Wall clock time and date at job start Mon Mar 30 2020 01:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 N 1.46497 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00370 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99711 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00367 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00059 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99977 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47426 * 89.99782 * 10 8 6 12 12 H 1.48504 * 109.47064 * 209.99966 * 10 8 6 13 13 H 1.48506 * 109.46981 * 329.99647 * 10 8 6 14 14 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00463 * 179.97438 * 14 2 1 16 16 C 1.50700 * 119.99675 * 359.72090 * 14 2 1 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 2 18 18 C 1.53005 * 110.01621 * 58.60814 * 17 16 14 19 19 C 1.54269 * 110.03019 * 297.16674 * 17 16 14 20 20 C 1.54886 * 104.19359 * 217.10282 * 19 17 16 21 21 C 1.54888 * 102.74932 * 37.94175 * 20 19 17 22 22 C 1.53870 * 110.03482 * 179.97438 * 17 16 14 23 23 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 24 24 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 25 25 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 26 26 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 27 27 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 28 28 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 29 29 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 30 30 H 0.97001 * 120.00037 * 359.97438 * 5 4 3 31 31 H 0.96990 * 119.99718 * 179.97438 * 9 8 6 32 32 H 1.09009 * 109.47352 * 300.27556 * 16 14 2 33 33 H 1.08998 * 109.47585 * 60.27844 * 16 14 2 34 34 H 1.08995 * 109.47108 * 60.69990 * 18 17 16 35 35 H 1.09001 * 109.46967 * 180.70549 * 18 17 16 36 36 H 1.09004 * 109.46853 * 300.69884 * 18 17 16 37 37 H 1.08996 * 110.48565 * 335.77965 * 19 17 16 38 38 H 1.08995 * 110.48444 * 98.42695 * 19 17 16 39 39 H 1.09000 * 110.76161 * 279.62811 * 20 19 17 40 40 H 1.09004 * 110.75493 * 156.25673 * 20 19 17 41 41 H 1.08998 * 110.48953 * 203.37392 * 21 20 19 42 42 H 1.09005 * 110.59973 * 80.79303 * 21 20 19 43 43 H 1.08993 * 110.03555 * 238.56938 * 22 17 16 44 44 H 1.08999 * 110.03191 * 359.95631 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1844 2.9795 -1.4426 6 6 3.5261 3.5728 -2.6284 7 1 3.2564 3.1050 -3.5637 8 6 4.2192 4.7755 -2.6284 9 7 4.5481 5.3456 -3.7683 10 14 4.6864 5.5842 -1.0107 11 1 6.0232 5.0995 -0.5828 12 1 4.7277 7.0581 -1.1878 13 1 3.6796 5.2382 0.0247 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 0.0053 17 6 2.3797 -3.6352 0.0104 18 6 3.2892 -3.5412 1.2372 19 6 3.2260 -3.6125 -1.2792 20 6 3.4106 -5.1077 -1.6387 21 6 2.0366 -5.7201 -1.2698 22 6 1.6235 -4.9753 0.0170 23 1 -0.3633 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0283 0.5138 27 1 3.1500 1.1384 0.5137 28 1 3.0415 0.9508 -1.9564 29 1 1.5000 1.8408 -1.9563 30 1 3.4263 3.3998 -0.6025 31 1 5.0321 6.1861 -3.7682 32 1 0.7588 -2.5261 0.8956 33 1 0.7587 -2.5340 -0.8844 34 1 2.6848 -3.5959 2.1426 35 1 4.0016 -4.3662 1.2254 36 1 3.8293 -2.5946 1.2174 37 1 2.6942 -3.0916 -2.0754 38 1 4.1919 -3.1428 -1.0934 39 1 4.2054 -5.5536 -1.0406 40 1 3.6135 -5.2269 -2.7031 41 1 2.1345 -6.7885 -1.0772 42 1 1.3115 -5.5415 -2.0638 43 1 1.9053 -5.5588 0.8933 44 1 0.5481 -4.7971 0.0173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714698849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:27 Heat of formation + Delta-G solvation = -35.897307 kcal Electronic energy + Delta-G solvation = -21215.530868 eV Core-core repulsion = 18167.677748 eV Total energy + Delta-G solvation = -3047.853120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.40474 -38.35659 -35.93406 -34.47824 -32.39235 -31.47565 -29.18388 -28.80233 -27.71781 -26.32180 -24.88600 -23.27539 -21.39391 -20.82154 -19.49328 -18.51214 -17.58046 -16.94389 -16.12690 -15.74404 -15.26362 -14.83497 -14.34423 -14.02964 -13.97803 -13.67558 -13.37673 -13.27017 -13.14746 -12.73290 -12.63711 -12.41768 -11.89001 -11.68621 -11.49499 -11.29215 -11.15577 -11.12800 -11.02550 -10.86745 -10.73350 -10.61918 -10.53986 -10.48427 -10.15214 -9.58620 -9.39463 -8.87478 -8.50355 -7.22204 -5.74485 -3.10525 2.76037 3.07338 3.39287 3.43194 3.47450 4.35858 4.44376 4.57029 4.61527 4.75910 4.99419 5.05925 5.12000 5.27981 5.30187 5.34330 5.43545 5.46081 5.48975 5.56853 5.57355 5.60015 5.62226 5.68094 5.73094 5.78114 5.79563 5.88546 5.97969 6.01819 6.09632 6.20820 6.31285 6.37096 6.45208 6.58120 6.66856 6.85109 7.50146 8.00890 8.33936 8.44010 9.22583 9.94798 10.14236 11.43949 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.003872 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.379802 B = 7229.944179 C = 7533.787395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.615 5.615 3 C 0.104 3.896 4 C 0.147 3.853 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.089 0.911 8 C 0.004 3.996 9 N -0.935 5.935 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.510 3.490 15 O -0.524 6.524 16 C -0.128 4.128 17 C -0.047 4.047 18 C -0.151 4.151 19 C -0.109 4.109 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.117 4.117 23 H 0.054 0.946 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.031 0.969 29 H 0.025 0.975 30 H 0.361 0.639 31 H 0.260 0.740 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 -21.378 10.494 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.349 5.349 3 C -0.019 4.019 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.107 0.893 8 C -0.192 4.192 9 N -0.583 5.583 10 Si 0.716 3.284 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.298 3.702 15 O -0.400 6.400 16 C -0.168 4.168 17 C -0.048 4.048 18 C -0.208 4.208 19 C -0.146 4.146 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.154 4.154 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.193 0.807 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.755 -21.331 10.255 25.599 hybrid contribution 0.127 0.790 1.014 1.291 sum -9.628 -20.541 11.269 25.330 Atomic orbital electron populations 1.21803 0.79766 1.03464 1.01534 1.47840 1.06864 1.06320 1.73882 1.21697 0.97473 0.83713 0.98975 1.20882 0.95289 0.88555 0.93367 1.42565 1.68833 1.23155 1.05440 1.19033 1.29717 1.02834 0.85670 0.89278 1.24671 1.00468 0.97611 0.96417 1.69703 1.44977 1.19656 1.23920 0.86520 0.78607 0.78914 0.84320 1.20965 1.21691 1.20368 1.20674 0.88250 0.85182 0.76077 1.90643 1.13841 1.86898 1.48665 1.21897 0.98887 0.92278 1.03699 1.20921 0.94454 0.92503 0.96893 1.22161 0.99274 1.04008 0.95382 1.22440 1.00956 0.95531 0.95677 1.22525 0.96914 0.96273 1.00763 1.22353 0.97367 0.99056 0.97396 1.22304 0.99587 0.95376 0.98161 0.92768 0.90612 0.91179 0.90778 0.89826 0.95094 0.95745 0.80687 0.93045 0.89356 0.89059 0.93819 0.93136 0.89459 0.92089 0.90300 0.91734 0.91819 0.92082 0.91812 0.91673 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.24 59.84 0.61 1.32 16 2 N -0.61 -8.22 2.87 -181.57 -0.52 -8.74 16 3 C 0.10 1.70 5.52 -4.04 -0.02 1.68 16 4 C 0.15 3.03 6.58 -4.04 -0.03 3.01 16 5 N -0.75 -18.78 5.41 -59.91 -0.32 -19.10 16 6 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 7 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 8 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 9 N -0.93 -30.01 13.97 55.49 0.78 -29.23 16 10 Si 0.89 22.60 27.74 -169.99 -4.71 17.89 16 11 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 14 C 0.51 7.08 7.14 -10.98 -0.08 7.01 16 15 O -0.52 -9.16 11.74 5.55 0.07 -9.10 16 16 C -0.13 -1.26 2.96 -27.88 -0.08 -1.35 16 17 C -0.05 -0.49 0.63 -153.39 -0.10 -0.58 16 18 C -0.15 -1.69 7.82 37.16 0.29 -1.40 16 19 C -0.11 -1.28 4.74 -25.07 -0.12 -1.40 16 20 C -0.13 -1.22 6.91 -24.74 -0.17 -1.40 16 21 C -0.12 -1.01 6.83 -25.05 -0.17 -1.19 16 22 C -0.12 -0.96 6.11 -25.59 -0.16 -1.12 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 25 H 0.07 0.50 6.45 -51.93 -0.33 0.16 16 26 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 27 H 0.08 1.49 7.42 -51.93 -0.39 1.11 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.36 8.65 5.53 -40.82 -0.23 8.43 16 31 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 32 H 0.09 0.70 8.11 -51.92 -0.42 0.28 16 33 H 0.09 0.79 7.38 -51.93 -0.38 0.40 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.23 5.43 -51.93 -0.28 0.95 16 37 H 0.06 0.76 7.84 -51.93 -0.41 0.35 16 38 H 0.08 1.12 7.15 -51.93 -0.37 0.75 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 44 H 0.06 0.44 7.67 -51.93 -0.40 0.05 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -33.81 340.34 -7.71 -41.52 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.84 Total: 4.33 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.27 Total: -2.69 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -0.07 Total: -57.08 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.07 Total: -9.10 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.81 -7.71 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714698849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.620 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds