16 7 Si 0.88 22.42 25.10 -169.99 -4.27 18.16 16 8 H -0.28 -7.08 6.68 56.52 0.38 -6.70 16 9 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 10 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 11 C 0.14 3.04 4.53 -4.04 -0.02 3.02 16 12 C -0.15 -2.58 5.65 -26.73 -0.15 -2.73 16 13 C 0.12 1.91 5.67 -4.03 -0.02 1.89 16 14 N -0.72 -9.99 5.39 -60.29 -0.32 -10.31 16 15 C 0.52 7.52 6.36 -10.98 -0.07 7.45 16 16 O -0.54 -9.99 15.21 5.55 0.08 -9.90 16 17 C -0.08 -0.90 0.78 -154.55 -0.12 -1.02 16 18 C -0.14 -1.26 8.04 37.16 0.30 -0.96 16 19 C -0.11 -0.99 5.84 -25.03 -0.15 -1.14 16 20 C -0.12 -0.93 6.91 -24.70 -0.17 -1.10 16 21 C -0.12 -1.06 6.83 -25.07 -0.17 -1.24 16 22 C -0.12 -1.22 6.06 -25.61 -0.16 -1.37 16 23 H 0.01 0.12 8.14 -51.92 -0.42 -0.30 16 24 H 0.04 0.88 8.01 -51.93 -0.42 0.46 16 25 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 27 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 28 H 0.05 1.30 3.38 -51.93 -0.18 1.12 16 29 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.40 4.58 7.86 -40.82 -0.32 4.26 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 7.55 -51.93 -0.39 0.15 16 37 H 0.07 0.68 7.85 -51.93 -0.41 0.28 16 38 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 44 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -32.23 344.22 -7.24 -39.47 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.92 Total: -0.20 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -0.33 Total: -0.87 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.00 Total: -51.85 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.27 Total: 18.16 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.23 -7.24 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689819085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.328 kcal (2) G-P(sol) polarization free energy of solvation -32.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds