Wall clock time and date at job start Mon Mar 30 2020 01:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 C 1.52993 * 109.47305 * 240.00088 * 2 1 3 5 5 C 1.50699 * 109.46862 * 119.99695 * 2 1 3 6 6 O 1.21280 * 120.00274 * 356.92398 * 5 2 1 7 7 N 1.34781 * 119.99807 * 176.91435 * 5 2 1 8 8 C 1.48146 * 127.83810 * 355.29287 * 7 5 2 9 9 C 1.54389 * 104.61214 * 140.38488 * 8 7 5 10 10 C 1.54278 * 104.96598 * 23.87042 * 9 8 7 11 11 C 1.52996 * 110.34518 * 241.12844 * 10 9 8 12 12 C 1.52999 * 110.34722 * 118.96824 * 10 9 8 13 13 N 1.46501 * 109.46862 * 62.87866 * 12 10 9 14 14 C 1.36933 * 120.00512 * 179.97438 * 13 12 10 15 15 H 1.08012 * 119.99520 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00506 * 180.02562 * 14 13 12 17 17 N 1.31610 * 120.00041 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47416 * 89.99687 * 18 16 14 20 20 H 1.48503 * 109.47026 * 209.99973 * 18 16 14 21 21 H 1.48509 * 109.46829 * 329.99420 * 18 16 14 22 22 C 1.48420 * 127.81972 * 175.28961 * 7 5 2 23 23 H 1.09000 * 109.47354 * 300.00047 * 1 2 3 24 24 H 1.09003 * 109.46805 * 59.99677 * 1 2 3 25 25 H 1.08994 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47041 * 173.77323 * 3 2 1 27 27 H 1.08990 * 109.47297 * 293.77864 * 3 2 1 28 28 H 1.09002 * 109.47121 * 53.77856 * 3 2 1 29 29 H 1.08994 * 109.47356 * 300.00204 * 4 2 1 30 30 H 1.08998 * 109.47435 * 60.00440 * 4 2 1 31 31 H 1.08998 * 109.47045 * 180.02562 * 4 2 1 32 32 H 1.09002 * 110.40523 * 21.60423 * 8 7 5 33 33 H 1.08991 * 110.41017 * 259.16854 * 8 7 5 34 34 H 1.08995 * 110.34555 * 264.99026 * 9 8 7 35 35 H 1.09006 * 110.34095 * 142.74147 * 9 8 7 36 36 H 1.09002 * 109.47061 * 297.11803 * 11 10 9 37 37 H 1.08996 * 109.47494 * 177.12044 * 11 10 9 38 38 H 1.08996 * 109.47339 * 57.11851 * 11 10 9 39 39 H 1.09002 * 109.47316 * 182.87804 * 12 10 9 40 40 H 1.08993 * 109.47231 * 302.88122 * 12 10 9 41 41 H 0.97002 * 120.00021 * 0.02562 * 13 12 10 42 42 H 0.96998 * 120.00326 * 180.02562 * 17 16 14 43 43 H 1.09000 * 110.44590 * 100.87770 * 22 7 5 44 44 H 1.08996 * 110.49467 * 338.35938 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2456 -1.1222 2.0566 7 7 3.3558 -0.8882 1.4129 8 6 4.4556 -0.5462 0.4811 9 6 5.5745 0.0112 1.3872 10 6 5.3011 -0.5975 2.7782 11 6 5.0349 0.5094 3.8003 12 6 6.4847 -1.4585 3.2241 13 7 7.6765 -0.6175 3.3599 14 6 8.8654 -1.1727 3.7516 15 1 8.9245 -2.2309 3.9600 16 6 9.9945 -0.3757 3.8807 17 7 9.9227 0.9135 3.6263 18 14 11.6165 -1.1334 4.4144 19 1 12.3724 -1.5793 3.2166 20 1 12.4142 -0.1239 5.1558 21 1 11.3520 -2.2994 5.2953 22 6 4.0417 -1.4711 2.5930 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1243 1.4445 0.1115 27 1 1.7705 1.9232 -0.9403 28 1 1.5886 1.9875 0.8291 29 1 1.6768 -1.7488 -1.2493 30 1 1.6768 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2489 32 1 4.1291 0.2126 -0.2300 33 1 4.8001 -1.4371 -0.0437 34 1 5.5194 1.0989 1.4320 35 1 6.5514 -0.3045 1.0208 36 1 5.9236 1.1326 3.9006 37 1 4.7935 0.0630 4.7649 38 1 4.1982 1.1213 3.4635 39 1 6.2557 -1.9219 4.1837 40 1 6.6701 -2.2341 2.4811 41 1 7.6234 0.3329 3.1731 42 1 10.7118 1.4704 3.7162 43 1 4.3223 -2.5061 2.3975 44 1 3.4034 -1.4094 3.4744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716880551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:49 Heat of formation + Delta-G solvation = -30.995738 kcal Electronic energy + Delta-G solvation = -21729.611293 eV Core-core repulsion = 18681.970721 eV Total energy + Delta-G solvation = -3047.640572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.53628 -38.28658 -35.78435 -34.74962 -32.57398 -30.18907 -29.50950 -27.57698 -27.56180 -26.52816 -25.52226 -23.57819 -22.49514 -21.48388 -19.05665 -18.34805 -17.20673 -16.59579 -15.88466 -15.64161 -14.80797 -14.60625 -14.12949 -13.94028 -13.75552 -13.57487 -13.24516 -12.93156 -12.68915 -12.62115 -12.42370 -12.29720 -12.18773 -11.90978 -11.83322 -11.63064 -11.25640 -11.14581 -11.01330 -10.83604 -10.81202 -10.54626 -10.30990 -10.20674 -9.91659 -9.69641 -9.55776 -8.88436 -8.61446 -6.92642 -5.77991 -3.06048 2.67267 2.99430 3.42750 3.48436 3.49781 4.30205 4.54525 4.58645 4.68280 4.78433 4.82526 5.07432 5.12595 5.31551 5.32993 5.38392 5.43871 5.47206 5.53780 5.58798 5.62237 5.67026 5.73395 5.78489 5.90962 5.93285 5.98290 6.00557 6.03865 6.12459 6.18488 6.22894 6.29351 6.44993 6.60411 6.68777 6.80643 6.84930 7.64383 7.69529 8.20857 8.41275 9.52874 10.10402 10.45594 11.44905 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041257 B = 0.003944 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.502200 B = 7097.509816 C = 7237.745174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.147 4.147 4 C -0.152 4.152 5 C 0.542 3.458 6 O -0.547 6.547 7 N -0.617 5.617 8 C 0.090 3.910 9 C -0.125 4.125 10 C -0.079 4.079 11 C -0.130 4.130 12 C 0.167 3.833 13 N -0.729 5.729 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.934 5.934 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.115 3.885 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.043 0.957 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.071 0.929 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.770 -0.179 -10.153 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.204 4.204 4 C -0.209 4.209 5 C 0.331 3.669 6 O -0.424 6.424 7 N -0.350 5.350 8 C -0.032 4.032 9 C -0.163 4.163 10 C -0.080 4.080 11 C -0.187 4.187 12 C 0.039 3.961 13 N -0.374 5.374 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.007 4.007 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -16.188 -0.504 -9.665 18.861 hybrid contribution 1.067 -0.086 0.256 1.101 sum -15.121 -0.590 -9.409 17.819 Atomic orbital electron populations 1.21653 0.92071 1.02652 1.01941 1.20743 0.97713 0.96478 0.93619 1.22008 1.02095 0.93587 1.02751 1.22116 1.02358 1.00492 0.95939 1.20190 0.80219 0.78949 0.87568 1.90677 1.54401 1.51148 1.46221 1.49023 1.04781 1.61467 1.19738 1.22812 0.86971 1.00329 0.93094 1.22662 0.98819 1.00700 0.94111 1.21660 0.94602 0.96246 0.95496 1.21776 1.01404 0.97750 0.97793 1.20656 0.85758 0.92456 0.97265 1.42360 1.04815 1.07939 1.82240 1.19231 0.86949 0.93255 1.37564 0.91241 1.24708 0.98002 0.95580 1.02600 1.69647 1.28969 1.03887 1.55738 0.86204 0.84051 0.77908 0.78114 1.21768 1.21818 1.20797 1.22475 0.92751 0.96709 0.88807 0.91928 0.92130 0.92122 0.91236 0.91430 0.92018 0.92213 0.91493 0.91050 0.89537 0.90975 0.91031 0.88930 0.91137 0.92874 0.93768 0.96155 0.96126 0.78041 0.93546 0.91045 0.90134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 7.77 37.16 0.29 -0.96 16 2 C -0.08 -0.86 0.75 -155.66 -0.12 -0.97 16 3 C -0.15 -1.34 8.25 37.16 0.31 -1.04 16 4 C -0.15 -1.29 8.20 37.15 0.30 -0.99 16 5 C 0.54 7.65 6.62 -10.98 -0.07 7.58 16 6 O -0.55 -9.69 16.29 5.56 0.09 -9.60 16 7 N -0.62 -8.26 3.30 -169.08 -0.56 -8.82 16 8 C 0.09 1.04 4.79 -2.41 -0.01 1.03 16 9 C -0.12 -1.77 5.84 -25.33 -0.15 -1.92 16 10 C -0.08 -1.24 0.73 -153.11 -0.11 -1.35 16 11 C -0.13 -2.10 8.06 37.16 0.30 -1.80 16 12 C 0.17 3.22 4.89 -4.04 -0.02 3.20 16 13 N -0.73 -17.61 4.96 -59.91 -0.30 -17.91 16 14 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 15 H 0.07 1.86 7.83 -52.48 -0.41 1.44 16 16 C -0.01 -0.37 5.50 -17.44 -0.10 -0.46 16 17 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.12 1.68 6.14 -2.25 -0.01 1.66 16 23 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 26 H 0.07 0.65 5.29 -51.93 -0.27 0.38 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.59 4.72 -51.93 -0.24 0.34 16 32 H 0.09 0.82 3.92 -51.93 -0.20 0.62 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.07 1.00 7.71 -51.93 -0.40 0.60 16 35 H 0.09 1.48 7.53 -51.93 -0.39 1.09 16 36 H 0.07 1.29 6.87 -51.93 -0.36 0.93 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.38 9.70 6.22 -40.82 -0.25 9.45 16 42 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 1.00 7.86 -51.93 -0.41 0.59 16 44 H 0.08 1.25 7.65 -51.93 -0.40 0.85 16 LS Contribution 337.48 15.07 5.09 5.09 Total: -1.00 -31.25 337.48 -7.06 -38.31 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.54 Total: 5.37 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 0.46 Total: -2.69 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.13 Total: -53.58 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.25 -7.06 -38.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716880551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.317 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds