Wall clock time and date at job start Mon Mar 30 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 120.00298 * 2 1 4 4 H 1.08000 * 120.00526 * 200.36033 * 3 2 1 5 5 C 1.38821 * 119.99758 * 20.36059 * 3 2 1 6 6 N 1.31618 * 120.00042 * 14.99143 * 5 3 2 7 7 Si 1.86798 * 120.00037 * 194.98927 * 5 3 2 8 8 H 1.48498 * 109.47252 * 84.99961 * 7 5 3 9 9 H 1.48494 * 109.47307 * 205.00403 * 7 5 3 10 10 H 1.48504 * 109.46995 * 325.00378 * 7 5 3 11 11 C 1.46501 * 120.00122 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47504 * 270.00386 * 11 2 1 13 13 C 1.52996 * 109.47312 * 179.97438 * 12 11 2 14 14 N 1.46499 * 109.47206 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00219 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99832 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00238 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47225 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47312 * 180.02562 * 18 17 15 20 20 C 1.53006 * 115.55050 * 34.33039 * 19 18 17 21 21 C 1.53004 * 117.49932 * 248.62067 * 19 18 17 22 22 C 1.53001 * 117.49979 * 179.97438 * 19 18 17 23 23 H 1.09000 * 109.46933 * 275.09922 * 1 2 3 24 24 H 1.08994 * 109.46816 * 35.09725 * 1 2 3 25 25 H 1.09002 * 109.47180 * 155.09575 * 1 2 3 26 26 H 0.96997 * 119.99971 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47241 * 150.00247 * 11 2 1 28 28 H 1.09003 * 109.46979 * 30.00317 * 11 2 1 29 29 H 1.09001 * 109.46985 * 59.99704 * 12 11 2 30 30 H 1.09003 * 109.46946 * 299.99951 * 12 11 2 31 31 H 1.09001 * 109.47305 * 59.99939 * 13 12 11 32 32 H 1.09003 * 109.47107 * 299.99892 * 13 12 11 33 33 H 0.96996 * 119.99738 * 0.27049 * 14 13 12 34 34 H 1.09003 * 109.47141 * 300.00053 * 17 15 14 35 35 H 1.09001 * 109.46878 * 59.99859 * 17 15 14 36 36 H 1.08999 * 109.47259 * 299.99575 * 18 17 15 37 37 H 1.08993 * 109.47342 * 59.99821 * 18 17 15 38 38 H 1.08999 * 109.47463 * 85.58176 * 20 19 18 39 39 H 1.09002 * 109.47148 * 205.58709 * 20 19 18 40 40 H 1.09000 * 109.46668 * 325.57951 * 20 19 18 41 41 H 1.08997 * 117.49687 * 359.97438 * 21 19 18 42 42 H 1.09003 * 117.49437 * 145.01908 * 21 19 18 43 43 H 1.09007 * 117.49752 * 214.97501 * 22 19 18 44 44 H 1.08997 * 117.50277 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3254 5 6 1.5207 2.3505 0.4183 6 7 0.3876 2.2836 1.0846 7 14 2.2824 4.0127 0.0356 8 1 1.8683 4.4460 -1.3230 9 1 1.8223 5.0099 1.0350 10 1 3.7624 3.9033 0.0906 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4432 13 6 3.2170 -3.0352 1.4438 14 7 3.4605 -3.4579 2.8251 15 6 4.1230 -4.6053 3.0719 16 8 4.5171 -5.2882 2.1504 17 6 4.3741 -5.0398 4.4929 18 6 5.1384 -6.3652 4.4934 19 6 5.3928 -6.8067 5.9361 20 6 4.2911 -6.4550 6.9378 21 6 6.8381 -6.7833 6.4376 22 6 6.1491 -8.1194 6.1502 23 1 -0.3633 0.0913 1.0236 24 1 -0.3633 0.8408 -0.5908 25 1 -0.3634 -0.9321 -0.4328 26 1 -0.0521 3.0974 1.3765 27 1 3.1500 -1.1386 -0.5133 28 1 1.6085 -2.0286 -0.5130 29 1 1.5001 -1.8400 1.9571 30 1 3.0416 -0.9500 1.9568 31 1 4.1694 -2.9055 0.9298 32 1 2.6275 -3.7948 0.9304 33 1 3.1419 -2.9137 3.5621 34 1 4.9632 -4.2800 5.0064 35 1 3.4216 -5.1699 5.0067 36 1 4.5489 -7.1248 3.9800 37 1 6.0908 -6.2356 3.9794 38 1 3.5268 -7.2321 6.9252 39 1 4.7189 -6.3822 7.9377 40 1 3.8427 -5.4999 6.6642 41 1 7.6077 -6.4538 5.7397 42 1 7.0042 -6.5171 7.4815 43 1 5.8622 -8.7318 7.0052 44 1 6.4658 -8.6683 5.2634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712981190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:53 Heat of formation + Delta-G solvation = -11.474619 kcal Electronic energy + Delta-G solvation = -19966.241554 eV Core-core repulsion = 16919.447481 eV Total energy + Delta-G solvation = -3046.794073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.78890 -38.40917 -36.23694 -34.69900 -32.65275 -31.82153 -29.92520 -28.51878 -26.17336 -25.73270 -24.22947 -22.69241 -21.81459 -20.68124 -19.86312 -18.98003 -17.04232 -16.75386 -15.90402 -15.83298 -15.42569 -14.82941 -14.70776 -14.38266 -13.80565 -13.44312 -13.36748 -13.03948 -12.88022 -12.68918 -12.45296 -12.31850 -11.80076 -11.61222 -11.38943 -11.30848 -11.19486 -11.06010 -10.83562 -10.73462 -10.47489 -10.37546 -10.09503 -9.92307 -9.84983 -9.78411 -9.67012 -8.88473 -8.54572 -6.79348 -5.73049 -3.16569 2.73383 3.29045 3.38667 3.44839 3.45563 3.49439 4.40731 4.44802 4.50496 4.64340 4.67145 4.96343 5.06336 5.12262 5.29660 5.36847 5.38548 5.43977 5.47690 5.54135 5.55108 5.63110 5.77479 5.83102 5.86388 5.88054 5.96301 5.98158 6.12401 6.14097 6.27033 6.44457 6.65129 6.75579 6.83315 7.01201 7.37766 7.63918 7.71474 7.80951 8.32959 8.39010 9.23504 9.87692 10.35826 11.32231 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.002700 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.829241 B =10369.689355 C =10613.488515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.069 0.931 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.156 3.844 12 C -0.150 4.150 13 C 0.119 3.881 14 N -0.727 5.727 15 C 0.507 3.493 16 O -0.549 6.549 17 C -0.141 4.141 18 C -0.065 4.065 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.177 4.177 22 C -0.177 4.177 23 H 0.028 0.972 24 H 0.043 0.957 25 H -0.002 1.002 26 H 0.252 0.748 27 H 0.045 0.955 28 H 0.039 0.961 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.401 0.599 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.453 -16.822 11.145 21.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.199 4.199 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.028 3.972 12 C -0.191 4.191 13 C -0.005 4.005 14 N -0.378 5.378 15 C 0.293 3.707 16 O -0.427 6.427 17 C -0.181 4.181 18 C -0.102 4.102 19 C -0.129 4.129 20 C -0.180 4.180 21 C -0.214 4.214 22 C -0.214 4.214 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.016 0.984 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.235 0.765 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.607 -17.145 10.507 21.499 hybrid contribution 0.188 1.296 0.390 1.367 sum 7.796 -15.849 10.897 20.753 Atomic orbital electron populations 1.20799 0.82515 0.95520 0.99380 1.44014 1.01977 1.00752 1.85812 1.19233 0.96988 0.85025 1.37026 0.91288 1.24976 0.97926 0.98381 0.98624 1.70084 1.18883 1.26768 1.39658 0.86274 0.78626 0.84009 0.77646 1.21468 1.21795 1.20582 1.20715 0.95971 0.88183 0.92337 1.22547 0.99590 0.94056 1.02879 1.21492 1.00196 0.97027 0.81768 1.46217 1.57820 1.23946 1.09866 1.20752 0.77583 0.80784 0.91578 1.90685 1.51319 1.54011 1.46717 1.21770 1.02819 0.99392 0.94101 1.20836 1.01017 0.95546 0.92838 1.21556 0.93403 1.01482 0.96434 1.21498 0.97224 1.02065 0.97239 1.23188 0.95116 1.01168 1.01886 1.23031 1.04451 0.90640 1.03232 0.95340 0.93868 0.98351 0.93791 0.93624 0.94267 0.92208 0.91332 0.91891 0.92071 0.76533 0.88830 0.88556 0.90845 0.91014 0.92178 0.92549 0.91272 0.88807 0.88957 0.88927 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 9.02 59.85 0.54 4.55 16 2 N -0.60 -15.15 2.93 -181.12 -0.53 -15.68 16 3 C -0.25 -6.94 9.68 -15.06 -0.15 -7.08 16 4 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 5 C 0.00 -0.03 5.06 -17.43 -0.09 -0.12 16 6 N -0.91 -26.35 10.67 55.49 0.59 -25.76 16 7 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 8 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.16 3.15 5.71 -4.04 -0.02 3.13 16 12 C -0.15 -2.64 5.65 -26.73 -0.15 -2.79 16 13 C 0.12 1.81 5.67 -4.04 -0.02 1.78 16 14 N -0.73 -9.51 5.56 -60.30 -0.33 -9.85 16 15 C 0.51 6.79 7.83 -10.99 -0.09 6.71 16 16 O -0.55 -9.50 15.98 5.56 0.09 -9.41 16 17 C -0.14 -1.32 4.71 -27.89 -0.13 -1.45 16 18 C -0.06 -0.63 4.69 -26.73 -0.13 -0.76 16 19 C -0.13 -1.04 2.47 -154.50 -0.38 -1.42 16 20 C -0.12 -0.85 9.49 37.16 0.35 -0.50 16 21 C -0.18 -1.34 9.83 -26.70 -0.26 -1.60 16 22 C -0.18 -1.34 9.97 -26.71 -0.27 -1.60 16 23 H 0.03 0.75 7.40 -51.93 -0.38 0.36 16 24 H 0.04 1.14 7.21 -51.93 -0.37 0.77 16 25 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 26 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.05 0.90 8.03 -51.93 -0.42 0.49 16 28 H 0.04 0.73 7.86 -51.93 -0.41 0.32 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.40 4.38 8.47 -40.82 -0.35 4.04 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.74 6.45 -51.93 -0.33 0.41 16 36 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 40 H 0.07 0.44 5.59 -51.93 -0.29 0.15 16 41 H 0.09 0.72 8.05 -51.93 -0.42 0.30 16 42 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 43 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -31.59 355.91 -8.61 -40.19 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.97 Total: -0.50 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.79 Total: -1.15 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.27 Total: -51.29 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.59 -8.61 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712981190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.718 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds