Wall clock time and date at job start Mon Mar 30 2020 01:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36932 * 120.00033 * 2 1 4 4 H 1.08000 * 120.00531 * 322.04279 * 3 2 1 5 5 C 1.38821 * 119.99720 * 142.03897 * 3 2 1 6 6 N 1.31618 * 119.99897 * 157.02264 * 5 3 2 7 7 Si 1.86793 * 120.00049 * 337.02742 * 5 3 2 8 8 H 1.48506 * 109.47280 * 95.67913 * 7 5 3 9 9 H 1.48501 * 109.47260 * 215.67874 * 7 5 3 10 10 H 1.48506 * 109.47136 * 335.67773 * 7 5 3 11 11 C 1.46504 * 119.99576 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47221 * 90.00109 * 11 2 1 13 13 C 1.53006 * 109.46876 * 180.02562 * 12 11 2 14 14 N 1.46508 * 109.46838 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99617 * 179.97438 * 14 13 12 16 16 O 1.21288 * 119.99899 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99882 * 180.02562 * 15 14 13 18 18 C 1.52997 * 110.01731 * 59.29258 * 17 15 14 19 19 C 1.54262 * 110.02712 * 297.90430 * 17 15 14 20 20 C 1.54972 * 104.15696 * 217.13785 * 19 17 15 21 21 C 1.54885 * 102.77865 * 37.88923 * 20 19 17 22 22 C 1.53876 * 110.03140 * 180.68780 * 17 15 14 23 23 H 1.09008 * 109.47073 * 265.64583 * 1 2 3 24 24 H 1.09006 * 109.47513 * 25.63983 * 1 2 3 25 25 H 1.09003 * 109.47779 * 145.64554 * 1 2 3 26 26 H 0.96997 * 120.00271 * 180.02562 * 6 5 3 27 27 H 1.08994 * 109.47280 * 329.99123 * 11 2 1 28 28 H 1.09005 * 109.46656 * 209.99519 * 11 2 1 29 29 H 1.08994 * 109.47799 * 59.99332 * 12 11 2 30 30 H 1.09005 * 109.46824 * 299.99307 * 12 11 2 31 31 H 1.08994 * 109.47486 * 59.99099 * 13 12 11 32 32 H 1.08995 * 109.46709 * 299.99131 * 13 12 11 33 33 H 0.96997 * 120.00086 * 359.97438 * 14 13 12 34 34 H 1.08998 * 109.47167 * 60.70292 * 18 17 15 35 35 H 1.09004 * 109.47274 * 180.69962 * 18 17 15 36 36 H 1.08998 * 109.47280 * 300.70182 * 18 17 15 37 37 H 1.08999 * 110.48901 * 335.78278 * 19 17 15 38 38 H 1.09001 * 110.48863 * 98.42861 * 19 17 15 39 39 H 1.08996 * 110.71687 * 279.57384 * 20 19 17 40 40 H 1.09004 * 110.92248 * 156.29991 * 20 19 17 41 41 H 1.08999 * 110.48767 * 203.40863 * 21 20 19 42 42 H 1.08998 * 110.48566 * 80.75770 * 21 20 19 43 43 H 1.09003 * 110.02794 * 238.56561 * 22 17 15 44 44 H 1.08998 * 110.03080 * 359.94682 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7811 2.0223 -0.5753 5 6 3.3176 1.3130 0.7395 6 7 4.2044 2.2303 0.4166 7 14 3.6305 0.1821 2.1929 8 1 4.4681 -0.9641 1.7570 9 1 4.3370 0.9332 3.2615 10 1 2.3351 -0.3220 2.7158 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2168 -3.0353 -1.4437 14 7 3.4604 -3.4579 -2.8252 15 6 4.1228 -4.6055 -3.0719 16 8 4.5175 -5.2880 -2.1502 17 6 4.3739 -5.0400 -4.4929 18 6 5.1857 -3.9736 -5.2309 19 6 3.0330 -5.2786 -5.2172 20 6 3.3057 -6.5043 -6.1255 21 6 4.2190 -7.3894 -5.2414 22 6 5.1280 -6.3812 -4.5085 23 1 -0.3634 -0.0780 1.0248 24 1 -0.3634 0.9265 -0.4447 25 1 -0.3635 -0.8484 -0.5799 26 1 5.0207 2.3189 0.9330 27 1 1.6084 -2.0286 0.5130 28 1 3.1499 -1.1387 0.5133 29 1 3.0414 -0.9501 -1.9568 30 1 1.4999 -1.8400 -1.9571 31 1 2.6274 -3.7949 -0.9303 32 1 4.1692 -2.9056 -0.9298 33 1 3.1450 -2.9119 -3.5622 34 1 6.1460 -3.8390 -4.7331 35 1 5.3515 -4.2910 -6.2604 36 1 4.6381 -3.0313 -5.2249 37 1 2.2458 -5.5046 -4.4980 38 1 2.7641 -4.4098 -5.8181 39 1 3.8241 -6.2022 -7.0354 40 1 2.3785 -7.0248 -6.3656 41 1 4.8147 -8.0603 -5.8603 42 1 3.6237 -7.9565 -4.5259 43 1 6.0719 -6.2726 -5.0426 44 1 5.3131 -6.7174 -3.4883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689819085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:42 Heat of formation + Delta-G solvation = -60.012020 kcal Electronic energy + Delta-G solvation = -21043.667757 eV Core-core repulsion = 17994.768944 eV Total energy + Delta-G solvation = -3048.898813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47186 -38.63282 -38.02883 -36.19084 -33.90174 -32.88334 -31.62402 -29.60425 -28.15882 -27.22789 -26.32840 -23.74829 -22.64017 -22.50602 -21.53119 -20.06379 -18.75912 -18.06884 -17.41086 -17.07175 -16.60771 -16.17535 -15.80961 -15.63767 -15.17341 -14.86981 -14.78394 -14.57295 -14.19928 -14.07137 -13.56572 -13.40920 -13.29162 -12.97191 -12.73290 -12.71210 -12.57218 -12.38530 -12.19945 -12.00417 -11.96957 -11.78317 -11.74230 -11.60663 -11.41164 -11.38825 -10.71026 -10.63988 -10.14204 -8.78600 -8.23870 -5.60893 1.28005 1.38064 1.48497 1.60020 2.16365 2.38819 3.01505 3.40286 3.45975 3.59215 3.75522 4.02262 4.08310 4.20629 4.34424 4.36967 4.41312 4.47740 4.51427 4.54972 4.68845 4.73219 4.76031 4.76537 4.89275 4.94035 5.00281 5.01835 5.09878 5.13131 5.13163 5.20514 5.23134 5.30366 5.35303 5.37227 5.47368 5.48121 5.92135 6.14497 6.53207 6.96963 7.21130 7.60936 8.03472 8.95769 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.003939 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.338684 B = 7106.681146 C = 7328.643120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.626 5.626 3 C -0.261 4.261 4 H 0.046 0.954 5 C -0.014 4.014 6 N -0.944 5.944 7 Si 0.935 3.065 8 H -0.278 1.278 9 H -0.307 1.307 10 H -0.261 1.261 11 C 0.134 3.866 12 C -0.126 4.126 13 C 0.127 3.873 14 N -0.714 5.714 15 C 0.514 3.486 16 O -0.589 6.589 17 C -0.080 4.080 18 C -0.136 4.136 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.119 4.119 23 H 0.013 0.987 24 H 0.042 0.958 25 H 0.062 0.938 26 H 0.263 0.737 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.413 0.587 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -17.987 -15.182 23.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.351 5.351 3 C -0.391 4.391 4 H 0.063 0.937 5 C -0.211 4.211 6 N -0.588 5.588 7 Si 0.764 3.236 8 H -0.205 1.205 9 H -0.235 1.235 10 H -0.185 1.185 11 C 0.008 3.992 12 C -0.166 4.166 13 C 0.002 3.998 14 N -0.365 5.365 15 C 0.302 3.698 16 O -0.469 6.469 17 C -0.083 4.083 18 C -0.193 4.193 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.160 4.160 22 C -0.157 4.157 23 H 0.031 0.969 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.250 0.750 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.501 -18.359 -14.463 23.505 hybrid contribution 0.519 0.370 1.003 1.188 sum -1.982 -17.989 -13.461 22.555 Atomic orbital electron populations 1.21214 0.82079 1.00529 0.98414 1.44201 1.02449 1.01361 1.87099 1.18716 1.05904 0.91675 1.22805 0.93670 1.26014 0.96994 0.98217 0.99898 1.69984 1.09253 1.38772 1.40798 0.85985 0.78193 0.78419 0.81002 1.20499 1.23515 1.18476 1.21134 0.95545 0.87383 0.95090 1.22087 1.00490 0.94373 0.99643 1.21198 0.99160 0.96213 0.83253 1.45973 1.57728 1.23841 1.08981 1.21287 0.76082 0.79981 0.92463 1.90635 1.52927 1.55309 1.48059 1.21485 0.99052 0.97951 0.89841 1.21919 0.99057 0.97150 1.01198 1.22500 0.93532 1.00553 0.98316 1.22498 1.00029 0.94854 0.97913 1.22357 0.97780 0.97475 0.98396 1.22258 0.99006 0.92925 1.01528 0.96905 0.93870 0.91945 0.92814 0.91518 0.95333 0.92859 0.89803 0.91393 0.94106 0.75006 0.93355 0.88914 0.91324 0.92297 0.88680 0.89620 0.90301 0.90027 0.92733 0.90167 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.52 10.70 127.77 1.37 5.88 16 2 N -0.63 -28.86 2.47 -726.92 -1.79 -30.66 16 3 C -0.26 -14.67 9.88 84.04 0.83 -13.84 16 4 H 0.05 2.79 8.06 -2.91 -0.02 2.77 16 5 C -0.01 -0.83 5.29 84.86 0.45 -0.38 16 6 N -0.94 -58.81 13.97 21.65 0.30 -58.51 16 7 Si 0.93 46.80 25.10 68.60 1.72 48.52 16 8 H -0.28 -13.47 6.68 99.48 0.66 -12.81 16 9 H -0.31 -15.52 7.11 99.48 0.71 -14.82 16 10 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 11 C 0.13 5.47 4.53 86.38 0.39 5.86 16 12 C -0.13 -4.25 5.65 30.59 0.17 -4.08 16 13 C 0.13 4.01 5.67 86.38 0.49 4.50 16 14 N -0.71 -18.87 5.39 -463.04 -2.50 -21.36 16 15 C 0.51 14.60 6.36 87.66 0.56 15.15 16 16 O -0.59 -21.98 15.21 -3.05 -0.05 -22.03 16 17 C -0.08 -1.58 0.78 -52.21 -0.04 -1.62 16 18 C -0.14 -2.19 8.04 71.98 0.58 -1.61 16 19 C -0.11 -1.64 5.84 31.70 0.19 -1.46 16 20 C -0.12 -1.36 6.91 31.91 0.22 -1.14 16 21 C -0.12 -1.87 6.83 31.67 0.22 -1.65 16 22 C -0.12 -2.39 6.06 31.32 0.19 -2.20 16 23 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 24 H 0.04 1.60 8.01 -2.38 -0.02 1.58 16 25 H 0.06 1.87 8.10 -2.39 -0.02 1.85 16 26 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 27 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 28 H 0.03 1.32 3.38 -2.38 -0.01 1.32 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.08 2.43 8.14 -2.38 -0.02 2.42 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 8.62 7.86 -92.71 -0.73 7.89 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.01 7.55 -2.39 -0.02 0.99 16 37 H 0.06 1.02 7.85 -2.39 -0.02 1.00 16 38 H 0.09 1.04 7.84 -2.39 -0.02 1.02 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.37 7.67 -2.39 -0.02 1.35 16 44 H 0.06 1.53 6.39 -2.39 -0.02 1.51 16 Total: -1.00 -71.29 344.22 3.48 -67.81 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.19 Total: 12.81 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.61 Total: 3.42 kcal Atomic # 7 Polarization: -106.54 SS G_CDS: -3.99 Total: -110.53 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.72 Total: 48.52 kcal Total: -71.29 3.48 -67.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689819085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.798 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds