Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36935 * 120.00298 * 2 1 4 4 H 1.08000 * 120.00526 * 200.36033 * 3 2 1 5 5 C 1.38821 * 119.99758 * 20.36059 * 3 2 1 6 6 N 1.31618 * 120.00042 * 14.99143 * 5 3 2 7 7 Si 1.86798 * 120.00037 * 194.98927 * 5 3 2 8 8 H 1.48498 * 109.47252 * 84.99961 * 7 5 3 9 9 H 1.48494 * 109.47307 * 205.00403 * 7 5 3 10 10 H 1.48504 * 109.46995 * 325.00378 * 7 5 3 11 11 C 1.46501 * 120.00122 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47504 * 270.00386 * 11 2 1 13 13 C 1.52996 * 109.47312 * 179.97438 * 12 11 2 14 14 N 1.46499 * 109.47206 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00219 * 180.02562 * 14 13 12 16 16 O 1.21283 * 119.99832 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00238 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47225 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47312 * 180.02562 * 18 17 15 20 20 C 1.53006 * 115.55050 * 34.33039 * 19 18 17 21 21 C 1.53004 * 117.49932 * 248.62067 * 19 18 17 22 22 C 1.53001 * 117.49979 * 179.97438 * 19 18 17 23 23 H 1.09000 * 109.46933 * 275.09922 * 1 2 3 24 24 H 1.08994 * 109.46816 * 35.09725 * 1 2 3 25 25 H 1.09002 * 109.47180 * 155.09575 * 1 2 3 26 26 H 0.96997 * 119.99971 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47241 * 150.00247 * 11 2 1 28 28 H 1.09003 * 109.46979 * 30.00317 * 11 2 1 29 29 H 1.09001 * 109.46985 * 59.99704 * 12 11 2 30 30 H 1.09003 * 109.46946 * 299.99951 * 12 11 2 31 31 H 1.09001 * 109.47305 * 59.99939 * 13 12 11 32 32 H 1.09003 * 109.47107 * 299.99892 * 13 12 11 33 33 H 0.96996 * 119.99738 * 0.27049 * 14 13 12 34 34 H 1.09003 * 109.47141 * 300.00053 * 17 15 14 35 35 H 1.09001 * 109.46878 * 59.99859 * 17 15 14 36 36 H 1.08999 * 109.47259 * 299.99575 * 18 17 15 37 37 H 1.08993 * 109.47342 * 59.99821 * 18 17 15 38 38 H 1.08999 * 109.47463 * 85.58176 * 20 19 18 39 39 H 1.09002 * 109.47148 * 205.58709 * 20 19 18 40 40 H 1.09000 * 109.46668 * 325.57951 * 20 19 18 41 41 H 1.08997 * 117.49687 * 359.97438 * 21 19 18 42 42 H 1.09003 * 117.49437 * 145.01908 * 21 19 18 43 43 H 1.09007 * 117.49752 * 214.97501 * 22 19 18 44 44 H 1.08997 * 117.50277 * 0.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1791 1.2151 -0.3254 5 6 1.5207 2.3505 0.4183 6 7 0.3876 2.2836 1.0846 7 14 2.2824 4.0127 0.0356 8 1 1.8683 4.4460 -1.3230 9 1 1.8223 5.0099 1.0350 10 1 3.7624 3.9033 0.0906 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7099 1.4432 13 6 3.2170 -3.0352 1.4438 14 7 3.4605 -3.4579 2.8251 15 6 4.1230 -4.6053 3.0719 16 8 4.5171 -5.2882 2.1504 17 6 4.3741 -5.0398 4.4929 18 6 5.1384 -6.3652 4.4934 19 6 5.3928 -6.8067 5.9361 20 6 4.2911 -6.4550 6.9378 21 6 6.8381 -6.7833 6.4376 22 6 6.1491 -8.1194 6.1502 23 1 -0.3633 0.0913 1.0236 24 1 -0.3633 0.8408 -0.5908 25 1 -0.3634 -0.9321 -0.4328 26 1 -0.0521 3.0974 1.3765 27 1 3.1500 -1.1386 -0.5133 28 1 1.6085 -2.0286 -0.5130 29 1 1.5001 -1.8400 1.9571 30 1 3.0416 -0.9500 1.9568 31 1 4.1694 -2.9055 0.9298 32 1 2.6275 -3.7948 0.9304 33 1 3.1419 -2.9137 3.5621 34 1 4.9632 -4.2800 5.0064 35 1 3.4216 -5.1699 5.0067 36 1 4.5489 -7.1248 3.9800 37 1 6.0908 -6.2356 3.9794 38 1 3.5268 -7.2321 6.9252 39 1 4.7189 -6.3822 7.9377 40 1 3.8427 -5.4999 6.6642 41 1 7.6077 -6.4538 5.7397 42 1 7.0042 -6.5171 7.4815 43 1 5.8622 -8.7318 7.0052 44 1 6.4658 -8.6683 5.2634 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712981190.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = -30.026036 kcal Electronic energy + Delta-G solvation = -19967.046003 eV Core-core repulsion = 16919.447481 eV Total energy + Delta-G solvation = -3047.598523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83762 -39.12146 -37.94562 -36.15144 -33.85300 -33.25168 -31.56102 -29.09863 -27.97201 -27.30963 -25.42600 -23.42899 -23.23068 -22.15371 -21.14486 -19.63289 -18.76098 -18.02925 -17.14485 -16.95083 -16.55582 -16.13750 -16.01030 -15.48164 -15.27755 -14.82435 -14.56335 -14.52643 -14.09271 -13.74177 -13.30955 -13.16425 -13.03830 -12.94360 -12.79726 -12.69421 -12.45727 -12.36816 -12.27896 -12.06896 -12.02147 -11.90384 -11.84597 -11.46783 -10.99819 -10.85413 -10.62389 -10.46064 -10.05616 -8.82184 -7.82537 -5.28208 1.47139 1.49100 1.56697 1.67464 2.25727 2.52471 2.87121 3.31185 3.66211 3.69467 3.77357 3.96537 4.04597 4.12191 4.23019 4.28339 4.39016 4.45937 4.50733 4.66006 4.68243 4.80857 4.80964 4.88309 4.90761 4.93110 4.98607 5.05398 5.14487 5.19845 5.27068 5.29797 5.30474 5.32235 5.42655 5.49410 5.52835 5.64837 5.72924 6.33094 6.59748 7.15757 7.28100 7.88494 8.31163 9.21130 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031999 B = 0.002700 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.829241 B =10369.689355 C =10613.488515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.261 4.261 4 H 0.071 0.929 5 C -0.055 4.055 6 N -0.938 5.938 7 Si 0.967 3.033 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.270 1.270 11 C 0.150 3.850 12 C -0.128 4.128 13 C 0.132 3.868 14 N -0.722 5.722 15 C 0.504 3.496 16 O -0.592 6.592 17 C -0.131 4.131 18 C -0.062 4.062 19 C -0.133 4.133 20 C -0.123 4.123 21 C -0.176 4.176 22 C -0.179 4.179 23 H 0.006 0.994 24 H 0.015 0.985 25 H 0.031 0.969 26 H 0.248 0.752 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.413 0.587 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.063 -17.328 12.205 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.250 4.250 6 N -0.585 5.585 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.221 1.221 10 H -0.195 1.195 11 C 0.023 3.977 12 C -0.169 4.169 13 C 0.007 3.993 14 N -0.374 5.374 15 C 0.293 3.707 16 O -0.473 6.473 17 C -0.170 4.170 18 C -0.100 4.100 19 C -0.133 4.133 20 C -0.180 4.180 21 C -0.213 4.213 22 C -0.216 4.216 23 H 0.024 0.976 24 H 0.034 0.966 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.249 0.751 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.235 -17.670 11.583 22.676 hybrid contribution 0.024 1.368 0.018 1.368 sum 8.258 -16.301 11.601 21.645 Atomic orbital electron populations 1.20567 0.82674 0.95977 0.97763 1.44253 1.02271 1.01822 1.86055 1.19533 0.97154 0.86232 1.36206 0.91153 1.25717 0.98658 1.01576 0.99011 1.70236 1.20188 1.27129 1.40908 0.85288 0.78301 0.79881 0.77010 1.21405 1.22134 1.19473 1.20898 0.95944 0.86789 0.94049 1.22184 0.99363 0.94693 1.00656 1.21183 0.99418 0.95591 0.83118 1.46121 1.57702 1.24186 1.09367 1.21444 0.76420 0.80018 0.92824 1.90670 1.52992 1.55220 1.48376 1.21795 1.04296 0.99477 0.91440 1.20757 0.99942 0.95447 0.93836 1.21541 0.94212 1.01928 0.95604 1.21521 0.96817 1.02446 0.97218 1.23240 0.94616 1.01004 1.02408 1.23098 1.04332 0.90735 1.03469 0.97562 0.96629 0.95025 0.94314 0.93371 0.92268 0.92581 0.93095 0.92538 0.91972 0.75078 0.86820 0.86185 0.92358 0.92678 0.91988 0.91718 0.90585 0.89300 0.87787 0.87829 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.62 9.02 127.77 1.15 9.77 16 2 N -0.62 -30.87 2.93 -726.93 -2.13 -33.00 16 3 C -0.26 -14.23 9.68 84.04 0.81 -13.42 16 4 H 0.07 3.74 7.86 -2.91 -0.02 3.71 16 5 C -0.05 -3.05 5.06 84.86 0.43 -2.62 16 6 N -0.94 -55.00 10.67 21.65 0.23 -54.77 16 7 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 8 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 9 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 C 0.15 5.85 5.71 86.38 0.49 6.34 16 12 C -0.13 -4.37 5.65 30.59 0.17 -4.20 16 13 C 0.13 3.82 5.67 86.38 0.49 4.31 16 14 N -0.72 -17.68 5.56 -463.07 -2.57 -20.26 16 15 C 0.50 12.86 7.83 87.66 0.69 13.54 16 16 O -0.59 -20.23 15.98 -3.04 -0.05 -20.28 16 17 C -0.13 -2.17 4.71 29.85 0.14 -2.03 16 18 C -0.06 -1.15 4.69 30.59 0.14 -1.01 16 19 C -0.13 -1.92 2.47 -52.18 -0.13 -2.05 16 20 C -0.12 -1.38 9.49 71.98 0.68 -0.70 16 21 C -0.18 -2.38 9.83 30.61 0.30 -2.08 16 22 C -0.18 -2.48 9.97 30.61 0.31 -2.18 16 23 H 0.01 0.33 7.40 -2.39 -0.02 0.31 16 24 H 0.01 0.81 7.21 -2.39 -0.02 0.79 16 25 H 0.03 1.31 7.84 -2.39 -0.02 1.29 16 26 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16 28 H 0.06 2.07 7.86 -2.39 -0.02 2.05 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.41 8.15 8.47 -92.71 -0.79 7.37 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.12 1.48 6.45 -2.39 -0.02 1.46 16 36 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 37 H 0.05 1.19 7.86 -2.39 -0.02 1.17 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.63 7.90 -2.39 -0.02 0.61 16 40 H 0.08 0.73 5.59 -2.39 -0.01 0.72 16 41 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 42 H 0.10 1.17 8.05 -2.39 -0.02 1.15 16 43 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -67.56 355.91 3.36 -64.19 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.17 Total: 13.53 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.68 Total: 3.68 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.47 Total: -108.02 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.56 3.36 -64.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712981190.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.169 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds