Wall clock time and date at job start Mon Mar 30 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46507 * 119.99925 * 2 1 4 4 C 1.52991 * 109.47288 * 270.00272 * 3 2 1 5 5 C 1.52998 * 109.47247 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47084 * 179.97438 * 5 4 3 7 7 C 1.36937 * 119.99999 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00160 * 359.97438 * 7 6 5 9 9 C 1.38813 * 120.00450 * 180.02562 * 7 6 5 10 10 N 1.31625 * 119.99617 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46680 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46743 * 119.99883 * 11 9 7 14 14 H 1.48496 * 109.47354 * 240.00253 * 11 9 7 15 15 C 1.34777 * 120.00236 * 180.02562 * 2 1 3 16 16 O 1.21279 * 120.00216 * 179.97438 * 15 2 1 17 17 C 1.50698 * 119.99600 * 359.97438 * 15 2 1 18 18 H 1.08999 * 112.85327 * 25.87312 * 17 15 2 19 19 C 1.53782 * 113.61185 * 157.06611 * 17 15 2 20 20 C 1.53778 * 87.08319 * 139.98005 * 19 17 15 21 21 C 1.53777 * 87.08199 * 334.56865 * 20 19 17 22 22 C 1.53008 * 113.61290 * 270.88498 * 21 20 19 23 23 C 1.52995 * 113.61800 * 139.98090 * 21 20 19 24 24 H 1.08991 * 109.47270 * 89.99807 * 1 2 3 25 25 H 1.09007 * 109.46826 * 209.99907 * 1 2 3 26 26 H 1.09005 * 109.47315 * 329.99757 * 1 2 3 27 27 H 1.08996 * 109.47123 * 149.99868 * 3 2 1 28 28 H 1.09003 * 109.46522 * 30.00551 * 3 2 1 29 29 H 1.09002 * 109.47087 * 60.00053 * 4 3 2 30 30 H 1.09006 * 109.47323 * 300.00092 * 4 3 2 31 31 H 1.08995 * 109.47406 * 299.99936 * 5 4 3 32 32 H 1.09002 * 109.46883 * 60.00113 * 5 4 3 33 33 H 0.97002 * 120.00334 * 0.02562 * 6 5 4 34 34 H 0.96992 * 119.99428 * 179.97438 * 10 9 7 35 35 H 1.09004 * 113.61413 * 254.53161 * 19 17 15 36 36 H 1.09003 * 113.61747 * 25.42882 * 19 17 15 37 37 H 1.09006 * 113.61154 * 89.11348 * 20 19 17 38 38 H 1.09001 * 113.61425 * 220.01870 * 20 19 17 39 39 H 1.09002 * 109.46788 * 162.82841 * 22 21 20 40 40 H 1.09001 * 109.46797 * 282.82213 * 22 21 20 41 41 H 1.09002 * 109.47018 * 42.82554 * 22 21 20 42 42 H 1.09002 * 109.47197 * 322.49721 * 23 21 20 43 43 H 1.09000 * 109.47593 * 82.50056 * 23 21 20 44 44 H 1.09001 * 109.47498 * 202.50327 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2169 3.0359 -1.4424 6 7 3.4615 3.4585 -2.8236 7 6 4.1347 4.6244 -3.0738 8 1 4.4850 5.2326 -2.2529 9 6 4.3661 5.0252 -4.3825 10 7 3.9388 4.2843 -5.3830 11 14 5.2839 6.6160 -4.7238 12 1 5.6553 7.2588 -3.4377 13 1 6.5135 6.3207 -5.5024 14 1 4.4130 7.5327 -5.5026 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1672 -0.0010 17 6 1.3854 -2.4722 -0.0005 18 1 0.3909 -2.3868 -0.4384 19 6 2.2010 -3.6544 -0.5502 20 6 1.5786 -4.5033 0.5709 21 6 1.4027 -3.1937 1.3575 22 6 2.6093 -2.8342 2.2270 23 6 0.0761 -3.1068 2.1146 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8901 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 3.1499 1.1385 0.5138 28 1 1.6084 2.0284 0.5139 29 1 1.5000 1.8409 -1.9562 30 1 3.0416 0.9509 -1.9563 31 1 2.6275 3.7953 -0.9287 32 1 4.1693 2.9059 -0.9285 33 1 3.1466 2.9125 -3.5609 34 1 4.1002 4.5645 -6.2974 35 1 1.9003 -3.9646 -1.5510 36 1 3.2788 -3.5244 -0.4523 37 1 0.6363 -4.9739 0.2903 38 1 2.2796 -5.1989 1.0323 39 1 2.5552 -1.7820 2.5064 40 1 2.6050 -3.4496 3.1267 41 1 3.5271 -3.0149 1.6675 42 1 -0.7143 -3.5595 1.5158 43 1 0.1632 -3.6378 3.0625 44 1 -0.1660 -2.0612 2.3048 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699531552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:52 Heat of formation + Delta-G solvation = -38.229315 kcal Electronic energy + Delta-G solvation = -20950.542410 eV Core-core repulsion = 17902.588167 eV Total energy + Delta-G solvation = -3047.954244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87221 -39.31467 -37.42156 -36.38977 -34.08579 -31.78583 -31.58728 -28.43307 -28.32464 -27.79244 -26.27372 -24.45511 -23.33072 -22.56943 -20.67389 -19.18681 -18.88188 -18.26180 -17.22940 -16.65287 -16.50957 -16.11437 -15.69779 -15.45901 -15.30945 -14.86414 -14.66103 -14.19099 -14.00556 -13.74939 -13.55711 -13.40701 -13.16415 -13.05804 -12.87593 -12.80764 -12.73188 -12.44264 -12.31704 -12.25069 -12.05571 -11.84513 -11.80775 -11.77618 -11.24412 -10.99545 -10.98759 -10.54781 -9.65183 -9.06272 -7.99037 -5.29567 1.44942 1.47119 1.57351 1.60109 2.07907 2.53811 3.34376 3.43453 3.57139 3.60569 3.82237 3.85031 3.93030 4.14025 4.22443 4.29587 4.37640 4.49459 4.53561 4.58264 4.64953 4.66866 4.70380 4.74452 4.79783 4.83960 4.91148 4.94864 4.98512 5.04590 5.16333 5.20277 5.25373 5.26963 5.30938 5.45094 5.46031 5.55146 5.61034 6.23049 6.44784 7.23512 7.28314 8.02757 8.26847 9.25137 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039530 B = 0.003186 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.152986 B = 8785.271801 C = 8930.694375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.617 5.617 3 C 0.127 3.873 4 C -0.119 4.119 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.250 4.250 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.264 1.264 13 H -0.293 1.293 14 H -0.288 1.288 15 C 0.514 3.486 16 O -0.582 6.582 17 C -0.133 4.133 18 H 0.132 0.868 19 C -0.131 4.131 20 C -0.117 4.117 21 C -0.062 4.062 22 C -0.128 4.128 23 C -0.136 4.136 24 H 0.060 0.940 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.035 0.965 32 H 0.012 0.988 33 H 0.372 0.628 34 H 0.252 0.748 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -18.007 17.229 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.348 5.348 3 C 0.003 3.997 4 C -0.158 4.158 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.382 4.382 8 H 0.096 0.904 9 C -0.271 4.271 10 N -0.622 5.622 11 Si 0.808 3.192 12 H -0.189 1.189 13 H -0.220 1.220 14 H -0.215 1.215 15 C 0.304 3.696 16 O -0.462 6.462 17 C -0.154 4.154 18 H 0.150 0.850 19 C -0.169 4.169 20 C -0.154 4.154 21 C -0.063 4.063 22 C -0.185 4.185 23 C -0.193 4.193 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.030 0.970 33 H 0.203 0.797 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.542 -17.835 17.323 27.847 hybrid contribution 0.836 0.928 -1.069 1.643 sum -11.706 -16.907 16.254 26.212 Atomic orbital electron populations 1.22145 0.77111 1.05125 1.02939 1.48048 1.08577 1.05357 1.72842 1.21295 0.97751 0.85392 0.95273 1.21839 0.99922 0.96011 0.98069 1.20700 0.96375 0.94066 0.86027 1.42622 1.68235 1.25453 1.02920 1.19728 1.27383 0.98780 0.92269 0.90447 1.25682 1.03188 1.02815 0.95380 1.69845 1.53244 1.40824 0.98330 0.84982 0.77446 0.78806 0.77958 1.18854 1.21997 1.21529 1.21183 0.87663 0.86311 0.74422 1.90666 1.16222 1.87918 1.51415 1.23147 1.01090 0.89985 1.01167 0.84971 1.22822 0.99417 0.94836 0.99799 1.23002 1.02061 0.95248 0.95111 1.21709 0.97022 0.95707 0.91835 1.21590 0.96823 1.00551 0.99545 1.21803 0.94468 1.02399 1.00586 0.92155 0.88608 0.89224 0.91831 0.87710 0.91534 0.94727 0.94758 0.96959 0.79682 0.93880 0.90351 0.91528 0.87408 0.90712 0.94279 0.90649 0.93790 0.90420 0.91434 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.00 9.97 127.77 1.27 2.27 16 2 N -0.62 -14.95 2.87 -846.76 -2.43 -17.38 16 3 C 0.13 3.58 5.45 86.37 0.47 4.05 16 4 C -0.12 -4.30 5.65 30.59 0.17 -4.13 16 5 C 0.16 6.72 6.26 86.38 0.54 7.26 16 6 N -0.75 -41.25 5.60 -343.45 -1.92 -43.18 16 7 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 8 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 9 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 10 N -0.97 -61.91 13.06 21.65 0.28 -61.63 16 11 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 13 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 14 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 15 C 0.51 14.21 6.00 87.66 0.53 14.74 16 16 O -0.58 -21.65 14.40 -3.03 -0.04 -21.69 16 17 C -0.13 -2.50 2.64 -11.01 -0.03 -2.53 16 18 H 0.13 1.79 6.61 -2.39 -0.02 1.77 16 19 C -0.13 -2.56 7.18 31.12 0.22 -2.34 16 20 C -0.12 -1.54 7.22 31.12 0.22 -1.32 16 21 C -0.06 -0.94 1.31 -51.65 -0.07 -1.01 16 22 C -0.13 -2.52 7.76 71.98 0.56 -1.96 16 23 C -0.14 -1.29 8.89 71.98 0.64 -0.65 16 24 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.93 5.29 -2.38 -0.01 0.92 16 26 H 0.09 1.04 7.89 -2.38 -0.02 1.02 16 27 H 0.06 2.06 7.42 -2.39 -0.02 2.04 16 28 H 0.10 2.34 7.89 -2.39 -0.02 2.32 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.37 21.75 7.67 -92.71 -0.71 21.04 16 34 H 0.25 15.42 8.31 -92.71 -0.77 14.64 16 35 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.07 1.72 6.84 -2.39 -0.02 1.70 16 37 H 0.11 0.93 7.96 -2.38 -0.02 0.91 16 38 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.04 0.88 7.67 -2.39 -0.02 0.87 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.04 1.08 6.76 -2.39 -0.02 1.07 16 42 H 0.08 0.49 7.94 -2.39 -0.02 0.47 16 43 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.57 7.30 -2.39 -0.02 0.55 16 Total: -1.00 -75.78 347.25 4.00 -71.78 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.25 Total: 26.26 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.84 Total: -3.79 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -4.07 Total: -122.19 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.04 Total: -21.69 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -75.78 4.00 -71.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699531552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.546 kcal (2) G-P(sol) polarization free energy of solvation -75.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds