Wall clock time and date at job start Mon Mar 30 2020 01:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 N 1.46497 * 109.47238 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00370 * 180.02562 * 5 4 3 7 7 H 1.08001 * 119.99711 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00367 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00059 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99977 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47426 * 89.99782 * 10 8 6 12 12 H 1.48504 * 109.47064 * 209.99966 * 10 8 6 13 13 H 1.48506 * 109.46981 * 329.99647 * 10 8 6 14 14 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 15 15 O 1.21283 * 120.00463 * 179.97438 * 14 2 1 16 16 C 1.50700 * 119.99675 * 359.72090 * 14 2 1 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 2 18 18 C 1.53005 * 110.01621 * 58.60814 * 17 16 14 19 19 C 1.54269 * 110.03019 * 297.16674 * 17 16 14 20 20 C 1.54886 * 104.19359 * 217.10282 * 19 17 16 21 21 C 1.54888 * 102.74932 * 37.94175 * 20 19 17 22 22 C 1.53870 * 110.03482 * 179.97438 * 17 16 14 23 23 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 24 24 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 25 25 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 26 26 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 27 27 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 28 28 H 1.09000 * 109.46757 * 299.99562 * 4 3 2 29 29 H 1.08993 * 109.47081 * 59.99692 * 4 3 2 30 30 H 0.97001 * 120.00037 * 359.97438 * 5 4 3 31 31 H 0.96990 * 119.99718 * 179.97438 * 9 8 6 32 32 H 1.09009 * 109.47352 * 300.27556 * 16 14 2 33 33 H 1.08998 * 109.47585 * 60.27844 * 16 14 2 34 34 H 1.08995 * 109.47108 * 60.69990 * 18 17 16 35 35 H 1.09001 * 109.46967 * 180.70549 * 18 17 16 36 36 H 1.09004 * 109.46853 * 300.69884 * 18 17 16 37 37 H 1.08996 * 110.48565 * 335.77965 * 19 17 16 38 38 H 1.08995 * 110.48444 * 98.42695 * 19 17 16 39 39 H 1.09000 * 110.76161 * 279.62811 * 20 19 17 40 40 H 1.09004 * 110.75493 * 156.25673 * 20 19 17 41 41 H 1.08998 * 110.48953 * 203.37392 * 21 20 19 42 42 H 1.09005 * 110.59973 * 80.79303 * 21 20 19 43 43 H 1.08993 * 110.03555 * 238.56938 * 22 17 16 44 44 H 1.08999 * 110.03191 * 359.95631 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 7 3.1844 2.9795 -1.4426 6 6 3.5261 3.5728 -2.6284 7 1 3.2564 3.1050 -3.5637 8 6 4.2192 4.7755 -2.6284 9 7 4.5481 5.3456 -3.7683 10 14 4.6864 5.5842 -1.0107 11 1 6.0232 5.0995 -0.5828 12 1 4.7277 7.0581 -1.1878 13 1 3.6796 5.2382 0.0247 14 6 2.1389 -1.1672 -0.0005 15 8 3.3517 -1.1672 -0.0010 16 6 1.3854 -2.4723 0.0053 17 6 2.3797 -3.6352 0.0104 18 6 3.2892 -3.5412 1.2372 19 6 3.2260 -3.6125 -1.2792 20 6 3.4106 -5.1077 -1.6387 21 6 2.0366 -5.7201 -1.2698 22 6 1.6235 -4.9753 0.0170 23 1 -0.3633 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.6084 2.0283 0.5138 27 1 3.1500 1.1384 0.5137 28 1 3.0415 0.9508 -1.9564 29 1 1.5000 1.8408 -1.9563 30 1 3.4263 3.3998 -0.6025 31 1 5.0321 6.1861 -3.7682 32 1 0.7588 -2.5261 0.8956 33 1 0.7587 -2.5340 -0.8844 34 1 2.6848 -3.5959 2.1426 35 1 4.0016 -4.3662 1.2254 36 1 3.8293 -2.5946 1.2174 37 1 2.6942 -3.0916 -2.0754 38 1 4.1919 -3.1428 -1.0934 39 1 4.2054 -5.5536 -1.0406 40 1 3.6135 -5.2269 -2.7031 41 1 2.1345 -6.7885 -1.0772 42 1 1.3115 -5.5415 -2.0638 43 1 1.9053 -5.5588 0.8933 44 1 0.5481 -4.7971 0.0173 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714698849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:26 Heat of formation + Delta-G solvation = -57.808006 kcal Electronic energy + Delta-G solvation = -21216.480988 eV Core-core repulsion = 18167.677748 eV Total energy + Delta-G solvation = -3048.803239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39352 -39.26998 -37.38440 -36.11402 -33.77122 -33.05454 -30.65002 -29.55674 -28.71504 -27.38667 -25.93549 -24.88180 -23.21067 -21.56047 -20.61652 -19.65074 -19.35909 -17.96570 -17.28940 -16.78587 -16.48391 -16.05244 -15.76358 -15.60151 -15.29535 -14.80372 -14.69401 -14.36766 -14.23682 -14.01599 -13.56581 -13.46792 -13.23270 -12.99492 -12.82486 -12.69089 -12.42845 -12.37192 -12.12412 -12.02078 -11.88533 -11.85624 -11.64221 -11.43239 -11.35327 -11.24449 -11.04738 -10.47498 -9.61056 -9.39618 -8.07971 -5.43925 1.34914 1.40643 1.47159 1.71910 2.04497 2.44937 3.22999 3.51937 3.66750 3.73070 3.80354 3.90722 4.16842 4.17798 4.31879 4.36044 4.41466 4.51971 4.52632 4.57937 4.65226 4.72829 4.74667 4.87315 4.87845 4.98031 4.98586 5.01904 5.04920 5.07805 5.16341 5.22243 5.28992 5.43757 5.45804 5.51889 5.56153 5.66581 5.70281 6.15088 6.49178 7.00481 7.30168 7.73916 7.95394 9.13470 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.003872 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.379802 B = 7229.944179 C = 7533.787395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.617 5.617 3 C 0.118 3.882 4 C 0.151 3.849 5 N -0.755 5.755 6 C -0.244 4.244 7 H 0.051 0.949 8 C -0.062 4.062 9 N -0.982 5.982 10 Si 0.960 3.040 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.245 1.245 14 C 0.499 3.501 15 O -0.570 6.570 16 C -0.120 4.120 17 C -0.048 4.048 18 C -0.147 4.147 19 C -0.112 4.112 20 C -0.127 4.127 21 C -0.120 4.120 22 C -0.110 4.110 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.065 0.935 28 H 0.001 0.999 29 H 0.031 0.969 30 H 0.368 0.632 31 H 0.261 0.739 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.877 -22.713 13.021 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.350 5.350 3 C -0.006 4.006 4 C 0.024 3.976 5 N -0.402 5.402 6 C -0.374 4.374 7 H 0.069 0.931 8 C -0.254 4.254 9 N -0.632 5.632 10 Si 0.786 3.214 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.169 1.169 14 C 0.289 3.711 15 O -0.449 6.449 16 C -0.159 4.159 17 C -0.048 4.048 18 C -0.205 4.205 19 C -0.149 4.149 20 C -0.165 4.165 21 C -0.158 4.158 22 C -0.147 4.147 23 H 0.098 0.902 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.083 0.917 28 H 0.019 0.981 29 H 0.049 0.951 30 H 0.202 0.798 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.129 0.871 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.278 -22.709 12.807 28.818 hybrid contribution 0.912 1.152 0.112 1.474 sum -11.366 -21.557 12.919 27.582 Atomic orbital electron populations 1.22116 0.76759 1.04672 1.03582 1.47976 1.08651 1.04967 1.73399 1.21359 0.97839 0.85958 0.95481 1.20945 0.94174 0.86001 0.96513 1.42519 1.69175 1.24308 1.04161 1.18980 1.29428 1.02951 0.86072 0.93108 1.25582 1.00660 0.98378 1.00731 1.69890 1.46170 1.20296 1.26858 0.85341 0.78846 0.77366 0.79833 1.20720 1.21528 1.16940 1.21528 0.88038 0.86539 0.74948 1.90648 1.16106 1.87604 1.50554 1.21961 0.98638 0.89269 1.06030 1.20949 0.94435 0.94283 0.95177 1.22084 0.99529 1.02128 0.96718 1.22391 0.99380 0.96607 0.96553 1.22524 0.98381 0.94816 1.00754 1.22353 0.96003 0.99743 0.97663 1.22267 1.00462 0.93640 0.98351 0.90213 0.90799 0.88708 0.88319 0.91666 0.98072 0.95128 0.79828 0.93072 0.86186 0.87095 0.92144 0.93143 0.92817 0.93340 0.93969 0.91840 0.91914 0.90681 0.91163 0.90911 0.89705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 10.24 127.77 1.31 2.34 16 2 N -0.62 -15.40 2.87 -846.76 -2.43 -17.83 16 3 C 0.12 3.73 5.52 86.38 0.48 4.21 16 4 C 0.15 6.29 6.58 86.38 0.57 6.86 16 5 N -0.76 -37.67 5.41 -343.45 -1.86 -39.53 16 6 C -0.24 -14.72 10.47 84.03 0.88 -13.84 16 7 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 8 C -0.06 -3.78 5.50 84.86 0.47 -3.31 16 9 N -0.98 -64.72 13.97 21.65 0.30 -64.42 16 10 Si 0.96 46.53 27.74 68.60 1.90 48.44 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 13 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 14 C 0.50 13.45 7.14 87.66 0.63 14.07 16 15 O -0.57 -20.68 11.74 -3.04 -0.04 -20.72 16 16 C -0.12 -2.04 2.96 29.85 0.09 -1.95 16 17 C -0.05 -0.91 0.63 -51.45 -0.03 -0.94 16 18 C -0.15 -3.21 7.82 71.98 0.56 -2.64 16 19 C -0.11 -2.69 4.74 31.67 0.15 -2.54 16 20 C -0.13 -2.38 6.91 31.88 0.22 -2.16 16 21 C -0.12 -1.64 6.83 31.68 0.22 -1.42 16 22 C -0.11 -1.42 6.11 31.33 0.19 -1.23 16 23 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 1.14 8.07 -2.39 -0.02 1.12 16 25 H 0.09 0.93 6.45 -2.39 -0.02 0.92 16 26 H 0.10 2.65 8.07 -2.39 -0.02 2.63 16 27 H 0.06 2.32 7.42 -2.39 -0.02 2.31 16 28 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.37 17.14 5.53 -92.71 -0.51 16.63 16 31 H 0.26 16.20 8.31 -92.72 -0.77 15.43 16 32 H 0.12 1.34 8.11 -2.38 -0.02 1.32 16 33 H 0.11 1.50 7.38 -2.39 -0.02 1.48 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 1.56 5.43 -2.38 -0.01 1.55 16 37 H 0.05 1.25 7.84 -2.39 -0.02 1.23 16 38 H 0.04 1.30 7.15 -2.39 -0.02 1.28 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.15 8.14 -2.38 -0.02 1.14 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.07 0.87 7.67 -2.39 -0.02 0.85 16 44 H 0.08 0.77 7.67 -2.39 -0.02 0.75 16 Total: -1.00 -77.44 340.34 3.99 -73.45 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.39 Total: 23.17 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: 5.72 Total: -2.57 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -3.99 Total: -121.78 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.04 Total: -20.72 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.44 kcal Total: -77.44 3.99 -73.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714698849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.645 kcal (2) G-P(sol) polarization free energy of solvation -77.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds