Wall clock time and date at job start Mon Mar 30 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99925 * 2 1 4 4 C 1.52991 * 109.47288 * 270.00272 * 3 2 1 5 5 C 1.52998 * 109.47247 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47084 * 179.97438 * 5 4 3 7 7 C 1.36937 * 119.99999 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00160 * 359.97438 * 7 6 5 9 9 C 1.38813 * 120.00450 * 180.02562 * 7 6 5 10 10 N 1.31625 * 119.99617 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46680 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46743 * 119.99883 * 11 9 7 14 14 H 1.48496 * 109.47354 * 240.00253 * 11 9 7 15 15 C 1.34777 * 120.00236 * 180.02562 * 2 1 3 16 16 O 1.21279 * 120.00216 * 179.97438 * 15 2 1 17 17 C 1.50698 * 119.99600 * 359.97438 * 15 2 1 18 18 H 1.08999 * 112.85327 * 25.87312 * 17 15 2 19 19 C 1.53782 * 113.61185 * 157.06611 * 17 15 2 20 20 C 1.53778 * 87.08319 * 139.98005 * 19 17 15 21 21 C 1.53777 * 87.08199 * 334.56865 * 20 19 17 22 22 C 1.53008 * 113.61290 * 270.88498 * 21 20 19 23 23 C 1.52995 * 113.61800 * 139.98090 * 21 20 19 24 24 H 1.08991 * 109.47270 * 89.99807 * 1 2 3 25 25 H 1.09007 * 109.46826 * 209.99907 * 1 2 3 26 26 H 1.09005 * 109.47315 * 329.99757 * 1 2 3 27 27 H 1.08996 * 109.47123 * 149.99868 * 3 2 1 28 28 H 1.09003 * 109.46522 * 30.00551 * 3 2 1 29 29 H 1.09002 * 109.47087 * 60.00053 * 4 3 2 30 30 H 1.09006 * 109.47323 * 300.00092 * 4 3 2 31 31 H 1.08995 * 109.47406 * 299.99936 * 5 4 3 32 32 H 1.09002 * 109.46883 * 60.00113 * 5 4 3 33 33 H 0.97002 * 120.00334 * 0.02562 * 6 5 4 34 34 H 0.96992 * 119.99428 * 179.97438 * 10 9 7 35 35 H 1.09004 * 113.61413 * 254.53161 * 19 17 15 36 36 H 1.09003 * 113.61747 * 25.42882 * 19 17 15 37 37 H 1.09006 * 113.61154 * 89.11348 * 20 19 17 38 38 H 1.09001 * 113.61425 * 220.01870 * 20 19 17 39 39 H 1.09002 * 109.46788 * 162.82841 * 22 21 20 40 40 H 1.09001 * 109.46797 * 282.82213 * 22 21 20 41 41 H 1.09002 * 109.47018 * 42.82554 * 22 21 20 42 42 H 1.09002 * 109.47197 * 322.49721 * 23 21 20 43 43 H 1.09000 * 109.47593 * 82.50056 * 23 21 20 44 44 H 1.09001 * 109.47498 * 202.50327 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2169 3.0359 -1.4424 6 7 3.4615 3.4585 -2.8236 7 6 4.1347 4.6244 -3.0738 8 1 4.4850 5.2326 -2.2529 9 6 4.3661 5.0252 -4.3825 10 7 3.9388 4.2843 -5.3830 11 14 5.2839 6.6160 -4.7238 12 1 5.6553 7.2588 -3.4377 13 1 6.5135 6.3207 -5.5024 14 1 4.4130 7.5327 -5.5026 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4722 -0.0005 18 1 0.3909 -2.3868 -0.4384 19 6 2.2010 -3.6544 -0.5502 20 6 1.5786 -4.5033 0.5709 21 6 1.4027 -3.1937 1.3575 22 6 2.6093 -2.8342 2.2270 23 6 0.0761 -3.1068 2.1146 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 3.1499 1.1385 0.5138 28 1 1.6084 2.0284 0.5139 29 1 1.5000 1.8409 -1.9562 30 1 3.0416 0.9509 -1.9563 31 1 2.6275 3.7953 -0.9287 32 1 4.1693 2.9059 -0.9285 33 1 3.1466 2.9125 -3.5609 34 1 4.1002 4.5645 -6.2974 35 1 1.9003 -3.9646 -1.5510 36 1 3.2788 -3.5244 -0.4523 37 1 0.6363 -4.9739 0.2903 38 1 2.2796 -5.1989 1.0323 39 1 2.5552 -1.7820 2.5064 40 1 2.6050 -3.4496 3.1267 41 1 3.5271 -3.0149 1.6675 42 1 -0.7143 -3.5595 1.5158 43 1 0.1632 -3.6378 3.0625 44 1 -0.1660 -2.0612 2.3048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699531552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:53 Heat of formation + Delta-G solvation = -16.556490 kcal Electronic energy + Delta-G solvation = -20949.602606 eV Core-core repulsion = 17902.588167 eV Total energy + Delta-G solvation = -3047.014439 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99238 -38.37051 -35.99208 -34.76259 -32.23151 -30.97777 -29.92501 -27.70305 -27.24473 -26.85259 -24.73917 -22.89007 -22.44504 -20.92705 -19.71465 -18.07806 -17.29167 -17.00536 -16.10367 -15.64742 -15.12409 -14.72280 -14.40696 -14.22222 -14.03319 -13.52310 -13.26184 -13.19507 -12.99372 -12.86663 -12.46386 -12.37293 -12.17471 -11.93636 -11.79464 -11.70402 -11.48266 -11.05836 -10.88419 -10.82940 -10.68376 -10.53125 -10.35500 -10.29453 -10.00678 -9.69698 -9.48733 -8.82642 -8.58079 -6.86519 -5.71497 -2.99990 2.62941 3.05810 3.46767 3.51932 3.54615 4.14316 4.33775 4.36661 4.54807 4.64090 4.77785 4.91938 5.01542 5.17688 5.26423 5.29182 5.33844 5.36921 5.44891 5.47583 5.55147 5.57474 5.61648 5.63932 5.75261 5.76392 5.77722 5.81732 5.96951 6.03684 6.10704 6.15710 6.29312 6.35922 6.44676 6.62285 6.92104 6.94819 7.43375 7.74972 8.27092 8.47576 9.58309 10.17377 10.52075 11.51767 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039530 B = 0.003186 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.152986 B = 8785.271801 C = 8930.694375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.119 3.881 4 C -0.138 4.138 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.292 1.292 15 C 0.524 3.476 16 O -0.532 6.532 17 C -0.134 4.134 18 H 0.107 0.893 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.066 4.066 22 C -0.130 4.130 23 C -0.139 4.139 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.383 0.617 34 H 0.254 0.746 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 -17.768 15.863 26.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.349 5.349 3 C -0.004 4.004 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.312 3.688 16 O -0.409 6.409 17 C -0.156 4.156 18 H 0.125 0.875 19 C -0.158 4.158 20 C -0.169 4.169 21 C -0.066 4.066 22 C -0.187 4.187 23 C -0.196 4.196 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.038 0.962 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.388 -17.593 15.907 25.894 hybrid contribution 0.163 0.877 -0.676 1.119 sum -10.225 -16.716 15.231 24.819 Atomic orbital electron populations 1.21849 0.79907 1.02948 1.02024 1.47925 1.06859 1.06427 1.73686 1.21489 0.97437 0.83566 0.97903 1.22041 1.00979 0.98867 0.95793 1.20542 0.96019 0.91942 0.88665 1.42369 1.68305 1.25961 1.01138 1.19304 1.27627 0.98083 0.91833 0.91103 1.24760 1.01816 0.99098 0.95563 1.69682 1.51696 1.38862 0.98106 0.86096 0.79171 0.83083 0.77747 1.20536 1.21863 1.21891 1.20413 0.87944 0.84876 0.75552 1.90689 1.13857 1.87137 1.49171 1.22984 1.00637 0.92320 0.99613 0.87515 1.22819 1.00942 0.93642 0.98356 1.23015 1.01193 0.95802 0.96905 1.21709 0.96512 0.95796 0.92605 1.21635 0.96978 1.01313 0.98793 1.21808 0.95651 1.01918 1.00253 0.92516 0.91082 0.90944 0.89918 0.90725 0.92094 0.91652 0.96451 0.96249 0.78336 0.93611 0.91046 0.88487 0.89943 0.90975 0.92538 0.92438 0.91183 0.92296 0.92199 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 9.97 59.85 0.60 1.26 16 2 N -0.62 -7.77 2.87 -181.57 -0.52 -8.30 16 3 C 0.12 1.71 5.45 -4.04 -0.02 1.69 16 4 C -0.14 -2.46 5.65 -26.74 -0.15 -2.61 16 5 C 0.16 3.37 6.26 -4.04 -0.03 3.34 16 6 N -0.73 -19.86 5.60 -59.91 -0.34 -20.20 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 10 N -0.93 -29.32 13.06 55.49 0.72 -28.60 16 11 Si 0.91 23.10 29.55 -169.99 -5.02 18.07 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 C 0.52 7.20 6.00 -10.99 -0.07 7.13 16 16 O -0.53 -9.33 14.40 5.56 0.08 -9.25 16 17 C -0.13 -1.35 2.64 -90.96 -0.24 -1.59 16 18 H 0.11 0.89 6.61 -51.93 -0.34 0.55 16 19 C -0.12 -1.19 7.18 -25.92 -0.19 -1.38 16 20 C -0.13 -1.01 7.22 -25.92 -0.19 -1.20 16 21 C -0.07 -0.56 1.31 -153.70 -0.20 -0.76 16 22 C -0.13 -1.29 7.76 37.16 0.29 -1.00 16 23 C -0.14 -0.92 8.89 37.16 0.33 -0.59 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.48 5.29 -51.93 -0.27 0.21 16 26 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 27 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 28 H 0.07 0.92 7.89 -51.93 -0.41 0.51 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 10.89 7.67 -40.82 -0.31 10.58 16 34 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 1.16 6.84 -51.93 -0.36 0.80 16 37 H 0.08 0.52 7.96 -51.93 -0.41 0.11 16 38 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 39 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.81 6.76 -51.93 -0.35 0.46 16 42 H 0.06 0.33 7.94 -51.93 -0.41 -0.09 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.38 7.30 -51.93 -0.38 0.00 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -34.01 347.25 -7.75 -41.76 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -7.79 Total: 4.70 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -0.11 Total: -3.42 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.13 Total: -57.09 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.01 -7.75 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699531552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.200 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds